BAC Information

Click to search

BAC

Clone NameB6Ng01-052K01
Chromosome3 (Build37)
Map Location 47,155,702 - 47,156,813
singlet/doubletsinglet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849, LOC383850
Downstream geneLOC100039426, LOC666202, LOC666208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052K01.bB6Ng01-052K01.g
ACCDH875922DH875923
length1,2601,106
definitionDH875922|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K01, 5' end.DH875923|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcagcagcagctcaatccactcatacataccccatgaatatac
ccacagtctagttcagtagtgtcaggagagcaaacatgtatcaactatgg
tgaaatcatctagcagaaacagccaggtctctgctgaatcagcaggagag
agcagaagcaaccaagcacaccaggaatattaggagaaattcttggctct
gcttctctcagtgaagtgaagagcagcaaagaaggaagaacaagaagcac
tgcaaagctagctatgcaaggaagccccattcacactgtttatactgttt
atactcactcctagtcctccaaatatcttgcctcaccacatgtctcgact
cagcatgtgagtctgtcttagcaaaactctatatgagtctgtatcagctg
atatcattctgccaattggcccaagtccactgaagcagcaaggtgccatc
acaacaccaccagaagtctattggtgcatttctctgtggagtcgtcacaa
ttggaactcatctacacagtgtaaggcagatcaatgcatgtgtgtccttt
aatgaagaatcgttcgtcatatgtcccttcatgtgtctgccttaaggaaa
catcctttcacctatgtgaaatccttcaggaaaatactcattcatgggtt
ctcccatcaaaataccatctggcacaactgtaggaagccaccctcacatt
cgccgttgcaagatggcactgacatcctgtgttctctgccttccctgtga
tgccaactcggccgatgggctgcagccaatcagggagtgacacgtcctag
gcggaggataattctccttaaaagggacggggtttcaccattctctctct
tgctgtctggctcctaaagatgtaagcaatagagctctgctctctttgcg
ctcttgctctcttgcactcttgctctcttgctctctggctcctgaagatg
taagcaataaagcttttgccgcagaagatcccggtttgttgcgtctttcc
tggccagtcgcgagaacgcctgtagacacactagctttccaaagaaacct
taagctccatttcagcaattagataatttaatgtggatattttcaatcca
catatcattagtttatgtgggaaaatgcttttgaaccaaggtgaaattgg
tgctaaggaaccatgtatatcatggtaaatggtgtgccattccaattgca
tgcaatcgtccacatttccaggttcgcggtggagaagcttagtggttgac
catcacaaag
gaattcctagaattcatttataatcttttgcctcacgtttttcttaggtg
cctattttgaggaaaggagccagtgaactctgttagtctagaatcatctt
cagtagaagaaaataaagaggtctgtataacataaggcaggaatatcaat
tacttagtttaaaaaacgaagagagtttgtcatgtgtacatctcagcagg
atatacaagttctttactcataagaaaaatttcacttcaactttgtagaa
ttatctcactattaatttgcttactaaaacataatttctacaaatccacc
tgtacctgtaaatattataaccatgcatttcaaatatgaaattaataaga
tatatttgaaccataaaaactgagaagagtgggaatgatgaaatcagtaa
atcactaaagtgctggatgtttaagatgaggcccagaacccttgtaaaat
aacattcaggatgatgcctgctggaactgtcatgtctagaagatggagac
aggaggtggtccttagctccttgggcagtcaggatagaccaactgggaat
cctcacaacccactgagaggtctttactcaaagaacacaaaattgtgggt
ggatattttgaacaacatccaaatttgtccgatagttttcatatacacac
atgcttgcatgtacaaccataggcatatatacatataccaaagtttaaaa
tgaaaacatggaagagtagaaaaattgctggatattttggagttcttgat
acccttgcagaagacctgggttcagttcttggaatccacatggcaactaa
caaccatgttcaaatccagttccccaggctcgaatgcccagttcatgcag
ccatgagaaccacacatgcacatggtgcccatagtacatggagtcaaaat
actaatacacataaaagacaccaaatttattctttattaaaaacagaaaa
ggaagataaataaaaatattttctatttttacatagtatatttatgttgt
taattaaaagctattagtgcattaaaaattattttcttgtcacctaaaat
tttgtcaggaattattagtgtataatcgactaactaattaccattggctt
attggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47155702_47156813
seq2: B6Ng01-052K01.g_67_1172 (reverse)

seq1  ACCAATAAGCAAATAGGTAAAATTAGTTTTGTTGATTTATACACTAAATA  50
      |||||||||| ||| |||  |||||| || || || ||||||||| ||||
seq2  ACCAATAAGCCAAT-GGT--AATTAG-TTAGTCGA-TTATACACT-AATA  44

