BAC Information

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BAC

Clone NameB6Ng01-052B12
Chromosome3 (Build37)
Map Location 88,916,665 - 89,007,081
singlet/doubletdoublet
Overlap geneLOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba
Upstream geneIqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps
Downstream geneMtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052B12.bB6Ng01-052B12.g
ACCDH875552DH875553
length940552
definitionDH875552|Mus musculus domesticus DNA, BAC clone: B6Ng01-052B12, 5' end.DH875553|Mus musculus domesticus DNA, BAC clone: B6Ng01-052B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,916,665 - 88,917,603)(89,006,524 - 89,007,081)
sequence
gaattctctaggtaggctaggtgggccttgaactcagagataaacccagt
tttgcctcttaagttctggaactaaaggggtatgccactatgtccagact
tcctctgttttaactcaggagacagagacaggcagatctctgagtttgag
ggtagtcttgtggaggtctatagagtacaatctaggacaaccagggttac
aatgagaaatcttgtcttaaaaaacctaaataaacaaatggtctctattt
cttatttttctctttcttttcttcaaaaggaacacccagataaagagata
cactgaacaaggtttaaaaaggtaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaagtcctgagtacaaaatagttctgtgctcacggagctgggcaggtcac
cttcctacccgtcggatagtctggaagtactgtcagggctctttatcgcc
atttcatcatggatacatgataaattattaactggaagtttcaagtggcc
agtcatcctatgatcttgtgaccagctgctattaggagccaccaagagtt
gactgattaaaggccaatcagagccaacacagcctttactcccagcagag
gatggcagagccctgattttgcagccagcctggtctccatatagggagtt
tcaggacagccagagctacaaaaggaaaccctgtcttgctgggggaaatt
tgtcaatcagcattcctgaaaagcagctgattaaaacacccctgcctcgt
gctgagctgtctcagtgtgggaaagcaccagttgctttcctgtggaagct
cacaccagggactccatcaccatcttctgactatgttcaggcagcagaca
cacacatacagggcaaaaacctgtattttaggtaaacataaaataaaaaa
tcttttttaaaatgtcaatagcaagccagggcaatggtgg
cataatctagataggcagaattcccgaagcaagattgacaaggcaaattg
tagccctgcccgcttacctctccagaagatcttggaaactggagctactc
aggaccagcgaatgagaagactgtggaagtttctgtgccttggagggata
gaagacctaccaaataaaacacagacagatatcatagctcttggaaccga
ctagcacagcaagttccttccggcttaaaggggcggacagagtcacatga
tgactaagccggtcacgtgatgcaggaagtgaagcaatcgaagccatatt
tgtaatgggcagttgggctcttctaggttagtcattcattgcataccctg
tgaattttggggaggcctaaaggatgacacctttaggaagagaattctaa
caaggattgtatggacagctgagtagaggctcctaaatccaagacagaga
ggacttctagcctgtgagggccactgtattcacatgcacataccgacaca
cagatatacataatttaaaaataaaatttaaaaataaaaacaaggggctg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88916665_88917603
seq2: B6Ng01-052B12.b_44_983

seq1  GAATTCTCTAGGTAGGCTAGGTGGGCCTTGAACTCAGAGATAAACCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGTAGGCTAGGTGGGCCTTGAACTCAGAGATAAACCCAGT  50

seq1  TTTGCCTCTTAAGTTCTGGAACTAAAGGGGTATGCCACTATGTCCAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTTAAGTTCTGGAACTAAAGGGGTATGCCACTATGTCCAGACT  100

seq1  TCCTCTGTTTTAACTCAGGAGACAGAGACAGGCAGATCTCTGAGTTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTTTAACTCAGGAGACAGAGACAGGCAGATCTCTGAGTTTGAG  150

seq1  GGTAGTCTTGTGGAGGTCTATAGAGTACAATCTAGGACAACCAGGGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCTTGTGGAGGTCTATAGAGTACAATCTAGGACAACCAGGGTTAC  200

seq1  AATGAGAAATCTTGTCTTAAAAAACCTAAATAAACAAATGGTCTCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAATCTTGTCTTAAAAAACCTAAATAAACAAATGGTCTCTATTT  250

seq1  CTTATTTTTCTCTTTCTTTTCTTCAAAAGGAACACCCAGATAAAGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTCTCTTTCTTTTCTTCAAAAGGAACACCCAGATAAAGAGATA  300

seq1  CACTGAACAAGGTTTAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACAAGGTTTAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAA  350

seq1  AAAGTCCTGAGTACAAAATAGTTCTGTGCTCACGGAGCTGGGCAGGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTGAGTACAAAATAGTTCTGTGCTCACGGAGCTGGGCAGGTCAC  400

seq1  CTTCCTACCCGTCGGATAGTCTGGAAGTACTGTCAGGGCTCTTTATCGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACCCGTCGGATAGTCTGGAAGTACTGTCAGGGCTCTTTATCGCC  450

