BAC Information

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BAC

Clone NameB6Ng01-050F13
Chromosome4 (Build37)3 (Build37)
Map Location 81,055,018 - 81,055,56572,678,463 - 72,679,662
singlet/doubletsingletsinglet
Overlap geneMpdz
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050F13.bB6Ng01-050F13.g
ACCDH874320DH874321
length1,0081,162
definitionDH874320|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F13, 5' end.DH874321|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,055,018 - 81,055,565)(72,678,463 - 72,679,662)
sequence
gaattccttgatccacttagatttgaccttagtacaaggagataggaatg
gatcaatttgcattcttctacatgataaccaccagttgtgccagcaccat
ttgttgaaaatgctgtctttcttccactggatggttttagctcccttgta
aaagatcaagtgaccatagttgtgtgagttcatttctgtgtcttcaattc
tattacattggtctatttgtctgtcactataccagtaccatgcagtattt
aatcacaattgttctgtagtaaagctttaggtcaggcatggtgattccac
cagacgttcttttatccttgagaagactttttgctatcctaggttttttg
ttattccagatgaatttgcagattgctctttctaatttgttgaagaattg
agttggaattttgatggggattgcattgaatctgtagattgcttttggca
agatagccatttttacaatgttgatcctgccaatccatgagcatgggaga
tctttccatcttctgagatcttctttaatttctttcttcagagacttgga
gttcttatcatacagatctttcacttccttagttagagtcactcagagat
attttatattatttgtgactattgtgaagggtgttgtttgcctaattttt
ttctcagcctgtttattctttgtgtagagaaaagccattgacttgtttga
gttaattttatatccagctatttcaccgaagctgtttatcaggtttagga
gttctctgatggaatttttagggtcacttatatatactatcatatcatct
gcaaaagtgatattttgacttcttcttttccaatttgtatccccttgatc
tccttttgttgtcaaattgctctggctaagacttcaagtacactgttgac
aggtagggaggagggggcagcctgtctagtccctgatttagtgggatgct
ccagcttgtctcatttactttgatgttggctactggtttgcgcagattgc
tttatcat
gaattcaatattcatatatccaggggacataaaaatgttatttgtatatt
atttaatttcagccctggagtgaaattagaaaatacctataccatttatt
taagtctgttcagttccttcatatagttacaaataatacaaaattcatta
tttctgttttttgaggaactgtacagtcttgtaattgtaacagtcaaggt
gttacagtttaattttaaatgctcattgaaataatttatttagcttattt
ctttaggctctgatagaagcctattattaggccattattgtttttattcc
tttccagtaagaatacaacatgatccttccctctactttcaatcttcctt
tgaaaacaaaaaacaaaaaaacaaacactaatttttccagtcctgcagta
cacagttgatgttcaaaaggacttatgtagcttttacatttaatagtgaa
taaacttcaggaaatcttttccaaggattgaaattttatatatgcaaatt
ataataaaaacatattcttcaaacccacactgagctcgctaaaagagcag
ctcacatggagactcaggagaagacttgaagttaaggctacacagcaagt
tagcctctcttctggaataaatgtgcttcttattcctataaaaatccaag
tatgtgtgggattgggatttatgccactgcaaaatggaaaactgtcatga
cagagactcttctagtcattattgaattatctaaaccaagaaagcagatg
aaatctttaatggcatttcattttagatatttatattttcccttctggtt
tgtatgtcaggagttgctctgaattatttaaacgctatcatgcagtcttt
tcagattctgaagaaacaaatcccctttctcccttcctagaaatattctg
aaaatttgggcagttctgcatcatgtcatttaaagagcagcactattata
gtaatactcaatctttgatctctcctctctctcccccttttctttcctcc
tctctcctctttctaccagagaggaaaatatttttaatttcatgatctat
accagatatatcaaaaattatcgaaatagagaggagttcctgagagttga
tcttaactggtatcttttatcttcaccgaggaactcagatcacctaggat
tcatacaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81055018_81055565
seq2: B6Ng01-050F13.b_520_1057 (reverse)

