BAC Information

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BAC

Clone NameB6Ng01-051P23
Chromosome3 (Build37)
Map Location 94,246,139 - 94,247,296
singlet/doubletsinglet
Overlap geneMrpl9
Upstream geneTchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3
Downstream geneLOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051P23.bB6Ng01-051P23.g
ACCDH875482DH875483
length1,1321,140
definitionDH875482|Mus musculus domesticus DNA, BAC clone: B6Ng01-051P23, 5' end.DH875483|Mus musculus domesticus DNA, BAC clone: B6Ng01-051P23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttagtgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgttttttc
ttgaggcactcatagctatggagtttccctctttagaaatgcttttcatg
tgttcccaaaagtttgggttcggtgtggccttcattttcataaaactcca
aaaaatctttaattccttcttattcctcctgaccaggttcattgagaaag
aagggtggtctgttcctgtgaaggtgggcttc
gaattctcatcagctgtaacaggaacacctgcaggtagggcagtttataa
agaatggggcatacattacgttttaaatgtctgttagacatataagatga
tgatgaataagaagttgggtattccaatgtgaagtttgtgggagcctagg
ataagaatttggacatcactggcatataaatagcggttagccataaggtg
aactgagagcatcaagacactggatactaaaaagaatgaaattccacata
ctgagtgctgggtgcaaacaattaaaagactgttgaagacttgtcctgaa
taccaaggaaatgcgtgtaggtcagtctatgtaagtgcacataaaatgga
gtgtagcacatctttccacactcctttatagaccctcattttataaccat
ctattaagcacaaagactccacagaaggacctgcttgtgcctaacagtag
tttctttttctctacagtttgtctcctgcaactctttaaatattagctta
aatacaatagtaacaatatcatggaaagttgcagagtttttagaggatcc
catccttcgactacttttagaaagattcaagggaaaattgagagtgacat
ccatattttagtgttcagaaattatagcatgtcaaaattagaagtgatcc
cagtacctagaactaaaccaaaccacttatattgttatcattggttttta
tggataaaaatcctcctcctcaccagttaattattattattggtctcgct
atgtagccctggctggcctagagcttgagatgtaaaccagattagcttga
acttgtcctgcaggaagattacagggtgcgccaagccccctccgcctctt
tttttaaaagtgaagccaaaaaaaaaaaaaagaaaaagtacgttttccac
tgtcggtcacgcaaagctctgtggaaagtgtgacaaaaaaaaaaaaagca
gttctctcgctgttctatcgtcgcgtgcaaggcggggttgcggcactctt
cccactctcatgcccaggtctcagcgcagctattatctataccactcagg
ccgccgcgggcagtccaaaggcgcagcttgccaatgccggggtctacttc
cgcgttccgctccgcttcatggcgccctggggctcccggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94246139_94247296
seq2: B6Ng01-051P23.g_65_1204

seq1  GAATTCTCATCAGCTGTAACAGGAACACCTGCAGGTAGGGCAGTTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCAGCTGTAACAGGAACACCTGCAGGTAGGGCAGTTTATAA  50

seq1  AGAATGGGGCATACATTACGTTTTAAATGTCTGTTAGACATATAAGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGGCATACATTACGTTTTAAATGTCTGTTAGACATATAAGATGA  100

seq1  TGATGAATAAGAAGTTGGGTATTCCAATGTGAAGTTTGTGGGAGCCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATAAGAAGTTGGGTATTCCAATGTGAAGTTTGTGGGAGCCTAGG  150

seq1  ATAAGAATTTGGACATCACTGGCATATAAATAGCGGTTAGCCATAAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATTTGGACATCACTGGCATATAAATAGCGGTTAGCCATAAGGTG  200

seq1  AACTGAGAGCATCAAGACACTGGATACTAAAAAGAATGAAATTCCACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAGCATCAAGACACTGGATACTAAAAAGAATGAAATTCCACATA  250

seq1  CTGAGTGCTGGGTGCAAACAATTAAAAGACTGTTGAAGACTTGTCCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTGGGTGCAAACAATTAAAAGACTGTTGAAGACTTGTCCTGAA  300

seq1  TACCAAGGAAATGCGTGTAGGTCAGTCTATGTAAGTGCACATAAAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGGAAATGCGTGTAGGTCAGTCTATGTAAGTGCACATAAAATGGA  350

