BAC Information

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BAC

Clone NameB6Ng01-051O05
Chromosome3 (Build37)
Map Location 157,813,340 - 157,890,387
singlet/doubletdoublet
Overlap geneLrrc7
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051O05.bB6Ng01-051O05.g
ACCDH875402DH875403
length848501
definitionDH875402|Mus musculus domesticus DNA, BAC clone: B6Ng01-051O05, 5' end.DH875403|Mus musculus domesticus DNA, BAC clone: B6Ng01-051O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,813,340 - 157,814,197)(157,889,881 - 157,890,387)
sequence
gaattcaacacagggttctttttcctgctcaagtcactcttgtttttata
tgtattcctcatatgcatttttgtaccttcccaggaatgaatagtcctat
tttgaatagtcactgagagctattaaaattggcacaattcttcttggcct
aatacaaaggcacagctccattctatcaaaaacttgacattatgacccag
gttctttgtaagtttataaattaatttgtctctttttaaaaattagagtt
aactgtcacattaattctttcatattacagggacaaagtgacagaaacat
acaggactattaaagagattctttttcactacacagtaaaatcggtggaa
ctttctgaaagcattttccttatttcaggaatgagctgtgactcgatttt
ctgaagtgaggcactaaagcctgaagaaacagaaaaatcacggaaacaac
ttattgatgtcgggtggtgagagaagatgactgaaaagtgaaatatttag
tgtgctcacattgtttatcaaaggataaatgctgtaaataaatttgtcat
ctagctgttaaaagttctccagaagataaagaaacacagtgcacggtccc
ttagctgctggattctgctagtttgcttattggaataacagagggaatgg
ccagtgtgatttagtgaaaagcaaacattttgataaggactatagcttaa
gaaactgactccaaatctgctatggctattgttagacttagtgtcaagga
ttctgagactaggatgatggtgtctagtgaaggagtatttctatctggtg
agcttcatgtggcatctgtgtgggattaatttgtacatgcattgtgta
ttaggcaaattaatggaactagaaaatatcatcctgagtgaggtaaccca
gtcacaaaagactggtttttagtggggaaaccaggaaaggagatacacat
ttgaaatgtaaataaagaaaacatctaataatttttaaaaaatcactgtg
gtaatatttgcactctttgaaattatatgcaatgtgccacatgcaaacaa
aaccttctaaacagtacacagtacacttctgggttaaatgtaagggctgt
gttatcttaaaggcactggttggtcttccagaaatcctgacttcaatccc
cagcaaccagatggagagagccaggactccagataaatatgtagcaaagg
atggcctccgctgacattaatgggaggagagggaggcttgatgtcccttc
ataggaggatgctagaagagtgaggcagaagtgggttaatgagtgaagga
gcaccctcacagaggcaaagggaaggagggagaagtagggtgggatggag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157813340_157814197
seq2: B6Ng01-051O05.b_44_891

seq1  GAATTCAACACAGGGTTCTTTTTCCTGCTCAAGTCACTCTTGTTTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAGGGTTCTTTTTCCTGCTCAAGTCACTCTTGTTTTTATA  50

seq1  TGTATTCCTCATATGCATTTTTGTACCTTCCCAGGAATGAATAGTCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCTCATATGCATTTTTGTACCTTCCCAGGAATGAATAGTCCTAT  100

seq1  TTTGAATAGTCACTGAGAGCTATTAAAATTGGCACAATTCTTCTTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAGTCACTGAGAGCTATTAAAATTGGCACAATTCTTCTTGGCCT  150

seq1  AATACAAAGGCACAGCTCCATTCTATCAAAAACTTGACATTATGACCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGGCACAGCTCCATTCTATCAAAAACTTGACATTATGACCCAG  200

seq1  GTTCTTTGTAAGTTTATAAATTAATTTGTCTCTTTTTAAAAATTAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGTAAGTTTATAAATTAATTTGTCTCTTTTTAAAAATTAGAGTT  250

seq1  AACTGTCACATTAATTCTTTCATATTACAGGGACAAAGTGACAGAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCACATTAATTCTTTCATATTACAGGGACAAAGTGACAGAAACAT  300

seq1  ACAGGACTATTAAAGAGATTCTTTTTCACTACACAGTAAAATCGGTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTATTAAAGAGATTCTTTTTCACTACACAGTAAAATCGGTGGAA  350

seq1  CTTTCTGAAAGCATTTTCCTTATTTCAGGAATGAGCTGTGACTCGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAAAGCATTTTCCTTATTTCAGGAATGAGCTGTGACTCGATTTT  400