seq1  ATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGG  50
      ||||| |||||||||| | ||||||||||||||||||||||||||||| |
seq2  ATGAT-AAAGCAATCTGC-GCAAACCAGTAGCCAACATCAAAGTAAAT-G  47

seq1  AGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCC  100
      ||| ||||||| ||| |||||||| |||||||||||||||| ||||||||
seq2  AGACAAGCTGG-AGC-ATCCCACT-AAATCAGGGACTAGAC-AGGCTGCC  93

seq1  CACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCA  150
      | | | ||||||||| | ||||||  ||||||||||| ||||||||||||
seq2  C-CCTCCTCCCTACC-TGTCAACAGTGTACTTGAAGTCTTAGCCAGAGCA  141

seq1  ATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGT  200
      ||| ||||||||||||||||||||||||||||||||||||| || |||||
seq2  ATTTGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAAGAAGT  191

seq1  CAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCAC-TTTTGCAGATGATATGATAGTATATATAAGTGACCCTA  240

seq1  AAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTA  300
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  AAAATTCCATCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAATA  290

seq1  GCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAA  350
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTGGATATAAAATTAACTCAAACAAGTCAATGGCTTTTCTCTACACAAA  340

seq1  GAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAG  400
      ||||||||||||||||||| |||||||| |||||||||||||| ||||||
seq2  GAATAAACAGGCTGAGAAAAAAATTAGGCAAACAACACCCTTCACAATAG  390

seq1  TCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAA  450
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  TCACAAATAATATAAAATATCTCTGAGTGACTCTAACTAAGGAAGTGAAA  440

seq1  GATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGA  500
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  GATCTGTATGATAAGAACTCCAAGTCTCTGAAGAAAGAAATTAAAGAAGA  490

seq1  TCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAA  538

seq1: chr3_72678463_72679662
seq2: B6Ng01-050F13.g_66_1227 (reverse)

seq1  AAATTTGGTATTTGAATCCTAGGTGTAGATCCTGAAGTTCATTTACTGTT  50
      |||||||   | ||||||||||||   ||| ||| ||||| |     | |
seq2  AAATTTG---TATGAATCCTAGGT---GAT-CTG-AGTTCCT----CGGT  38

seq1  GAAGATAAAAGATAAACAGTATTAGAGATACTAACTCTCAGTAACTCACT  100
      ||||||||||||| | |||  ||| ||||   ||||||||| ||||| ||
seq2  GAAGATAAAAGAT-ACCAG--TTA-AGAT--CAACTCTCAGGAACTC-CT  81

seq1  CCTCTAATTCTGATAATTTTGTGATATATCTGGTATTTAGATCATTGAAA  150
       ||||| ||| ||||||||| ||||||||||||||  ||||||| |||||
seq2  -CTCTATTTC-GATAATTTT-TGATATATCTGGTA--TAGATCA-TGAAA  125

seq1  TATAAAATATTTTTCTCTCTGTGTAGAAAGAGGAGAGAGAGAGAAAGAAA  200
      |  |||||||||| ||||||| ||||||||||||||||| ||| ||  ||
seq2  TTAAAAATATTTTCCTCTCTG-GTAGAAAGAGGAGAGAG-GAGGAAAGAA  173

seq1  AAGAGAGAGAGAGA-GAGAGATCAAAGAATTGAGTATTTACCTATAAATA  249
      ||| | |||||||| |||||||||||| ||||||||||   |||| ||||
seq2  AAGGGGGAGAGAGAGGAGAGATCAAAG-ATTGAGTATT--ACTAT-AATA  219

seq1  GTTGCTGCCTTCTTTAAATGACATGATGCAGAACCTGCCCAAATTTTTCA  299
      | ||||||  ||||||||||||||||||||||| ||||||||| ||||||
seq2  G-TGCTGC--TCTTTAAATGACATGATGCAGAA-CTGCCCAAA-TTTTCA  264

