BAC Information

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BAC

Clone NameB6Ng01-050E19
Chromosome3 (Build37)
Map Location 52,641,248 - 52,798,617
singlet/doubletdoublet
Overlap geneCog6
Upstream geneMaml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
Downstream geneLhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050E19.bB6Ng01-050E19.g
ACCDH874288DH874289
length1841,091
definitionDH874288|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E19, 5' end.DH874289|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,641,248 - 52,641,431)(52,797,501 - 52,798,617)
sequence
gaattcatctccaactgtcattcccatagcctctctgctgagaaacaaaa
gattcgggaaacttggcaatgtatgaactggaagcaaaacttcactcact
aatggatctatccaaactgatgccatttgagcaacttattttggtaatag
cttttaaacaggggttggggtggggggtggggaa
gaattctttttccaagtgagtagctcttacacgcgttcgcgaccggccag
gaaagacgcaacaaaccggaatcttctgcggcaaaagctttattgcttac
atcttcaggagcaagagctttattgcttacatcttcaggagcaagagctt
tattgcttacatcttcaggagcaagagagaatggcgaaaccccgtccctt
ttaaggagaattatcctccgtctaggacgtgtcactccctgattggctgc
agcccatcggccgagttgtcgtcacggggaaggcagagcacatggagtgg
agaactacccttggcacatgcgcagattatttgtttaccacttagaacac
aggatgtcagcaccatcttgtaacggcgaatgtgagggcggctccccaca
agtagcttgtggaatcctccagtgcctctcaacgaagagtggagccaaga
gccccagtctggacactgaaccctgagagtgggcaatcatctcagtgatg
ccgctgttgggatctgtgctgctgtgtggattcacttattctcagaactt
gggctaaaaccaaaataaactaggttatttttcagtatgtcccatgtata
attctacaagtcaagggaatgccagcttttctcataagatcttgagcttt
aacgtagaaagcggtaatggtaaccctgggtaaaccttgtcaccctgagt
ggcgtccttcagaagcggctgttgctaacttgagtctggagtatattaga
cagggcgtcacgagccctccgtgttgtacacagctgaagagtacacagcg
tgggtaactgaagagtacacaggcatgggtactgagagtacacaggcgtg
ggtactgagagtacacaggcgtgggtactgagagtaaacaggcatgggta
ctgagagtacacaggcgtgggtactgagagtacacagcggtgggtactga
gagtacaaggctggggtactgagagtaccaggcgtgggtactggagagta
cacagcctgggtaactgaaaagtactatgcctgggtaactgagagaacca
ggcgtggtactgaagagtacccaggcgggtactgctctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52641248_52641431
seq2: B6Ng01-050E19.b_41_224

seq1  GAATTCATCTCCAACTGTCATTCCCATAGCCTCTCTGCTGAGAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCCAACTGTCATTCCCATAGCCTCTCTGCTGAGAAACAAAA  50

seq1  GATTCGGGAAACTTGGCAATGTATGAACTGGAAGCAAAACTTCACTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGGGAAACTTGGCAATGTATGAACTGGAAGCAAAACTTCACTCACT  100

seq1  AATGGATCTATCCAAACTGATGCCATTTGAGCAACTTATTTTGGTAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCTATCCAAACTGATGCCATTTGAGCAACTTATTTTGGTAATAG  150

seq1  CTTTTAAACAGGGGTTGGGGTGGGGGGTGGGGAA  184
      ||||||||||||||||||||||||||||||||||
seq2  CTTTTAAACAGGGGTTGGGGTGGGGGGTGGGGAA  184

seq1: chr3_52797501_52798617
seq2: B6Ng01-050E19.g_67_1157 (reverse)

seq1  AAGAGAGCAGTTACCACGCCTGTGTACTCTTCAGTTACCCACGCCTGTGT  50
      |||||||||| |||| |||||| ||||||||||||   ||||||||| ||
seq2  AAGAGAGCAG-TACC-CGCCTGGGTACTCTTCAGT--ACCACGCCTG-GT  45

seq1  ACTCTTCAGTTACCCACGCCTGTGTACTCTTCAGTTACCCACGCCTGTGT  100
       ||| ||||||||||| || |  ||||| |||||||||||| | ||||||
seq2  TCTC-TCAGTTACCCAGGCAT-AGTACTTTTCAGTTACCCA-GGCTGTGT  92

