BAC Information

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BAC

Clone NameB6Ng01-051L21
Chromosome3 (Build37)
Map Location 49,610,931 - 49,742,999
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051L21.bB6Ng01-051L21.g
ACCDH875294DH875295
length559382
definitionDH875294|Mus musculus domesticus DNA, BAC clone: B6Ng01-051L21, 5' end.DH875295|Mus musculus domesticus DNA, BAC clone: B6Ng01-051L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,742,442 - 49,742,999)(49,610,931 - 49,611,318)
sequence
gaattctggctgctcttgcagagaactagagttggtttccagcacccaca
tggaagctcacaactatctgtagctcttgttccaggggaaccagtgccct
ttccgtgatcactgtacatacatggaacagagttataggtcctggcaaga
gactcacacaaaataaaaaaaaaataaaatgaaaagtaaaatttgttaaa
cttctgctttaagtgtgtagaagacgaggttgccgaaggctttgcagatc
gtttcaagtgctgatttactaaattccaaaaaaaccacaatattaaaatt
tacgtggttctttcttgttttataatttctaatccattatagaatattat
gtgtcttatactcaatatgtgtttactaaactatggttgatttatgaatt
actctaaataaagcattttagaaacccccccccgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtggtgtgtgtgtgaggtcagtctacattatgtaact
gagatagtaataacttttttaaacaatagattctcttttacccttaaatg
tgtcataac
cagagtcagtggtgttcaccctggatggactgagagacgttttcacaatg
aaacagatatgaatcaccacgtgtttccctgttagcttttattttcacat
ccaattctgtctcttaacttctctgaaagaaaacagtagggagaaggaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaaagagagaaagagagagagaaaaagaaagaaag
agagaaagagagagaaagaaagaatgaataggaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagagagaaa
gaaagagggagagggagagggagagggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49742442_49742999
seq2: B6Ng01-051L21.b_37_595 (reverse)

seq1  GTTATGACACATTTGAGGGT-AAAGAGGATCTATTGTTTAAAAATGTTAT  49
      |||||||||||||| ||||| |||||| |||||||||||||||| |||||
seq2  GTTATGACACATTTAAGGGTAAAAGAGAATCTATTGTTTAAAAAAGTTAT  50

seq1  TACTATCTCAGTTACATAATGTAGACTGACCTCACACACACACCACACAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTCAGTTACATAATGTAGACTGACCTCACACACACACCACACAC  100

seq1  ACACACACACACACACACACACACACGGGGGGGGGTTTCTAAAATGCTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACGGGGGGGGGTTTCTAAAATGCTTT  150

seq1  ATTTAGAGTAATTCATAAATCAACCATAGTTTAGTAAACACATATTGAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGTAATTCATAAATCAACCATAGTTTAGTAAACACATATTGAGT  200

seq1  ATAAGACACATAATATTCTATAATGGATTAGAAATTATAAAACAAGAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACACATAATATTCTATAATGGATTAGAAATTATAAAACAAGAAAG  250

seq1  AACCACGTAAATTTTAATATTGTGGTTTTTTTGGAATTTAGTAAATCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGTAAATTTTAATATTGTGGTTTTTTTGGAATTTAGTAAATCAGC  300

seq1  ACTTGAAACGATCTGCAAAGCCTTCGGCAACCTCGTCTTCTACACACTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAACGATCTGCAAAGCCTTCGGCAACCTCGTCTTCTACACACTTA  350

seq1  AAGCAGAAGTTTAACAAATTTTACTTTTCATTTTATTTTTTTTTTATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGTTTAACAAATTTTACTTTTCATTTTATTTTTTTTTTATTTT  400

seq1  GTGTGAGTCTCTTGCCAGGACCTATAACTCTGTTCCATGTATGTACAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTCTCTTGCCAGGACCTATAACTCTGTTCCATGTATGTACAGTG  450

seq1  ATCACGGAAAGGGCACTGGTTCCCCTGGAACAAGAGCTACAGATAGTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGAAAGGGCACTGGTTCCCCTGGAACAAGAGCTACAGATAGTTGT  500

seq1  GAGCTTCCATGTGGGTGCTGGAAACCAACTCTAGTTCTCTGCAAGAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCCATGTGGGTGCTGGAAACCAACTCTAGTTCTCTGCAAGAGCAG  550

seq1  CCAGAATTC  558
      |||||||||
seq2  CCAGAATTC  559

seq1: chr3_49610931_49611318
seq2: B6Ng01-051L21.g_64_451

seq1  GAATTCCAGAGTCAGTGGTGTTCACCCTGGATGGACTGAGAGACGTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTCAGTGGTGTTCACCCTGGATGGACTGAGAGACGTTTTC  50

seq1  ACAATGAAACAGATATGAATCACCACGTGTTTCCCTGTTAGCTTTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAACAGATATGAATCACCACGTGTTTCCCTGTTAGCTTTTATTT  100

seq1  TCACATCCAATTCTGTCTCTTAACTTCTCTGAAAGAAAACAGTAGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCAATTCTGTCTCTTAACTTCTCTGAAAGAAAACAGTAGGGAGA  150

seq1  AGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200

seq1  GAAAGAAAGAAAGAAAGAAAGAAAAGAGAGAAAGAGAGAGAGAAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAAGAGAGAAAGAGAGAGAGAAAAAGAA  250

seq1  AGAAAGAGAGAAAGAGAGAGAAAGAAAGAATGAATAGGAAGAAAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAAAGAGAGAGAAAGAAAGAATGAATAGGAAGAAAGAAAGA  300

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGA  350

seq1  GAGAAAGAAAGAGGGAGAGGGAGAGGGAGAGGGAGAGG  388
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAAGAGGGAGAGGGAGAGGGAGAGGGAGAGG  388