BAC Information

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BAC

Clone NameB6Ng01-051N23
Chromosome3 (Build37)6 (Build37)
Map Location 45,387,111 - 45,387,64910,752,653 - 10,753,782
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051N23.bB6Ng01-051N23.g
ACCDH875390DH875391
length1,0701,115
definitionDH875390|Mus musculus domesticus DNA, BAC clone: B6Ng01-051N23, 5' end.DH875391|Mus musculus domesticus DNA, BAC clone: B6Ng01-051N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,387,111 - 45,387,649)(10,752,653 - 10,753,782)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctagttcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
tctgagatcttctttaatttctttcttcagggacttgaagtttttatcat
acagatctttcacttccttcgttagagtcacgacgagatattttatatta
tttgtggctattgagaagggtgtttgtttccctaatttctttctcagcct
ggttattctttgtgtagagaaaggccaatgacttgtttgagttagtttac
atccagcctactccaccgag
gaattctttccatttattgatagggatttaggagagcctatgaaacaaac
taacttacatactctggaagctagactgtggcagggaaaaataatttgtt
tcccaatttctcctgaatctcatgagctgagcttagtatttgcaatgtgc
cacttaatctatttaaaaccttgaaggagagaggagagagagaaaacttt
aaatagtactcacatactatcttgagaagcaagaaaggaactgcagctat
ttgaatccagatttaaaagagtacttgtgtatcctgttgatccttcactg
cctttaaacttatttcccactaaattgtcctacaaatattatagcacgag
atattaaacctatggtatagatttatgtatgccacaagagacataacata
ttaaatgcttacgatactattcttgctcagttagtatgttaggggaagac
ttcatctcaacaattatataggtttgatccctgttgtgtgctattaccct
taactaacaataagcttttaagagcgttatagaactgcagtattttaaag
attcatttgtggatttttatggaagacaggaaatcattatccagctgtta
aactatggaattttctctcaggactaaattttttattttaaaattccaac
cttctttcatgccatatgcatatccttattttattgagtcctctaatggt
ataggaaagattatagtgcacatattcatcactctattaacacttctttt
tcttcagtacaactgttggaactggctcttacatctattacagtaaattc
ataaacttttaaatatcatttcagattctgcttgtgttgtaggagtttca
gcaagaacatcatacccatgcacactgtaacttttttgtatttattgcag
aaggaatagcaagctgatacattaatctccagtatttttctttttcagaa
aaaaatacttaggaaggggtatgtgtctgtcatggtagatagatagatcc
actgaaacattatggattctctctttccctagcctgatattatgacatga
caatggtgaagagacagtcaagtctacaagaagaaagcacctccgctaaa
gggcaaaggcctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45387111_45387649
seq2: B6Ng01-051N23.b_573_1113 (reverse)

seq1  TCGGTGAAGTA-GCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTT  49
      |||||| |||| ||||||| | ||| |||||||||||||||| |||||||
seq2  TCGGTGGAGTAGGCTGGATGT-AAACTAACTCAAACAAGTCATTGGCCTT  49

seq1  TCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAAC-AACA  98
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TCTCTACACAAAGAATAACCAGGCTGAGAAAGAAATTAGGGAAACAAACA  99

seq1  CCCTTCTCAATAGCCACAAATAATATAAAATATCTCGGCGTGACTCTAAC  148
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCTTCTCAATAGCCACAAATAATATAAAATATCTCGTCGTGACTCTAAC  149

seq1  GAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAG  199

seq1  AAATTAAAGAAGATCTCAG-AAGATGGAAAGATCTCCCATGCTCATGGAT  247
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATTAAAGAAGATCTCAGAAAGATGGAAAGATCTCCCATGCTCATGGAT  249

seq1  TGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACA  299

seq1  GATTCAATGCAATCCCCATTAAAATTCCAACTCAATTCTTCAACGAACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAATGCAATCCCCATTAAAATTCCAACTCAATTCTTCAACGAACTA  349

seq1  GAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATAGC  399

seq1  AAAAACTCTTCTCAAGGATAAAAGAACTTCTGGTGGAATCACCATGCCTG  447
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTG  449

seq1  ACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  499

seq1  TATAGAGACAGACAAGTGGACCAATGGAATAGAATTGAAGAC  539
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACAGACAAGTGGACCAATGGAATAGAATTGAAGAC  541

seq1: chr6_10752653_10753782
seq2: B6Ng01-051N23.g_67_1181 (reverse)

seq1  CATAGCCCTTTGCCCTTTAGCTGGAGGTTTGCTATCTTTCTAGT-GACTT  49
      ||||| ||||||||||||||| |||||  |||| || |||| || ||| |
seq2  CATAGGCCTTTGCCCTTTAGC-GGAGG--TGCTTTC-TTCTTGTAGAC-T  45