seq1  CTGAAGTGAGGCACTAAAGCCTGAAGAAACAGAAAAATCACGGAAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGAGGCACTAAAGCCTGAAGAAACAGAAAAATCACGGAAACAAC  450

seq1  TTATTGATGTCGGGTGGTGAGAGAAGATGACTGAAAAGTGAAATATTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATGTCGGGTGGTGAGAGAAGATGACTGAAAAGTGAAATATTTAG  500

seq1  TGTGCTCACATTGTTTATCAAAGGATAAATGCTGTAAATAAATTTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCACATTGTTTATCAAAGGATAAATGCTGTAAATAAATTTGTCAT  550

seq1  CTAGCTGTTAAAAGTTCTCCAGAAGATAAAGAAACACAGTGCACGGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTTAAAAGTTCTCCAGAAGATAAAGAAACACAGTGCACGGTCCC  600

seq1  TTAGCTGCTGGATTCTGCTAGTTTGCTTATTGGAATAACAGAGGGAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCTGGATTCTGCTAGTTTGCTTATTGGAATAACAGAGGGAATGG  650

seq1  CCAGTGTGATTTAGTGAAAAAGCAAACATTTTGATAAGGACTATAGCTTA  700
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGTGTGATTTAGTG-AAAAGCAAACATTTTGATAAGGACTATAGCTTA  699

seq1  AGAAAACTGACTCCAAAATCTGCTATGGCTATTGTTAGACTTAGTGTCAA  750
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AG-AAACTGACTCC-AAATCTGCTATGGCTATTGTTAGACTTAGTGTCAA  747

seq1  GGATTCTGAGAACTAGGAATGATGGTGTCTAGTGAAAGAAGTAATTTCTA  800
      |||||||||| |||||| |||||||||||||||| ||| ||| |||||| 
seq2  GGATTCTGAG-ACTAGG-ATGATGGTGTCTAGTG-AAGGAGT-ATTTCT-  792

seq1  ATCTGGTTGAGCCTTCAATGT-GCATCTGTGTGAG-TATATTTGTACATG  848
      |||||| |||| |||| |||| ||||||||||| | |  |||||||||||
seq2  ATCTGG-TGAG-CTTC-ATGTGGCATCTGTGTGGGATTAATTTGTACATG  839

seq1  CATTTGTGTA  858
      || |||||||
seq2  CA-TTGTGTA  848

seq1: chr3_157889881_157890387
seq2: B6Ng01-051O05.g_69_575 (reverse)

seq1  TCTCCATCCCACCCTACTTCTCCCTCCTTCCCTTTGCCTCTGTGAGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCCCACCCTACTTCTCCCTCCTTCCCTTTGCCTCTGTGAGGGTG  50

seq1  CTCCTTCACTCATTAACCCACTTCTGCCTCACTCTTCTAGCATCCTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCACTCATTAACCCACTTCTGCCTCACTCTTCTAGCATCCTCCTA  100

seq1  TGAAGGGACATCAAGCCTCCCTCTCCTCCCATTAATGTCAGCGGAGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGACATCAAGCCTCCCTCTCCTCCCATTAATGTCAGCGGAGGCCA  150

seq1  TCCTTTGCTACATATTTATCTGGAGTCCTGGCTCTCTCCATCTGGTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCTACATATTTATCTGGAGTCCTGGCTCTCTCCATCTGGTTGCT  200

seq1  GGGGATTGAAGTCAGGATTTCTGGAAGACCAACCAGTGCCTTTAAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGAAGTCAGGATTTCTGGAAGACCAACCAGTGCCTTTAAGATAA  250

seq1  CACAGCCCTTACATTTAACCCAGAAGTGTACTGTGTACTGTTTAGAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCTTACATTTAACCCAGAAGTGTACTGTGTACTGTTTAGAAGGT  300

seq1  TTTGTTTGCATGTGGCACATTGCATATAATTTCAAAGAGTGCAAATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGCATGTGGCACATTGCATATAATTTCAAAGAGTGCAAATATTA  350

seq1  CCACAGTGATTTTTTAAAAATTATTAGATGTTTTCTTTATTTACATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGATTTTTTAAAAATTATTAGATGTTTTCTTTATTTACATTTCA  400

seq1  AATGTGTATCTCCTTTCCTGGTTTCCCCACTAAAAACCAGTCTTTTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTATCTCCTTTCCTGGTTTCCCCACTAAAAACCAGTCTTTTGTGA  450

seq1  CTGGGTTACCTCACTCAGGATGATATTTTCTAGTTCCATTAATTTGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTACCTCACTCAGGATGATATTTTCTAGTTCCATTAATTTGCCTA  500

seq1  AGAATTC  507
      |||||||
seq2  AGAATTC  507