BAC Information

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BAC

Clone NameB6Ng01-050L11
Chromosome3 (Build37)
Map Location 119,862,972 - 120,007,345
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L11.bB6Ng01-050L11.g
ACCDH874577DH874578
length3591,130
definitionDH874577|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L11, 5' end.DH874578|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,862,972 - 119,863,330)(120,006,204 - 120,007,345)
sequence
aagaagggaggagagagaaggagaggaaggagagggaggaagacagaaga
agaggaggtagaaggaagatggaacagaagcacgtggctcagagaaactg
caagttgcaagggatctcagagatggggaatatagtagtgtagtgctaga
tctgcccagtctaggcaccagcttgtattcatagtaattgagttgtgttt
tccttgcacagtcttattggggttggagatttagtgcaacatctttgtcc
tatcaaatgtcttttcatttaatatctattctagagaagtgtcccagttg
ttcagaatttgaaaaaagaaaggagaaggaggaggagaaggagaaggaag
aggaagagg
gaattcaaacgactttgctgtaacctttccaaaaagaaatggaagtttct
ggaacatcatgcaggtccccaaggacgttatctgccaacacaaacacaaa
aaggcaatagggatgagatttgtcaacacattgccaactatgtgtcacaa
agccttccacatagaatatgctgaataaatgcctctcaataaaagtgaaa
gaaggcttgataatttgttaagaggtttgcattgttgatatgagagctaa
aaacaaaacgagagttttatatgtatatggtttgaaaattctcagacaaa
tacttgggttaatcacttttctgccaccgtgacaaaacactggagagaaa
caacttgagcaaagaaagatgtagtttggtcacagttttgtggtggagcc
tgaaggcttctcagctctcatactcctacagaagttcagaaatgtcatga
caaaagagcatagccagataaagatgctcccttcctgagaaccaggaagc
aaagagagggacaggacaggacaggacaggacctgggacaaagtccactt
gaggaaagcatattcttaatagcctgcccccattcctccatccacagagc
aaccctggcgatccagttaccaccatgactactgcagtggcgaccaggac
cacaaaccacagcgcagacgctatatattcagccatcccttgtttcagta
ctcatttttaagagacagttttgatggagatgccatcaaagcatcttttt
tgttcatttgttttacttttttcattaacggcttatgcatcagtatgttg
cctgaagcttggtaaattaggctactttttgtttctttgattcacagtta
gaccttaatcccattaggacgtttatcttagttaatgaactgaaattata
gtaagactgtttgcagtattatttatttattaattatatgtagcacagta
gctgtcttcagaaactccagagaggacatcagatttgtatggatgttgtg
agccaccatgtgttgctgggatttgaactaggactttgggagaagcagcg
gcactcctaacgctgagcatcctacacaggcctgcaggatttccttaaca
tggttgtttaatctcttcaattggacagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119862972_119863330
seq2: B6Ng01-050L11.b_49_407

seq1  AAGAAGGGAGGAGAGAGAAGGAGAGGAAGGAGAGGGAGGAAGACAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGAGGAGAGAGAAGGAGAGGAAGGAGAGGGAGGAAGACAGAAGA  50

seq1  AGAGGAGGTAGAAGGAAGATGGAACAGAAGCACGTGGCTCAGAGAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGTAGAAGGAAGATGGAACAGAAGCACGTGGCTCAGAGAAACTG  100

seq1  CAAGTTGCAAGGGATCTCAGAGATGGGGAATATAGTAGTGTAGTGCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGCAAGGGATCTCAGAGATGGGGAATATAGTAGTGTAGTGCTAGA  150

seq1  TCTGCCCAGTCTAGGCACCAGCTTGTATTCATAGTAATTGAGTTGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAGTCTAGGCACCAGCTTGTATTCATAGTAATTGAGTTGTGTTT  200

seq1  TCCTTGCACAGTCTTATTGGGGTTGGAGATTTAGTGCAACATCTTTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCACAGTCTTATTGGGGTTGGAGATTTAGTGCAACATCTTTGTCC  250

seq1  TATCAAATGTCTTTTCATTTAATATCTATTCTAGAGAAGTGTCCCAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGTCTTTTCATTTAATATCTATTCTAGAGAAGTGTCCCAGTTG  300

seq1  TTCAGAATTTGAAAAAAGAAAGGAGAAGGAGGAGGAGAAGGAGAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTTGAAAAAAGAAAGGAGAAGGAGGAGGAGAAGGAGAAGGAAG  350

seq1  AGGAAGAGG  359
      |||||||||
seq2  AGGAAGAGG  359

seq1: chr3_120006204_120007345
seq2: B6Ng01-050L11.g_66_1195 (reverse)

seq1  TGCTGTCCAATTGAAGAGAATAAACACACATGTTAA-GAAATACTGCAGG  49
      ||||||||||||||||||| ||||||  |||||||| ||||| |||||||
seq2  TGCTGTCCAATTGAAGAGATTAAACAACCATGTTAAGGAAATCCTGCAGG  50