seq1  GTGTAGCACATCTTTCCACACTCCTTTATAGACCCTCATTTTATAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCACATCTTTCCACACTCCTTTATAGACCCTCATTTTATAACCAT  400

seq1  CTATTAAGCACAAAGACTCCACAGAAGGACCTGCTTGTGCCTAACAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAGCACAAAGACTCCACAGAAGGACCTGCTTGTGCCTAACAGTAG  450

seq1  TTTCTTTTTCTCTACAGTTTGTCTCCTGCAACTCTTTAAATATTAGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTCTACAGTTTGTCTCCTGCAACTCTTTAAATATTAGCTTA  500

seq1  AATACAATAGTAACAATATCATGGAAAGTTGCAGAGTTTTTAGAGGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATAGTAACAATATCATGGAAAGTTGCAGAGTTTTTAGAGGATCC  550

seq1  CATCCTTCGACTACTTTTAGAAAGATTCAAGGGAAAATTGAGAGTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCGACTACTTTTAGAAAGATTCAAGGGAAAATTGAGAGTGACAT  600

seq1  CCATATTTTAGTGTTCAGAAATTATAGCATGTCAAAATTAGAAGTGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTAGTGTTCAGAAATTATAGCATGTCAAAATTAGAAGTGATCC  650

seq1  CAGTACCTAGAACTAAACCAAACCACTTATATTGTTATCATTGGTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTAGAACTAAACCAAACCACTTATATTGTTATCATTGGTTTTTA  700

seq1  TGGATAAAAATCCTCCTCCTCACCAGTTAATTATTATTATTGGTCTCGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAAATCCTCCTCCTCACCAGTTAATTATTATTATTGGTCTCGCT  750

seq1  ATGTAGCCCTGGCTGGCCTAGAGCTTGAGATGTAAACCAGATTAGCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCTGGCTGGCCTAGAGCTTGAGATGTAAACCAGATTAGCTTGA  800

seq1  ACTTGTCCTGCAGGAAGATTACAGGGTGCGCCAAGCCCCCTCCGCCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCCTGCAGGAAGATTACAGGGTGCGCCAAGCCCCCTCCGCCTCTT  850

seq1  TTTTTAAAAGTGAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAGTACGTT  900
      |||||||||||||||||      |||||||||||||| ||||||||||||
seq2  TTTTTAAAAGTGAAGCC------AAAAAAAAAAAAAAGAAAAAGTACGTT  894

seq1  TTCCACTGTCGGTCCACGCAAAGCTCTGTGGAAAGTGGTGACAAAAAAAA  950
      ||||||||||||| |||||||||||||||||||||| ||||| |||||||
seq2  TTCCACTGTCGGT-CACGCAAAGCTCTGTGGAAAGT-GTGAC-AAAAAAA  941

seq1  AAAAAAGCAGTTCTCTCCGCTGTCCTATCGTCGGCGTGCAAGGCGGGGTT  1000
      |||||||||||||||| |||||| |||||||| |||||||||||||||||
seq2  AAAAAAGCAGTTCTCT-CGCTGTTCTATCGTC-GCGTGCAAGGCGGGGTT  989

seq1  GCGGCAACTC-TCCCACTCCCCATGCCCAGGTCTCAGCGCAGCCTATATC  1049
      ||||| |||| ||||||| | ||||||||||||||||||||||   ||||
seq2  GCGGC-ACTCTTCCCACT-CTCATGCCCAGGTCTCAGCGCAGCTATTATC  1037

seq1  TATACCACTCAGGCGCGCCGCGGGCAGCCCAGAGGCGCAGC-TGCGCATG  1098
      |||||||||||||| |||||||||||| ||| ||||||||| |||  |||
seq2  TATACCACTCAGGC-CGCCGCGGGCAGTCCAAAGGCGCAGCTTGCCAATG  1086

seq1  CGCGGGGTCCTTCTTCCGCCTGTCCGCTCCGCTGTCATGGCGGCCTCTGT  1148
      | |||||| || ||||||| | ||||||||||| ||||||||  | ||| 
seq2  C-CGGGGT-CTACTTCCGCGT-TCCGCTCCGCT-TCATGGCG--CCCTGG  1130

seq1  GGCTCCCGGG  1158
      ||||||||||
seq2  GGCTCCCGGG  1140