seq1  ATTCCTGACAATATTTTAGGTGACCAGGAAATAATCTTTAATGCACTAAT  100
      ||||||||||| |||||||||||| || ||||||| ||||||||||||||
seq2  ATTCCTGACAAAATTTTAGGTGACAAGAAAATAATTTTTAATGCACTAAT  94

seq1  AGCTTTTTAATTAAC-ACATAAATATACTATGTAAAAATAGAAAATATTT  149
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGC-TTTTAATTAACAACATAAATATACTATGTAAAAATAGAAAATATTT  143

seq1  TTATTTAATCTTCCTTTTTCTGTTTTT-ATAAAG-ATTAATTTGGTGTCT  197
      |||||| ||||||| |||||||||||| |||||| || ||||||||||||
seq2  TTATTT-ATCTTCC-TTTTCTGTTTTTAATAAAGAATAAATTTGGTGTCT  191

seq1  TTTATGTGTATTAGTATTTTGACTCCATGTACTATGGGCACCATGTGCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTATTAGTATTTTGACTCCATGTACTATGGGCACCATGTGCAT  241

seq1  GTGTGGTTCTCATGGCTGCATGAACTGGGCATTCGAGCCTGGGGAACTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTCTCATGGCTGCATGAACTGGGCATTCGAGCCTGGGGAACTGG  291

seq1  ATTTGAACATGGTTGTTAGTTGCCATGTGGATTCCAAGAACTGAACCCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACATGGTTGTTAGTTGCCATGTGGATTCCAAGAACTGAACCCAG  341

seq1  GTCTTCTGCAAGGGTATCAAGAACTCCAAAATATCCAGCAATTTTTCTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGCAAGGGTATCAAGAACTCCAAAATATCCAGCAATTTTTCTAC  391

seq1  TCTTCCATGTTTTCATTTTAAACTTTGGTATATGTATATATGCCTATGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATGTTTTCATTTTAAACTTTGGTATATGTATATATGCCTATGGT  441

seq1  TGTACATGCAAGCATGTGTGTATATGAAAACTATCGGACAAATTTGGATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGCAAGCATGTGTGTATATGAAAACTATCGGACAAATTTGGATG  491

seq1  TTGTTCAAAATATCCACCCACAATTTTGTGTTCTTTGAGTAAAGACCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAAAATATCCACCCACAATTTTGTGTTCTTTGAGTAAAGACCTCT  541

seq1  CAGTGGGTTGTGAGGATTCCCAGTTGGTCTATCCTGACTGCCCAAGGAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTTGTGAGGATTCCCAGTTGGTCTATCCTGACTGCCCAAGGAGC  591

seq1  TAAGGACCACCTCCTGTCTCCATCTTCTAGACATGACAGTTCCAGCAGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCACCTCCTGTCTCCATCTTCTAGACATGACAGTTCCAGCAGGC  641

seq1  ATCATCCTGAATGTTATTTTACAAGGGTTCTGGGCCTCATCTTAAACATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTGAATGTTATTTTACAAGGGTTCTGGGCCTCATCTTAAACATC  691

seq1  CAGCACTTTAGTGATTTACTGATTTCATCATTCCCACTCTTCTCAGTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTTAGTGATTTACTGATTTCATCATTCCCACTCTTCTCAGTTTT  741

seq1  TATGGTTCAAATATATCTTATTAATTTCATATTTGAAATGCATGGTTATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCAAATATATCTTATTAATTTCATATTTGAAATGCATGGTTATA  791

seq1  ATATTTACAGGTACAGGTGGATTTGTAGAAATTATGTTTTAGTAAGCAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACAGGTACAGGTGGATTTGTAGAAATTATGTTTTAGTAAGCAAA  841

seq1  TTAATAGTGAGATAATTCTACAAAGTTGAAGTGAAATTTTTCTTATGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTGAGATAATTCTACAAAGTTGAAGTGAAATTTTTCTTATGAGT  891

seq1  AAAGAACTTGTATATCCTGCTGAGATGTACACATGACAAACTCTCTTCGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTTGTATATCCTGCTGAGATGTACACATGACAAACTCTCTTCGT  941

seq1  TTTTTAAACTAAGTAATTGATATTCCTGCCTTATGTTATACAGACCTCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACTAAGTAATTGATATTCCTGCCTTATGTTATACAGACCTCTT  991

seq1  TATTTTCTTCTACTGAAGATGATTCTAGACTAACAGAGTTCACTGGCTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTCTACTGAAGATGATTCTAGACTAACAGAGTTCACTGGCTCC  1041

seq1  TTTCCTCAAAATAGGCACCTAAGAAAAACGTGAGGCAAAAGATTATAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAAAATAGGCACCTAAGAAAAACGTGAGGCAAAAGATTATAAAT  1091

seq1  GAATTCTAGGAATTC  1112
      |||||||||||||||
seq2  GAATTCTAGGAATTC  1106