BAC Information

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BAC

Clone NameB6Ng01-050J13
Chromosome3 (Build37)
Map Location 53,696,626 - 53,797,560
singlet/doubletdoublet
Overlap genenone
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
Downstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050J13.bB6Ng01-050J13.g
ACCDH874494DH874495
length1,013804
definitionDH874494|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J13, 5' end.DH874495|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,696,626 - 53,697,625)(53,796,971 - 53,797,560)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggaagcttgttcttttcaacaaataaggttaggtgctt
ctctgagaggagacttctttctgagaatgtggaagaatttgcagagggcg
cgtttgaaaactactgtagtggtattgaaggaaactgtcagaatccatgg
gtggaaaaatgagaacaaggaaagggaaaaggaagagaagggagtacgtt
gcctccctgtatgatttagtggttcttgaatccactcaatcactccacac
tcaccctttcagacactgtgcaagaccagtgaatgacagagtgagaattc
atgatcattccaacataaagacacggccagtacaaagaccagtgaatgac
agaaggtgagaattcatgatcattccaacataaagacacggccagtacaa
agaagaagggacgctagtggtttgggaatggtggaataggtgctgcgatt
aaatgtgattgccatcttctctagcagtgaccttaatattgtgctgagat
ttgtgatggcatc
gaattctccctcgtgagctgagataaaacgatttctggtatgaaacagtt
acttaatttttattgcatctactgatgccccactttctgtagagagaata
agatttttgaacaaattgcttattattctgtctgaaaaaaatcaatatcc
tatttaacctccaaacagaataaattagggcatatcattacaagtgtttt
taggtcccaagaagagcaaaaagccatggtgtttgtctcaattacaatag
tctttcttaagatgaaggggccgcacatggagtgacagagcatctcctgg
acaagatgtttctcaggtaagtgattatctgccctcttagtatttgtttg
tttgtttacctatttctttattttctatgtgtgactgtttgcttacatac
acgcacgtgcatgcagcacatgccagcagtttcctcagaggccataagag
gtcatcagatcctaccgaactggagttacagatggttatgaactgccatg
tgggtgtttgggaactgaatttaagtcctttgccaagactatcaagtgtt
tttaactgctgagacatcctgcccctttgctttctgtttttgtgagatac
agttctccctccacctgtggtggtttgaaagagaatgtcccaaggctggt
atatttgaatgcttagtcaaaagttagtagaactgtttgggaagggatct
gaagtgtgccctgttggagtaggtgtgtcctaggaggaatgtgtctgcga
tgaaggaggtgtgcccttgttggagaagatgtctccttgttggagaaaag
tact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53696626_53697625
seq2: B6Ng01-050J13.b_63_1057

seq1  TACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCAT  50

seq1  CAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCA  100

seq1  GAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGT  150

seq1  GGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACA  200

seq1  ACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTAC  250

seq1  TACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCC  300

seq1  CCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATT  350

seq1  TATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAAT  400

seq1  GGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATT  450

seq1  AAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAAGC  500

seq1  TTGTTCTTTTCAACAAATAAGGTTAGGTGCTTCTCTGAGAGGAGACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTTCAACAAATAAGGTTAGGTGCTTCTCTGAGAGGAGACTTCT  550

seq1  TTCTGAGAATGTGGAAGAATTTGCAGAGGGCGCGTTTGAAAACTACTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAATGTGGAAGAATTTGCAGAGGGCGCGTTTGAAAACTACTGTA  600

seq1  GTGGTATTGAAGGAAACTGTCAGAATCCATGGGTGGAAAAATGAGAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATTGAAGGAAACTGTCAGAATCCATGGGTGGAAAAATGAGAACAA  650

seq1  GG-AAGGGAAAAGGAAGAGAAGGGAGTACGTTGCCTCCCTGTTATGATTT  699
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAAAGGGAAAAGGAAGAGAAGGGAGTACGTTGCCTCCCTG-TATGATTT  699

seq1  AGTGGTTCTTGAATCCACTCAATCACTCCACACTCACCCTTTCAGACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCTTGAATCCACTCAATCACTCCACACTCACCCTTTCAGACACT  749

