BAC Information

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BAC

Clone NameB6Ng01-050N02
Chromosome3 (Build37)
Map Location 7,266,361 - 7,295,961
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
Downstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050N02.bB6Ng01-050N02.g
ACCDH874649DH874650
length7611,047
definitionDH874649|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N02, 5' end.DH874650|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,266,361 - 7,267,118)(7,294,901 - 7,295,961)
sequence
gaattctagactatgtatcatttaccttgagaatatttgatgtatcagtg
tatcatttgagatgacagaattggtattgagagttctgccacaattctga
ttcacagtattatatatattactatttataaaagtataaagtatttttaa
tgaccaaacatctacatacacttgcatatatgtggttgggaattgtagtc
tcccctcccccagcctgaaacctgcttgctcaggggtggagcttcctgct
cattcgttctgccactcccactgctggaacctgccactttaatgttcgga
gccacacacatgctcacctttctactggatccgagattattcggcgggaa
tcaggtcccctcccccttccttcataactattgtagcaacaataaaattt
gagctttgatcagaatgaatttgtcttagctccatttcttctttcgcccc
atctagattcctctcttacagctcaagtagccatatcagtcgaaccgttc
atgttgcgagctgctggcggccgcaacagggaatagtcaaagaattatag
tgtgcagttcgtaaaaattcagactagtttttattaacagagtaaaaact
ttgagatgtcaaggatagagagaagatagcttataattgcttcctggaaa
tagacactggcaagcaaataaacatcaaacagttatgaaggaagggacat
gtaagccagatacaaccctgggtttttatttatcatttacttcatttcgg
tgtcacttatt

gaattcaaggatatttccaactttctcctctatgagattagtgtatcaag
ttttattttgaggcctttgaaccacttggactcgagttttatgcagggtg
ataaatatggatctatttggattattagagcagcaccatttgttgaagat
gctttcttttttccattgtataggtttggtttcattatcaaatatcaagg
gctcatatgaatgtgggtttatttctgcgtctttgatttgattttattat
taacatcgcagtaaattgagttcaaaagcacattaaaatgttatatacca
ttatgaaattttatttacatttgtatgctaatttttaattgcaattcaat
ttgtgttgtaattaattaattggagaattcacataataattgccatgtga
caagtatatagttatcagcatactcaatggtaaaatcaaaaggatttccc
ctaaaggtatgagctcactcatagcatttatgcccaatattatactgcaa
agactgcacagaaagattacttgctaccaatattctactagaggcatcat
ttgtgtctttgggtcataactcaaaaccctacagtacagaatcatttctc
aggaatcaaatgaatcttttataatcatgaagagactattcatgctacta
agatacatttaatatagaaactcagtggctagtttttttaaagtaagttg
gctaagcctttaaaagcatttttgaacaatcatagatatttagtatatta
tcggatcttaatagatcttaattttcttttgcccagtgcatgtattcaag
acttttccttaaagttgatggcatcactggggatgacattgaattcaaag
agggtgaagacggttggagtaagttctaccactactcatggcctctgggc
aatctgtctcggctttttggcagcagcaaattaaagcattgcctatgcta
tatgcttcttacgtaaagtccctccattctcacaacccagagcaaggaca
gagactcgacttctgaactcagctcaatcatcttccctttagactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_7266361_7267118
seq2: B6Ng01-050N02.b_39_799

seq1  GAATTCTAGACTATGTATCATTTACCTTGAGAATATTTGATGTATCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACTATGTATCATTTACCTTGAGAATATTTGATGTATCAGTG  50

seq1  TATCATTTGAGATGACAGAATTGGTATTGAGAGTTCTGCCACAATTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTGAGATGACAGAATTGGTATTGAGAGTTCTGCCACAATTCTGA  100

seq1  TTCACAGTATTATATATATTACTATTTATAAAAGTATAAAGTATTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTATTATATATATTACTATTTATAAAAGTATAAAGTATTTTTAA  150

