BAC Information

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BAC

Clone NameB6Ng01-051N12
Chromosome3 (Build37)
Map Location 35,733,986 - 35,877,964
singlet/doubletdoublet
Overlap geneAtp11b, LOC665667, Dcun1d1, Mccc1
Upstream geneLOC665655, Ube2l3-ps1, LOC625963
Downstream geneBC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051N12.bB6Ng01-051N12.g
ACCDH875368DH875369
length1,1351,027
definitionDH875368|Mus musculus domesticus DNA, BAC clone: B6Ng01-051N12, 5' end.DH875369|Mus musculus domesticus DNA, BAC clone: B6Ng01-051N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,876,823 - 35,877,964)(35,733,986 - 35,735,014)
sequence
gaattcattatggactcaaggcacaatttttatttcatggagatgaacac
caggctacaagtggaacatcctgtcactgaaatgatcacagggactgact
tggtggagtggcaactcagggtgagaaggttttcctggtagatgtcagtc
ctgggctgtggatgcagcttagtgttgcgatgcctggctagcaggagtgg
tccctgggtgcagccctccaagcactaccagaaataagatcagtgttgag
aacacattacattccagactcctttcaggctgctttgggtgggactcagt
tttgtggatgtgatggggacagagaaatagaagatttttttttttttaaa
gtgcatctggccgggcggtggtggcgcacgcctttaatcccagcacttgg
gaggcagagacaggtggatttctgagttcaaggccagcctggtctacaga
gtgagttccagtatagccggggctacaaagagaaaccctgtcttgaaaaa
ccaaaaaaaaaaaaaaaaaatgtgcatctgatgttgtaatgttattggca
ctttaagaacacaaattcctcatttgtcaattaccttcacctccccttgg
gccctgggctgcaggcaagtaagctgtatcactgtatcttgttctaatca
cattcacatggctctcctggaactccctttgtatcgcagtgtgtcctcta
actcactgaggtcctgagtaggggttaaagctgtgccacaccacaccctg
gctgctcagcgacttcttcaaaatggagttttgtggttcaaactgctgag
ttcaggtgacagtgcagatggccagcagggttcagggatgccagtgaagc
aaacttcaaggctttcagatacttagtatctgtctgagagtgataatggc
acagaattccccaccgaaggtgtaattaggaccagtccctctcagacttg
gatggaagccagtctcagggaaaaaatccattaaagataagccagtttga
aattgtctgtgtaataagaaataagacgatgcatctctaaaccatggagg
gtgcatggtcaaacttttttctttggcaaagaagaccatagactcatcag
tttatcaaagtttccgtttgaactagaaaggaagg
gaattctgagctgttatcaagatacttgttattattagaaaggtttgtaa
atttagtttgttctttttgctgatattttttagccatcttaaaattcata
aattattagttaaattagtttagaagataaaatgaaccctaatgtgttga
tttttctttttacaactaattgcagggacattagtaaaaacggtctcttg
agcattaaagcatttctttactggaccgtcctgggtttcagccatgcctt
cattttcttctttggatcctactttctagtggggaaggatacatctttgc
ttggaaatggtcaggtaaaacatgtttcgcaaatgtttgaaaccgttaat
aatgttgaaaagaatgtaagcttaaatcacttttgcttagcccaaccccc
aagcgccccctgcctccgctgagttcagggggacgtcagagtgggaagag
ttgggtcttcatgagctcacccctcactccaaaacagggcacccgatgtg
atgtatgcaggcgaaatgctgcctccctcctttctgtggaaataggacat
ggcctgccttaagtgagaccagatcctcgggattaggcccacagtcttag
cagttccgggttgaagttgcctgcttatatcatagtgcttgctgctgtag
ccctgaaacactgccactcaggacttcagttgatagccattgatttttgg
aatttccaagtctgcatacctaaaaaagtgagaaataaacatagattcag
tatgatttctatatgagtctgcttggaaatctgcaaggtaccctcaaagg
aatgtaaattgatgttccattattaataagcagtgtgtgtttaccattcg
cttttatacaccagatactttgtccattctgcatactttgatgtcactta
tcatcattttaaaaatgatgtgagggctggggagatggctcagcggggaa
gagcactgtctgctcttctgaaggtcctgagttcaaatcccagcaacaca
tggtgggttacaaccacccataatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35876823_35877964
seq2: B6Ng01-051N12.b_44_1178 (reverse)

seq1  CCTTCCTATGT--TTCAAACGGAAACTTTTTGATAAACTGATTGAGTTCT  48
      ||||||| | |  |||||||||||||  ||||||||||||| |||| |||
seq2  CCTTCCTTTCTAGTTCAAACGGAAAC--TTTGATAAACTGA-TGAG-TCT  46