seq1  TGACTGTCTCTTCACCCTTTGTCATTGTCCATAATATCCAGGCTAGAGAA  99
      |||||||||||||| || |||||| ||| |||||||| |||||||| || 
seq2  TGACTGTCTCTTCA-CCATTGTCA-TGT-CATAATAT-CAGGCTAGGGA-  90

seq1  AAGGAAGAGA-AATCCATAATGTTTCAGTGGATCTATCTATCTACCATGA  148
          |||||| |||||||||||||||||||||||||||||||||||||||
seq2  ----AAGAGAGAATCCATAATGTTTCAGTGGATCTATCTATCTACCATGA  136

seq1  CAGACACATACCCCTTCCT-AGTATTTTTTTTCTTGAAAAAGAAAAATAC  197
      ||||||||||||||||||| |||||||||||   ||||||||||||||||
seq2  CAGACACATACCCCTTCCTAAGTATTTTTTT--CTGAAAAAGAAAAATAC  184

seq1  TGGAGATTAATGTATCAGCTTGCTTATTTCCTTCTGCAATAAATACAAAA  247
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  TGGAGATTAATGTATCAGCTTGCT--ATTCCTTCTGCAATAAATACAAAA  232

seq1  AAGTTACAGTGTGCATGGGTATGATGTTCTTGCTGAAACTCCTACAACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAGTGTGCATGGGTATGATGTTCTTGCTGAAACTCCTACAACAC  282

seq1  AAGCAGAATCTGAAATGATATTTAAAAGTTTATGAATTTACTGTAATAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAATCTGAAATGATATTTAAAAGTTTATGAATTTACTGTAATAGA  332

seq1  TGTAAGAGCCAGTTCCAACAGTTGTACTGAAGAAAAAGAAGTGTTAATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGCCAGTTCCAACAGTTGTACTGAAGAAAAAGAAGTGTTAATAG  382

seq1  AGTGATGAATATGTGCACTATAATCTTTCCTATACCATTAGAGGACTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAATATGTGCACTATAATCTTTCCTATACCATTAGAGGACTCAA  432

seq1  TAAAATAAGGATATGCATATGGCATGAAAGAAGGTTGGAATTTTAAAATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGGATATGCATATGGCATGAAAGAAGGTTGGAATTTTAAAATA  482

seq1  AAAAATTTAGTCCTGAGAGAAAATTCCATAGTTTAACAGCTGGATAATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAGTCCTGAGAGAAAATTCCATAGTTTAACAGCTGGATAATGA  532

seq1  TTTCCTGTCTTCCATAAAAATCCACAAATGAATCTTTAAAATACTGCAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTCTTCCATAAAAATCCACAAATGAATCTTTAAAATACTGCAGT  582

seq1  TCTATAACGCTCTTAAAAGCTTATTGTTAGTTAAGGGTAATAGCACACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACGCTCTTAAAAGCTTATTGTTAGTTAAGGGTAATAGCACACAA  632

seq1  CAGGGATCAAACCTATATAATTGTTGAGATGAAGTCTTCCCCTAACATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCAAACCTATATAATTGTTGAGATGAAGTCTTCCCCTAACATAC  682

seq1  TAACTGAGCAAGAATAGTATCGTAAGCATTTAATATGTTATGTCTCTTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGCAAGAATAGTATCGTAAGCATTTAATATGTTATGTCTCTTGT  732

seq1  GGCATACATAAATCTATACCATAGGTTTAATATCTCGTGCTATAATATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACATAAATCTATACCATAGGTTTAATATCTCGTGCTATAATATTT  782

seq1  GTAGGACAATTTAGTGGGAAATAAGTTTAAAGGCAGTGAAGGATCAACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACAATTTAGTGGGAAATAAGTTTAAAGGCAGTGAAGGATCAACAG  832

seq1  GATACACAAGTACTCTTTTAAATCTGGATTCAAATAGCTGCAGTTCCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACAAGTACTCTTTTAAATCTGGATTCAAATAGCTGCAGTTCCTTT  882

seq1  CTTGCTTCTCAAGATAGTATGTGAGTACTATTTAAAGTTTTCTCTCTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTCAAGATAGTATGTGAGTACTATTTAAAGTTTTCTCTCTCTC  932

seq1  CTCTCTCCTTCAAGGTTTTAAATAGATTAAGTGGCACATTGCAAATACTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTTCAAGGTTTTAAATAGATTAAGTGGCACATTGCAAATACTA  982

seq1  AGCTCAGCTCATGAGATTCAGGAGAAATTGGGAAACAAATTATTTTTCCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTCATGAGATTCAGGAGAAATTGGGAAACAAATTATTTTTCCC  1032

seq1  TGCCACAGTCTAGCTTCCAGAGTATGTAAGTTAGTTTGTTTCATAGGCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGTCTAGCTTCCAGAGTATGTAAGTTAGTTTGTTTCATAGGCTC  1082

seq1  TCCTAAATCCCTATCAATAAATGGAAAGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  TCCTAAATCCCTATCAATAAATGGAAAGAATTC  1115