seq1  TGACCAAACATCTACATACACTTGCATATATGTGGTTGGGAATTGTAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAACATCTACATACACTTGCATATATGTGGTTGGGAATTGTAGTC  200

seq1  TCCCCTCCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCTGCT  250

seq1  CATTCGTTCTGCCACTCCCACTGCTGGAACCTGCCACTTTAATGTTCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTTCTGCCACTCCCACTGCTGGAACCTGCCACTTTAATGTTCGGA  300

seq1  GCCACACACATGCTCACCTTTCTACTGGATCCGAGATTATTCGGCGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACACATGCTCACCTTTCTACTGGATCCGAGATTATTCGGCGGGAA  350

seq1  TCAGGTCCCCTCCCCCTTCCTTCATAACTATTGTAGCAACAATAAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCCCTCCCCCTTCCTTCATAACTATTGTAGCAACAATAAAATTT  400

seq1  GAGCTTTGATCAGAATGAATTTGTCTTAGCTCCATTTCTTCTTTCGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGATCAGAATGAATTTGTCTTAGCTCCATTTCTTCTTTCGCCCC  450

seq1  ATCTAGATTCCTCTCTTACAGCTCAAGTAGCCATATCAGTCGAACCGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGATTCCTCTCTTACAGCTCAAGTAGCCATATCAGTCGAACCGTTC  500

seq1  ATGTTGCGAGCTGCTGGCGGCCGCAACAGGGAATAGTCAAAGAATTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCGAGCTGCTGGCGGCCGCAACAGGGAATAGTCAAAGAATTATAG  550

seq1  TGTGCAGTTCGTAAAAATTCAGACTAGTTTTTATTAACAGAGTAAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTTCGTAAAAATTCAGACTAGTTTTTATTAACAGAGTAAAAACT  600

seq1  TTGAGATGTCAAGGATAGAGAGAAGATAGCTTATAATTGCTTCCTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGTCAAGGATAGAGAGAAGATAGCTTATAATTGCTTCCTGGAAA  650

seq1  TAGACACTGGCAAGC-AATAAACATC-AACAGTTATGAAGG-AGGGACAT  697
      ||||||||||||||| |||||||||| |||||||||||||| ||||||||
seq2  TAGACACTGGCAAGCAAATAAACATCAAACAGTTATGAAGGAAGGGACAT  700

seq1  GTAAGCCAGATACAACCCATGGTTTTTATTTATCATTTACTTCATTTCTG  747
      ||||||||||||||||||  |||||||||||||||||||||||||||| |
seq2  GTAAGCCAGATACAACCCTGGGTTTTTATTTATCATTTACTTCATTTCGG  750

seq1  TGTCACTTATT  758
      |||||||||||
seq2  TGTCACTTATT  761


seq1: chr3_7294901_7295961
seq2: B6Ng01-050N02.g_67_1113 (reverse)

seq1  TGAGTTCTAAAGGGAAAGATGTATTTGAGCTGAAGGTTTCAGAAGTCGAT  50
      |||| ||||||||| ||||||   |||||||||    |||||||||||| 
seq2  TGAG-TCTAAAGGG-AAGATG--ATTGAGCTGA---GTTCAGAAGTCGA-  42

seq1  GTTCTCTTGGTTCCTTTGCTCTGGGTGTGTGGAGATGGA-GGACTTTACC  99
        |||||  ||  | ||||||||||| ||||   ||||| |||||||| |
seq2  -GTCTCT--GT--CCTTGCTCTGGGT-TGTGAGAATGGAGGGACTTTA-C  85

seq1  GTAAGGAGCATATAGCATA-GCAATGCTTTTAATTTGCTGCTGGCCAAAA  148
      ||||| ||||||||||||| ||||||| |||||||||||||| |||||||
seq2  GTAAGAAGCATATAGCATAGGCAATGC-TTTAATTTGCTGCT-GCCAAAA  133

seq1  AGCCGAGGACAGATTGCCCCAGAGGCCCTGAGTAGTGGTAGAACTTACTC  198
      |||||| ||||||||| |||||||||| ||||||||||||||||||||||
seq2  AGCCGA-GACAGATTG-CCCAGAGGCCATGAGTAGTGGTAGAACTTACTC  181