seq1  AATTGTCTTCTTTTGCAAAAGAAAAAAGTGTTGACCATGCACC--TCATG  96
       || |||||| ||||| |||||||||||| |||||||||||||   ||||
seq2  -ATGGTCTTC-TTTGCCAAAGAAAAAAGT-TTGACCATGCACCCTCCATG  93

seq1  GTTTAGGAGATGCATCGTCTTATTTCTTATTACACAGACCATTTTCAAAC  146
      ||||| |||||||||||||||||||||||||||||||| || ||||||||
seq2  GTTTA-GAGATGCATCGTCTTATTTCTTATTACACAGA-CAATTTCAAAC  141

seq1  TGGCTTATCTTTAATGGATTTTTTTCCCTTGAGACTGGCTTCCATCCAAG  196
      ||||||||||||||||||||||||  || |||||||||||||||||||||
seq2  TGGCTTATCTTTAATGGATTTTTT--CCCTGAGACTGGCTTCCATCCAAG  189

seq1  TCTGAGAGGGACTGGTCCTAATTACACCTTCGGTGGGGAATTCTGTGCCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGGACTGGTCCTAATTACACCTTCGGTGGGGAATTCTGTGCCA  239

seq1  TTATCACTCTCAGACAGATACTAAGTATCTGAAAGCCTTGAAGTTTGCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTCTCAGACAGATACTAAGTATCTGAAAGCCTTGAAGTTTGCTT  289

seq1  CACTGGCATCCCTGAACCCTGCTGGCCATCTGCACTGTCACCTGAACTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCATCCCTGAACCCTGCTGGCCATCTGCACTGTCACCTGAACTCA  339

seq1  GCAGTTTGAACCACAAAACTCCATTTTGAAGAAGTCGCTGAGCAGCCAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTGAACCACAAAACTCCATTTTGAAGAAGTCGCTGAGCAGCCAGG  389

seq1  GTGTGGTGTGGCACAGCTTTAACCCCTACTCAGGACCTCAGTGAGTTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGTGGCACAGCTTTAACCCCTACTCAGGACCTCAGTGAGTTAGA  439

seq1  GGACACACTGCGATACAAAGGGAGTTCCAGGAGAGCCATGTGAATGTGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACTGCGATACAAAGGGAGTTCCAGGAGAGCCATGTGAATGTGAT  489

seq1  TAGAACAAGATACAGTGATACAGCTTACTTGCCTGCAGCCCAGGGCCCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAGATACAGTGATACAGCTTACTTGCCTGCAGCCCAGGGCCCAA  539

seq1  GGGGAGGTGAAGGTAATTGACAAATGAGGAATTTGTGTTCTTAAAGTGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTGAAGGTAATTGACAAATGAGGAATTTGTGTTCTTAAAGTGCC  589

seq1  AATAACATTACAACATCAGATGCACATTTTTTTTTTTTTTTTTTGGTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTACAACATCAGATGCACATTTTTTTTTTTTTTTTTTGGTTTT  639

seq1  TCAAGACAGGGTTTCTCTTTGTAGCCCCGGCTATACTGGAACTCACTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAGGGTTTCTCTTTGTAGCCCCGGCTATACTGGAACTCACTCTG  689

seq1  TAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGTCTCTGCCTCCCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGTCTCTGCCTCCCAA  739

seq1  GTGCTGGGATTAAAGGCGTGCGCCACCACCGCCCGGCCAGATGCACTTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCGTGCGCCACCACCGCCCGGCCAGATGCACTTTA  789

seq1  AAAAAAAAAAAATCTTCTATTTCTCTGTCCCCATCACATCCACAAAACTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAATCTTCTATTTCTCTGTCCCCATCACATCCACAAAACTG  839

seq1  AGTCCCACCCAAAGCAGCCTGAAAGGAGTCTGGAATGTAATGTGTTCTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACCCAAAGCAGCCTGAAAGGAGTCTGGAATGTAATGTGTTCTCA  889

seq1  ACACTGATCTTATTTCTGGTAGTGCTTGGAGGGCTGCACCCAGGGACCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATCTTATTTCTGGTAGTGCTTGGAGGGCTGCACCCAGGGACCAC  939

seq1  TCCTGCTAGCCAGGCATCGCAACACTAAGCTGCATCCACAGCCCAGGACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTAGCCAGGCATCGCAACACTAAGCTGCATCCACAGCCCAGGACT  989

seq1  GACATCTACCAGGAAAACCTTCTCACCCTGAGTTGCCACTCCACCAAGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTACCAGGAAAACCTTCTCACCCTGAGTTGCCACTCCACCAAGTC  1039

seq1  AGTCCCTGTGATCATTTCAGTGACAGGATGTTCCACTTGTAGCCTGGTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGTGATCATTTCAGTGACAGGATGTTCCACTTGTAGCCTGGTGT  1089

