BAC Information

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BAC

Clone NameB6Ng01-052F19
Chromosome3 (Build37)14 (Build37)
Map Location 41,059,224 - 41,059,73793,488,447 - 93,489,383
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052F19.bB6Ng01-052F19.g
ACCDH875741DH875742
length983930
definitionDH875741|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F19, 5' end.DH875742|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(93,488,447 - 93,489,383)
sequence
gaattctttgtttaactctgagccccattttttaatggggttatttgatt
ttctggactccaccttcttcagttctttatatatattggctattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctattcaggaattttccccctatgcccatatcttcgagggtttttcctac
tttctcctcaataagttttagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaggagataggaatggatcaatttgca
ttcttctacatgaaacctgccagttgtgccagcaccatttgttgaagatg
atgtcttttttccactggatggttttatctcctttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtaactattccagtaccatgcagtttttatcacaattgct
ctgtagtacagctttaggtcaggcatggtgattccaacagaggttctttt
atccttgagaagagtttttgctatcctaggtttttttgttattccagact
aatttgctgattgcccttactaatacgttgaagaaatgaattggaatttt
gcattgaatctgtagattgctttcagcaagatgaccatttttactatatt
gatcctgccaatccatgagcatggaagatctttccatcttctgagatctt
ctatagtttctttcttcagagactttaagttcttatcctacagacctttc
acttccttagttagagtcttgccaagatattttatattatttgtgactat
tgagaaggtgtgttccctaatttctttctcagc
gaattcctgagaattcctctgggagtttgggctatgtactgaagacacct
gtgttggctaactattgtaactaagtaaagcttaggcacagggtttccca
cagaaaccagcccatgtttttcatgatttttacgacagatggcttcttgg
tcttagagaaaaccatgtttggtggaagaaaatttatatcttaaagagtc
agagaaaagatttttcagatgcaccttttcaaaactaactgaactgagag
ttgagaggccaaaggtctagctaggtaaggcacaaccatgggaaaggcat
ggacaagttggggaaggtccttcttgggtgatggaatgggcctgtgattc
atggatgctaggtgtgtgcatcaccactgaatgtcactcccgtcctcctc
cataaataatatatttgccaatagtaacttagcagtatttcctaacttga
acgtttcaaggtacttttatatttgttacttgtactttccctggagtaag
tcctacctgcctgtgattgagctaactaaagagcagcctccattgcttct
ggggaatgttcatttataacacttgaataagtaaatatcttctctagtag
attcaaaaactccagactgttctgtcaaacacttcaatactagtctttca
atggcaggtattatttgctagaagtcggccaggccaattttaccatacac
tgtgctcttggtttagctcgatgactcatggctatctctaagtccagtta
tactttatatgcatggactaataaattatgacttaaaagggtactacgtt
tttccacataattaactattctataatgagggaagatggtgaagaattac
ttcaaactgaatagtgagaaattaacaggtgtgcaatagtgtgtgggact
cttaaaaattaagaatagtaaaacgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-052F19.b_47_560 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| ||||| |||| ||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAAGGAGATAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||||||||||| ||| |||||||||||||||||||||||||||  | 
seq2  GTGGAAAAAAGACATCATCTTCAACAAATGGTGCTGGCACAACTGGCAGG  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      | |||||||||||||||| |||||||||| |||||||||| |||||||||
seq2  TTTCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCC-TGTACTAAG  149

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||| ||||||| ||||||||||||||||||||| ||
seq2  GTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTAAA  199

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||| ||||||||||| || |||| ||| |||||||||| || |||||
seq2  ACTTATTGAGGAGAAAGTAGGAAAAACCCTCGAAGATATGGGCATAGGGG  249

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
       |||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  GAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATT  299

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAAGCAAAAGACAC  349

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCT  399

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      |||||||||||||||||||||||||| ||||||||||| ||||||| |||
seq2  ATCCTAAATCAGATAGGGGACTAATAGCCAATATATATAAAGAACTGAAG  449