seq1  CAACTGTCTTCACCCTCTTTGAATTCAATGTCAT-CCCAGTGATGCCATC  247
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAACCGTCTTCACCCTCTTTGAATTCAATGTCATCCCCAGTGATGCCATC  231

seq1  AAC-TTAAGGAAAAGTCTTGAATACATGCACTGTGC-AAAGATAATTAAG  295
      ||| ||||||||||||||||||||||||||||| || ||||| |||||||
seq2  AACTTTAAGGAAAAGTCTTGAATACATGCACTGGGCAAAAGAAAATTAAG  281

seq1  ATCTATTAAGATCCGATAATATACTAAATATCTATGATTGTTCAAAAATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAAGATCCGATAATATACTAAATATCTATGATTGTTCAAAAATG  331

seq1  CTTTTAAAGGCTTAGCCAACTTACTTTAAAAAAACTAGCCACTGAGTTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGGCTTAGCCAACTTACTTTAAAAAAACTAGCCACTGAGTTTC  381

seq1  TATATTAAATGTATCTTAGTAGCATGAATAGTCTCTTCATGATTATAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAATGTATCTTAGTAGCATGAATAGTCTCTTCATGATTATAAAA  431

seq1  GATTCATTTGATTCCTGAGAAATGATTCTGTACTGTAGGGTTTTGAGTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTTGATTCCTGAGAAATGATTCTGTACTGTAGGGTTTTGAGTTA  481

seq1  TGACCCAAAGACACAAATGATGCCTCTAGTAGAATATTGGTAGCAAGTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAAAGACACAAATGATGCCTCTAGTAGAATATTGGTAGCAAGTAA  531

seq1  TCTTTCTGTGCAGTCTTTGCAGTATAATATTGGGCATAAATGCTATGAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTGCAGTCTTTGCAGTATAATATTGGGCATAAATGCTATGAGT  581

seq1  GAGCTCATACCTTTAGGGGAAATCCTTTTGATTTTACCATTGAGTATGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATACCTTTAGGGGAAATCCTTTTGATTTTACCATTGAGTATGCT  631

seq1  GATAACTATATACTTGTCACATGGCAATTATTATGTGAATTCTCCAATTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTATATACTTGTCACATGGCAATTATTATGTGAATTCTCCAATTA  681

seq1  ATTAATTACAACACAAATTGAATTGCAATTAAAAATTAGCATACAAATGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTACAACACAAATTGAATTGCAATTAAAAATTAGCATACAAATGT  731

seq1  AAATAAAATTTCATAATGGTATATAACATTTTAATGTGCTTTTGAACTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATTTCATAATGGTATATAACATTTTAATGTGCTTTTGAACTCA  781

seq1  ATTTACTGCGATGTTAATAATAAAATCAAATCAAAGACGCAGAAATAAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGCGATGTTAATAATAAAATCAAATCAAAGACGCAGAAATAAAC  831

seq1  CCACATTCATATGAGCCCTTGATATTTGATAATGAAACCAAACCTATACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCATATGAGCCCTTGATATTTGATAATGAAACCAAACCTATACA  881

seq1  ATGGAAAAAAGAAAGCATCTTCAACAAATGGTGCTGCTCTAATAATCCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAAGAAAGCATCTTCAACAAATGGTGCTGCTCTAATAATCCAA  931

seq1  ATAGATCCATATTTATCACCCTGCATAAAACTCGAGTCCAAGTGGTTCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCCATATTTATCACCCTGCATAAAACTCGAGTCCAAGTGGTTCAA  981

seq1  AGGCCTCAAAATAAAACTTGATACACTAATCTCATAGAGGAGAAAGTTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCAAAATAAAACTTGATACACTAATCTCATAGAGGAGAAAGTTGG  1031

seq1  AAATATCCTTGAATTC  1061
      ||||||||||||||||
seq2  AAATATCCTTGAATTC  1047


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