seq1  TCATCTCCATGAAATAAAAATTGTGCCTTGAGTCCATAATGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCATGAAATAAAAATTGTGCCTTGAGTCCATAATGAATTC  1135

seq1: chr3_35733986_35735014
seq2: B6Ng01-051N12.g_70_1096

seq1  GAATTCTGAGCTGTTATCAAGATACTTGTTATTATTAGAAAGGTTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCTGTTATCAAGATACTTGTTATTATTAGAAAGGTTTGTAA  50

seq1  ATTTAGTTTGTTCTTTTTGCTGATATTTTTTAGCCATCTTAAAATTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTGTTCTTTTTGCTGATATTTTTTAGCCATCTTAAAATTCATA  100

seq1  AATTATTAGTTAAATTAGTTTAGAAGATAAAATGAACCCTAATGTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAGTTAAATTAGTTTAGAAGATAAAATGAACCCTAATGTGTTGA  150

seq1  TTTTTCTTTTTACAACTAATTGCAGGGACATTAGTAAAAACGGTCTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTACAACTAATTGCAGGGACATTAGTAAAAACGGTCTCTTG  200

seq1  AGCATTAAAGCATTTCTTTACTGGACCGTCCTGGGTTTCAGCCATGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAAGCATTTCTTTACTGGACCGTCCTGGGTTTCAGCCATGCCTT  250

seq1  CATTTTCTTCTTTGGATCCTACTTTCTAGTGGGGAAGGATACATCTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTCTTTGGATCCTACTTTCTAGTGGGGAAGGATACATCTTTGC  300

seq1  TTGGAAATGGTCAGGTAAAACATGTTTCGCAAATGTTTGAAACCGTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATGGTCAGGTAAAACATGTTTCGCAAATGTTTGAAACCGTTAAT  350

seq1  AATGTTGAAAAGAATGTAAGCTTAAATCACTTTTGCTTAGCCCAACCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAAAAGAATGTAAGCTTAAATCACTTTTGCTTAGCCCAACCCCC  400

seq1  AAGCGCCCCCTGCCTCCGCTGAGTTCAGGGGGACGTCAGAGTGGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCCCCCTGCCTCCGCTGAGTTCAGGGGGACGTCAGAGTGGGAAGAG  450

seq1  TTGGGTCTTCATGAGCTCACCCCTCACTCCAAAACAGGGCACCCGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTTCATGAGCTCACCCCTCACTCCAAAACAGGGCACCCGATGTG  500

seq1  ATGTATGCAGGCGAAATGCTGCCTCCCTCCTTTCTGTGGAAATAGGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCAGGCGAAATGCTGCCTCCCTCCTTTCTGTGGAAATAGGACAT  550

seq1  GGCCTGCCTTAAGTGAGACCAGATCCTCGGGATTAGGCCCACAGTCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCTTAAGTGAGACCAGATCCTCGGGATTAGGCCCACAGTCTTAG  600

seq1  CAGTTCCGGGTTGAAGTTGCCTGCTTATATCATAGTGCTTGCTGCTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCGGGTTGAAGTTGCCTGCTTATATCATAGTGCTTGCTGCTGTAG  650

seq1  CCCTGAAACACTGCCACTCAGGACTTCAGTTGATAGCCATTGATTTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAACACTGCCACTCAGGACTTCAGTTGATAGCCATTGATTTTTGG  700

seq1  AATTTCCAAGTCTGCATACCTAAAAAAGTGAGAAATAAACATAGATTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAAGTCTGCATACCTAAAAAAGTGAGAAATAAACATAGATTCAG  750

seq1  TATGATTTCTATATGAGTCTGCTTGGAAATCTGCAAGGTACCCTCAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTCTATATGAGTCTGCTTGGAAATCTGCAAGGTACCCTCAAAGG  800

seq1  AATGTAAATTGATGTTCCATTATTAATAAGCAGTGTGTGTTTACCATTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATTGATGTTCCATTATTAATAAGCAGTGTGTGTTTACCATTCG  850

seq1  CTTTTATACACCAGATACTTTGTCCATTCTGCATACTTTGAATGTCACTT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTTATACACCAGATACTTTGTCCATTCTGCATACTTTG-ATGTCACTT  899

seq1  ATCATCATTTTAAAAATGATGTGAGGGCTGGGGAGATGGCTCAGCGGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTTTAAAAATGATGTGAGGGCTGGGGAGATGGCTCAGCGGGGA  949

seq1  AGAGCACTGTCTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGCACTGTCTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAA-CA  998

seq1  CATGGTGGCTCACAACCACCCATAATGAC  1029
      |||||||| | ||||||||||||||||||
seq2  CATGGTGGGTTACAACCACCCATAATGAC  1027