seq1  GAATATTTTCTAGGAAGGGAGAAAGGGGATTTGTTTTCTTCAGAATCTGA  349
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATA-TTTCTAGGAAGGGAGAAAGGGGATTTG-TTTCTTCAGAATCTGA  312

seq1  AAAGACTGCATGATAGCGTTTAAATAATTCAGAGCAACTCCCTGACATAC  399
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAGACTGCATGATAGCGTTTAAATAATTCAGAGCAACT-CCTGACATAC  361

seq1  AAACCAGAAGGGAAAATATAAATATCTAAAATGAAATGCCATTAAAGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAAGGGAAAATATAAATATCTAAAATGAAATGCCATTAAAGATT  411

seq1  TCATCTGCTTTCTTGGTTTAGATAATTCAATAATGACTAGAAGAGTCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCTTTCTTGGTTTAGATAATTCAATAATGACTAGAAGAGTCTCT  461

seq1  GTCATGACAGTTTTCCATTTTGCAGTGGCATAAATCCCAATCCCACACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACAGTTTTCCATTTTGCAGTGGCATAAATCCCAATCCCACACAT  511

seq1  ACTTGGATTTTTATAGGAATAAGAAGCACATTTATTCCAGAAGAGAGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGATTTTTATAGGAATAAGAAGCACATTTATTCCAGAAGAGAGGCT  561

seq1  AACTTGCTGTGTAGCCTTAACTTCAAGTCTTCTCCTGAGTCTCCATGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTGTGTAGCCTTAACTTCAAGTCTTCTCCTGAGTCTCCATGTGA  611

seq1  GCTGCTCTTTTAGCGAGCTCAGTGTGGGTTTGAAGAATATGTTTTTATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTTTAGCGAGCTCAGTGTGGGTTTGAAGAATATGTTTTTATTA  661

seq1  TAATTTGCATATATAAAATTTCAATCCTTGGAAAAGATTTCCTGAAGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCATATATAAAATTTCAATCCTTGGAAAAGATTTCCTGAAGTTT  711

seq1  ATTCACTATTAAATGTAAAAGCTACATAAGTCCTTTTGAACATCAACTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTATTAAATGTAAAAGCTACATAAGTCCTTTTGAACATCAACTGT  761

seq1  GTACTGCAGGACTGGAAAAATTAGTGTTTGTTTTTTTGTTTTTTGTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAGGACTGGAAAAATTAGTGTTTGTTTTTTTGTTTTTTGTTTTC  811

seq1  AAAGGAAGATTGAAAGTAGAGGGAAGGATCATGTTGTATTCTTACTGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGATTGAAAGTAGAGGGAAGGATCATGTTGTATTCTTACTGGAA  861

seq1  AGGAATAAAAACAATAATGGCCTAATAATAGGCTTCTATCAGAGCCTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAAAACAATAATGGCCTAATAATAGGCTTCTATCAGAGCCTAAA  911

seq1  GAAATAAGCTAAATAAATTATTTCAATGAGCATTTAAAATTAAACTGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGCTAAATAAATTATTTCAATGAGCATTTAAAATTAAACTGTAA  961

seq1  CACCTTGACTGTTACAATTACAAGACTGTACAGTTCCTCAAAAAACAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGACTGTTACAATTACAAGACTGTACAGTTCCTCAAAAAACAGAA  1011

seq1  ATAATGAATTTTGTATTATTTGTAACTATATGAAGGAACTGAACAGACTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAATTTTGTATTATTTGTAACTATATGAAGGAACTGAACAGACTT  1061

seq1  AAATAAATGGTATAGGTATTTTCTAATTTCACTCCAGGGCTGAAATTAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGGTATAGGTATTTTCTAATTTCACTCCAGGGCTGAAATTAAA  1111

seq1  TAATATACAAATAACATTTTTATGTCCCCTGGATATATGAATATTGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACAAATAACATTTTTATGTCCCCTGGATATATGAATATTGAATT  1161

seq1  C  1200
      |
seq2  C  1162