seq1  GCTG-GTGAGATGGCTCAGCGGTTAAGAGTGCCGACTGCTCTTCCAAAGG  98
       ||| ||  ||| ||||||| |||| |||||||| |||||  ||| || |
seq2  CCTGTGTAGGAT-GCTCAGC-GTTAGGAGTGCCG-CTGCTTCTCCCAAAG  97

seq1  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAA  148
      |||| ||||||||||||||||| ||||||||||||||||| |||||||| 
seq2  TCCT-AGTTCAAATCCCAGCAA-CACATGGTGGCTCACAA-CATCCATA-  143

seq1  CAAAATCTGATGTCCTCTTCTGGAGTGTCTGAAGACAGCTACTGTGCTTA  198
        ||||||||||||||| |||||||| |||||||||||||||||||| ||
seq2  -CAAATCTGATGTCCTC-TCTGGAGTTTCTGAAGACAGCTACTGTGC-TA  190

seq1  CATATAATTAATAAATAAATAAATACTGCAAACAGTCTTACTATAATTTC  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATATAATTAATAAATAAAT-AATACTGCAAACAGTCTTACTATAATTTC  239

seq1  AGTTCATTTAACCTAAGATAAACGTCCTAATGGGATTTAAGGTCTAACTG  298
      ||||||||  | ||||||||||||||||||||||| ||||||||||||||
seq2  AGTTCATT--AACTAAGATAAACGTCCTAATGGGA-TTAAGGTCTAACTG  286

seq1  TGAATCAAAGGAACAAAAAGTAGCCTAATTTACCAAGCTTCAGGCAACAT  348
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAAGAAACAAAAAGTAGCCTAATTTACCAAGCTTCAGGCAACAT  336

seq1  ACTGATGCATAAGCCGTTAATGAAAAAAGTAAAACAAATGAACAAAAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCATAAGCCGTTAATGAAAAAAGTAAAACAAATGAACAAAAAAG  386

seq1  ATGCTTTGATGGCATCTCCATCAAAACTGTCTCTTAAAAATGAGTACTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGATGGCATCTCCATCAAAACTGTCTCTTAAAAATGAGTACTGA  436

seq1  AACAAGGGATGGCTGAATATATAGCGTCTGCGCTGTGGTTTGTGGTCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGATGGCTGAATATATAGCGTCTGCGCTGTGGTTTGTGGTCCTG  486

seq1  GTCGCCACTGCAGTAGTCATGGTGGTAACTGGATCGCCAGGGTTGCTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCACTGCAGTAGTCATGGTGGTAACTGGATCGCCAGGGTTGCTCTG  536

seq1  TGGATGGAGGAATGGGGGCAGGCTATTAAGAATATGCTTTCCTCAAGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGGAATGGGGGCAGGCTATTAAGAATATGCTTTCCTCAAGTGG  586

seq1  ACTTTGTCCCAGGTCCTGTCCTGTCCTGTCCTGTCCCTCTCTTTGCTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCCCAGGTCCTGTCCTGTCCTGTCCTGTCCCTCTCTTTGCTTCC  636

seq1  TGGTTCTCAGGAAGGGAGCATCTTTATCTGGCTATGCTCTTTTGTCATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCAGGAAGGGAGCATCTTTATCTGGCTATGCTCTTTTGTCATGA  686

seq1  CATTTCTGAACTTCTGTAGGAGTATGAGAGCTGAGAAGCCTTCAGGCTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGAACTTCTGTAGGAGTATGAGAGCTGAGAAGCCTTCAGGCTCC  736

seq1  ACCACAAAACTGTGACCAAACTACATCTTTCTTTGCTCAAGTTGTTTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAACTGTGACCAAACTACATCTTTCTTTGCTCAAGTTGTTTCTC  786

seq1  TCCAGTGTTTTGTCACGGTGGCAGAAAAGTGATTAACCCAAGTATTTGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTTTTGTCACGGTGGCAGAAAAGTGATTAACCCAAGTATTTGTC  836

seq1  TGAGAATTTTCAAACCATATACATATAAAACTCTCGTTTTGTTTTTAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTTCAAACCATATACATATAAAACTCTCGTTTTGTTTTTAGCT  886

seq1  CTCATATCAACAATGCAAACCTCTTAACAAATTATCAAGCCTTCTTTCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCAACAATGCAAACCTCTTAACAAATTATCAAGCCTTCTTTCAC  936

seq1  TTTTATTGAGAGGCATTTATTCAGCATATTCTATGTGGAAGGCTTTGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGAGAGGCATTTATTCAGCATATTCTATGTGGAAGGCTTTGTGA  986

seq1  CACATAGTTGGCAATGTGTTGACAAATCTCATCCCTATTGCCTTTTTGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTTGGCAATGTGTTGACAAATCTCATCCCTATTGCCTTTTTGTG  1036

seq1  TTTGTGTTGGCAGATAACGTCCTTGGGGACCTGCATGATGTTCCAGAAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTGGCAGATAACGTCCTTGGGGACCTGCATGATGTTCCAGAAAC  1086

seq1  TTCCATTTCTTTTTGGAAAGGTTACAGCAAAGTCGTTTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCTTTTTGGAAAGGTTACAGCAAAGTCGTTTGAATTC  1130