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGAGTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499

seq1  GCTAAACAAAGAATT  514
      | |||||||||||||
seq2  GTTAAACAAAGAATT  514

seq1: chr14_93488447_93489383
seq2: B6Ng01-052F19.g_69_998 (reverse)

seq1  CCTCCCGTTTTACTATTCTTTATTTTTTATGAGTCCCACACACTCTTGCA  50
      |||||||||||||||||| ||| |||||| |||||||||||||| |||||
seq2  CCTCCCGTTTTACTATTC-TTAATTTTTAAGAGTCCCACACACTATTGCA  49

seq1  CACCTGTTAATTTCTCACTATTCAGGTTTTGAAGTTATTCTTCACCATCT  100
      |||||||||||||||||||||||||  |||||||| ||||||||||||||
seq2  CACCTGTTAATTTCTCACTATTCAG--TTTGAAGTAATTCTTCACCATCT  97

seq1  T-CCTCATTATAGAAATAGTTAAAATTATGTGGAAAAACGTAGTATCCCT  149
      | ||||||||||| |||||||  |||||||||||||||||||||| ||||
seq2  TCCCTCATTATAG-AATAGTT--AATTATGTGGAAAAACGTAGTA-CCCT  143

seq1  TTTAAGTCATAATTTATTAGTCCATGCATATAAAGTATAACTGGACTTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCATAATTTATTAGTCCATGCATATAAAGTATAACTGGACTTAG  193

seq1  AGATAGCCATGAGTCATCGAGCTAAACCAAGAAGCACAGTGTATGGTAAA  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGATAGCCATGAGTCATCGAGCTAAACCAAG-AGCACAGTGTATGGTAAA  242

seq1  ATTGGCCTGGCCGACTTCTAGCAAATAATACCTGCCATTGAAAGACTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCTGGCCGACTTCTAGCAAATAATACCTGCCATTGAAAGACTAGT  292

seq1  ATTGAAGTGTTTGACAGAACAGTCTGGAGTTTTTGAATCTACTAGAGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTGTTTGACAGAACAGTCTGGAGTTTTTGAATCTACTAGAGAAG  342

seq1  ATATTTACTTATTCAAGTGTTATAAATGAACATTCCCCAGAAGCAATGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTTATTCAAGTGTTATAAATGAACATTCCCCAGAAGCAATGGA  392

seq1  GGCTGCTCTTTAGTTAGCTCAATCACAGGCAGGTAGGACTTACTCCAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCTTTAGTTAGCTCAATCACAGGCAGGTAGGACTTACTCCAGGG  442

seq1  AAAGTACAAGTAACAAATATAAAAGTACCTTGAAACGTTCAAGTTAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAAGTAACAAATATAAAAGTACCTTGAAACGTTCAAGTTAGGAA  492

seq1  ATACTGCTAAGTTACTATTGGCAAATATATTATTTATGGAGGAGGACGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTAAGTTACTATTGGCAAATATATTATTTATGGAGGAGGACGGG  542

seq1  AGTGACATTCAGTGGTGATGCACACACCTAGCATCCATGAATCACAGGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATTCAGTGGTGATGCACACACCTAGCATCCATGAATCACAGGCC  592

seq1  CATTCCATCACCCAAGAAGGACCTTCCCCAACTTGTCCATGCCTTTCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATCACCCAAGAAGGACCTTCCCCAACTTGTCCATGCCTTTCCCA  642

seq1  TGGTTGTGCCTTACCTAGCTAGACCTTTGGCCTCTCAACTCTCAGTTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGCCTTACCTAGCTAGACCTTTGGCCTCTCAACTCTCAGTTCAG  692

seq1  TTAGTTTTGAAAAGGTGCATCTGAAAAATCTTTTCTCTGACTCTTTAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTGAAAAGGTGCATCTGAAAAATCTTTTCTCTGACTCTTTAAGA  742

seq1  TATAAATTTTCTTCCACCAAACATGGTTTTCTCTAAGACCAAGAAGCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTTTCTTCCACCAAACATGGTTTTCTCTAAGACCAAGAAGCCAT  792

seq1  CTGTCGTAAAAATCATGAAAAACATGGGCTGGTTTCTGTGGGAAACCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGTAAAAATCATGAAAAACATGGGCTGGTTTCTGTGGGAAACCCTG  842

seq1  TGCCTAAGCTTTACTTAGTTACAATAGTTAGCCAACACAGGTGTCTTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAGCTTTACTTAGTTACAATAGTTAGCCAACACAGGTGTCTTCAG  892

seq1  TACATAGCCCAAACTCCCAGAGGAATTCTCAGGAATTC  937
      ||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCCCAAACTCCCAGAGGAATTCTCAGGAATTC  930