seq1  ACTCTTCAGTTACCCACGCCTGTGTACTCTTCAGTTACCCACGCCTGTGT  150
      ||||| ||| |||||||||||| |||||| |||| |||||  |||| |||
seq2  ACTCTCCAG-TACCCACGCCTG-GTACTC-TCAG-TACCCCAGCCT-TGT  137

seq1  ACTCTTCAGTTACCCACGCCTGTGTACTCTTCAGTTACCCACGCCTGTGT  200
      |||| |||| |||||||  |||||||||| |||| |||||||||||||||
seq2  ACTC-TCAG-TACCCACCGCTGTGTACTC-TCAG-TACCCACGCCTGTGT  183

seq1  ACTCTTCAGTTACCCATGCCTGTGTACTCTTCAGTTACCCACGCCTGTGT  250
      |||| |||| ||||||||||||| ||||| |||| |||||||||||||||
seq2  ACTC-TCAG-TACCCATGCCTGTTTACTC-TCAG-TACCCACGCCTGTGT  229

seq1  ACTCTTCAGTTACCCACGCCTGTGTACTCTTCAGTTACCCATGCCTGTGT  300
      |||| |||| ||||||||||||||||||| |||| |||||||||||||||
seq2  ACTC-TCAG-TACCCACGCCTGTGTACTC-TCAG-TACCCATGCCTGTGT  275

seq1  ACTCTTCAGTTACCCACGCCTGTGTACTCTTCAGCTGTGTACAACACGGA  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTCTTCAGTTACCCACG-CTGTGTACTCTTCAGCTGTGTACAACACGGA  324

seq1  GGGCTCGTGACGCCCTGTCTAATATACTCCAGACTCAAGTTAGCAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCGTGACGCCCTGTCTAATATACTCCAGACTCAAGTTAGCAACAGC  374

seq1  CGCTTCTGAAGGACGCCACTCAGGGTGACAAGGTTTACCCAGGGTTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCTGAAGGACGCCACTCAGGGTGACAAGGTTTACCCAGGGTTACCA  424

seq1  TTACCGCTTTCTACGTTAAAGCTCAAGATCTTATGAGAAAAGCTGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGCTTTCTACGTTAAAGCTCAAGATCTTATGAGAAAAGCTGGCATT  474

seq1  CCCTTGACTTGTAGAATTATACATGGGACATACTGAAAAATAACCTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGACTTGTAGAATTATACATGGGACATACTGAAAAATAACCTAGTT  524

seq1  TATTTTGGTTTTAGCCCAAGTTCTGAGAATAAGTGAATCCACACAGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGTTTTAGCCCAAGTTCTGAGAATAAGTGAATCCACACAGCAGC  574

seq1  ACAGATCCCAACAGCGGCATCACTGAGATGATTGCCCACTCTCAGGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCCAACAGCGGCATCACTGAGATGATTGCCCACTCTCAGGGTTC  624

seq1  AGTGTCCAGACTGGGGCTCTTGGCTCCACTCTTCGTTGAGAGGCACTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCAGACTGGGGCTCTTGGCTCCACTCTTCGTTGAGAGGCACTGGA  674

seq1  GGATTCCACAAGCTACTTGTGGGGAGCCGCCCTCACATTCGCCGTTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCACAAGCTACTTGTGGGGAGCCGCCCTCACATTCGCCGTTACAA  724

seq1  GATGGTGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCAT  774

seq1  GTGCCAAGGGTAGTTCTCCACTCCATGTGCTCTGCCTTCCCCGTGACGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGGGTAGTTCTCCACTCCATGTGCTCTGCCTTCCCCGTGACGAC  824

seq1  AACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCTAGACGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCTAGACGG  874

seq1  AGGATAATTCTCCTTAAAAGGGACGGGGTTTCGCCATTCTCTCTTGCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATTCTCCTTAAAAGGGACGGGGTTTCGCCATTCTCTCTTGCTCC  924

seq1  TGAAGATGTAAGCAATAAAGCTCTTGCTCCTGAAGATGTAAGCAATAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTAAGCAATAAAGCTCTTGCTCCTGAAGATGTAAGCAATAAAG  974

seq1  CTCTTGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAGAAGATTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAGAAGATTCC  1024

seq1  GGTTTGTTGCGTCTTTCCTGGCCGGTCGCGAACGCGTGTAAGAGCTACTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTGCGTCTTTCCTGGCCGGTCGCGAACGCGTGTAAGAGCTACTC  1074

seq1  ACTTGGAAAAAGAATTC  1117
      |||||||||||||||||
seq2  ACTTGGAAAAAGAATTC  1091