seq1  ATTTCATCATGGATACATGATAAATTATTAACTGGAAGTTTCAAGTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCATGGATACATGATAAATTATTAACTGGAAGTTTCAAGTGGCC  500

seq1  AGTCATCCTATGATCTTGTGACCAGCTGCTATTAGGAGCCACCAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCTATGATCTTGTGACCAGCTGCTATTAGGAGCCACCAAGAGTT  550

seq1  GACTGATTAAAGGCCAATCAGAGCCAACACAGCCTTTACTCCCAGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTAAAGGCCAATCAGAGCCAACACAGCCTTTACTCCCAGCAGAG  600

seq1  GATGGCAGAGCCCTGATTTTGCAGCCAGCCTGGTCTCCATATAGGGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGAGCCCTGATTTTGCAGCCAGCCTGGTCTCCATATAGGGAGTT  650

seq1  TCAGGACAGCCAGAGCTACAAAAGGAAACCCTGTCTTGCTGGGGGAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACAGCCAGAGCTACAAAAGGAAACCCTGTCTTGCTGGGGGAAATT  700

seq1  TGTCAATCAGCATTCCTGAAAAGCAGCTGATTAAAACACCCCTGCCTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCAGCATTCCTGAAAAGCAGCTGATTAAAACACCCCTGCCTCGT  750

seq1  GCTGAGCTGTCTCAGTGTGGGAAAGCACCAGTTGCTTTCCTGTGGAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTGTCTCAGTGTGGGAAAGCACCAGTTGCTTTCCTGTGGAAGCT  800

seq1  CACACCAGGGACTCCATCACCATCTTCTGACTATGTTCAGGCAGCAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGGGACTCCATCACCATCTTCTGACTATGTTCAGGCAGCAGACA  850

seq1  CACACATACA-GGCAAAAACCTGTATTTTAGGTAAACATAAAATAAAAAA  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACACATACAGGGCAAAAACCTGTATTTTAGGTAAACATAAAATAAAAAA  900

seq1  TCTTTTTTAAAAATGTCAATAGCAAGCCA-GGCAATGGTGG  939
      |||||||| |||||||||||||||||||| |||||||||||
seq2  TCTTTTTT-AAAATGTCAATAGCAAGCCAGGGCAATGGTGG  940

seq1: chr3_89006524_89007081
seq2: B6Ng01-052B12.g_66_623 (reverse)

seq1  TCCAGCCCCTTGTTTTTATTTTTAAATTTTATTTTTAAATTATGTATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCTTGTTTTTATTTTTAAATTTTATTTTTAAATTATGTATATC  50

seq1  TGTGTGTCGGTATGTGCATGTGAATACAGTGGCCCTCACAGGCTAGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCGGTATGTGCATGTGAATACAGTGGCCCTCACAGGCTAGAAGT  100

seq1  CCTCTCTGTCTTGGATTTAGGAGCCTCTACTCAGCTGTCCATACAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGTCTTGGATTTAGGAGCCTCTACTCAGCTGTCCATACAATCCT  150

seq1  TGTTAGAATTCTCTTCCTAAAGGTGTCATCCTTTAGGCCTCCCCAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAATTCTCTTCCTAAAGGTGTCATCCTTTAGGCCTCCCCAAAATT  200

seq1  CACAGGGTATGCAATGAATGACTAACCTAGAAGAGCCCAACTGCCCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTATGCAATGAATGACTAACCTAGAAGAGCCCAACTGCCCATTA  250

seq1  CAAATATGGCTTCGATTGCTTCACTTCCTGCATCACGTGACCGGCTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGGCTTCGATTGCTTCACTTCCTGCATCACGTGACCGGCTTAGT  300

seq1  CATCATGTGACTCTGTCCGCCCCTTTAAGCCGGAAGGAACTTGCTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTGACTCTGTCCGCCCCTTTAAGCCGGAAGGAACTTGCTGTGCT  350

seq1  AGTCGGTTCCAAGAGCTATGATATCTGTCTGTGTTTTATTTGGTAGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTTCCAAGAGCTATGATATCTGTCTGTGTTTTATTTGGTAGGTCT  400

seq1  TCTATCCCTCCAAGGCACAGAAACTTCCACAGTCTTCTCATTCGCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCTCCAAGGCACAGAAACTTCCACAGTCTTCTCATTCGCTGGTC  450

seq1  CTGAGTAGCTCCAGTTTCCAAGATCTTCTGGAGAGGTAAGCGGGCAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGCTCCAGTTTCCAAGATCTTCTGGAGAGGTAAGCGGGCAGGGC  500

seq1  TACAATTTGCCTTGTCAATCTTGCTTCGGGAATTCTGCCTATCTAGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTGCCTTGTCAATCTTGCTTCGGGAATTCTGCCTATCTAGATTA  550

seq1  TGGAATTC  558
      ||||||||
seq2  TGGAATTC  558