seq1  GTGCAAGACCAGTGAATGACAGAGGTGAGAATTCATGATCA-TCCAACAT  798
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GTGCAAGACCAGTGAATGACAGA-GTGAGAATTCATGATCATTCCAACAT  798

seq1  AAAGACACGGCCAGTACAAAGACCAGTGAATGACAG-AGGTGAGAATTCA  847
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGACACGGCCAGTACAAAGACCAGTGAATGACAGAAGGTGAGAATTCA  848

seq1  TGATCA-TCCAACATAAAGACACGGCCAGTACAAAGAAGAAGGGACGCTA  896
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTCCAACATAAAGACACGGCCAGTACAAAGAAGAAGGGACGCTA  898

seq1  GTGG-TTGGGAATGGTGAAATAGGGTGCTGCGATTAAATGTGATTGGCCA  945
      |||| |||||||||||| |||| |||||||||||||||||||||| ||||
seq2  GTGGTTTGGGAATGGTGGAATA-GGTGCTGCGATTAAATGTGATT-GCCA  946

seq1  TCTTCTCTCAGCCAGTGACTTTTAAATAATGTGCTGAGAGTTGGTGATGG  995
      |||||||| || ||||||| ||  |||| |||||||||| || ||||| |
seq2  TCTTCTCT-AG-CAGTGACCTT--AATATTGTGCTGAGA-TTTGTGAT-G  990

seq1  GCATC  1000
      |||||
seq2  GCATC  995

seq1: chr3_53796971_53797560
seq2: B6Ng01-050J13.g_67_656 (reverse)

seq1  AAAACAGAAAGCAAAGGGGCAGGATGTCTCAGCAGTTAAAAACACTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAAAGCAAAGGGGCAGGATGTCTCAGCAGTTAAAAACACTTGAT  50

seq1  AGTCTTGGCAAAGGACTTAAATTCAGTTCCCAAACACCCACATGGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGCAAAGGACTTAAATTCAGTTCCCAAACACCCACATGGCAGTT  100

seq1  CATAACCATCTGTAACTCCAGTTCGGTAGGATCTGATGACCTCTTATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCATCTGTAACTCCAGTTCGGTAGGATCTGATGACCTCTTATGGC  150

seq1  CTCTGAGGAAACTGCTGGCATGTGCTGCATGCACGTGCGTGTATGTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGAAACTGCTGGCATGTGCTGCATGCACGTGCGTGTATGTAAGC  200

seq1  AAACAGTCACACATAGAAAATAAAGAAATAGGTAAACAAACAAACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCACACATAGAAAATAAAGAAATAGGTAAACAAACAAACAAATA  250

seq1  CTAAGAGGGCAGATAATCACTTACCTGAGAAACATCTTGTCCAGGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGGCAGATAATCACTTACCTGAGAAACATCTTGTCCAGGAGATG  300

seq1  CTCTGTCACTCCATGTGCGGCCCCTTCATCTTAAGAAAGACTATTGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCACTCCATGTGCGGCCCCTTCATCTTAAGAAAGACTATTGTAAT  350

seq1  TGAGACAAACACCATGGCTTTTTGCTCTTCTTGGGACCTAAAAACACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAACACCATGGCTTTTTGCTCTTCTTGGGACCTAAAAACACTTG  400

seq1  TAATGATATGCCCTAATTTATTCTGTTTGGAGGTTAAATAGGATATTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATATGCCCTAATTTATTCTGTTTGGAGGTTAAATAGGATATTGAT  450

seq1  TTTTTTCAGACAGAATAATAAGCAATTTGTTCAAAAATCTTATTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGACAGAATAATAAGCAATTTGTTCAAAAATCTTATTCTCTCT  500

seq1  ACAGAAAGTGGGGCATCAGTAGATGCAATAAAAATTAAGTAACTGTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGTGGGGCATCAGTAGATGCAATAAAAATTAAGTAACTGTTTCA  550

seq1  TACCAGAAATCGTTTTATCTCAGCTCACGAGGGAGAATTC  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAAATCGTTTTATCTCAGCTCACGAGGGAGAATTC  590