BAC Information

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BAC

Clone NameB6Ng01-052K12
Chromosome3 (Build37)
Map Location 110,451,220 - 110,572,332
singlet/doubletdoublet
Overlap genenone
Upstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052K12.bB6Ng01-052K12.g
ACCDH875943DH875944
length1,1001,086
definitionDH875943|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K12, 5' end.DH875944|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,571,233 - 110,572,332)(110,451,220 - 110,452,313)
sequence
gaattctctgtttagatctgtaccacattttatatttgattatttgggga
ttttatatctatcttcttgagttctttttatagattggattctagtcctc
tatgggatgtgaggctggtgaaatctttttccattcggtaggctgccact
ttgtttaaaagacatggcctttggcttacagaagctcgagaggtctcatt
tgttaattaaaaagaaagctttgagactgggagtggtgaggtaagccttc
aattccagtcctacagagagagagagagagagagagagagagagagagag
agagagaggactctgtctgagtacaaggccagtaaggtctataaaataat
ttacagtacagccagagctacctaatagatacagatatcctgtcacaaat
tacaaaataaaacaaaaaatagaaagaaaaagagaaaaaccacaaataag
gcacatttggatgtaaattaaatgtagattataacgtgtgtctaaagtac
aaacttctttcatgtctttccttataatattaagactaaagtatgcatca
taacagatttcattacaaatgaacatttctgtgattgtaaaaatataaac
gtaacaaaaatctatttctgtggattagaagcctaacttgtctagtctct
agggccagttttttattgagtgggaataaaaacaattaaacaaaaacaaa
acaaacaacaacaaaaaaagaggcaggaagagaggaagatgatgagaaag
aagaagagatttgcaatgacacatgacattttaaagacagaattaataag
gattgaaaaaatgcaaatggatgaaaatacaatatcataactgtttctat
gttttctgaatcacattatatcactttactaatgtaattacaatagttaa
ttgtcctggtaatgtttaggaagcactcagtaatttttattaaatagttt
ggtatttattgagatctatgaccaaaaatactatgttatacattctgtat
attagattgaatttagtaaagcttctcctttaggaactcttggattattt
ctagctttacttggatatttactatggttacctaaatataaggagaaaaa

gaattctctgtttaggacattgagaaggactttaataactcacttaaaga
aatacaggaaaacacagctaaacaggtagaagagcttaaagaggaaacac
aagaaaggagaattttaaaagcctcatacaacaacaaggggcaatgacag
tggggtatgtcacagatacagaagttaaagccatcctcttctatgaggaa
agaatgtggctggtttctacattatgccacttgtactaagaaatagagat
ttttaggtgataggttaactagacaaagaaaactctgttgagaatagtat
atctcacagctgcacaggtgccaggcagagaggtcaaagatctgagaaaa
tactgtttatcttttgagtttcaagacctataaccagtgactgcctttgg
ttttctgtgtctgcagatattagactgtgagctacaaaccctagcctgct
tacaaactctgctcatgagcaagttatgcaacatttattctctcctgttt
tatctgtaaacagggagaatcatgctcaccacagggggtatttgttgaat
taagtgtgtttatgtgtaaatgtctcatatcaatgcctggcagtatatag
gaactgaagtgttcattgaaagaaacatgaggatcactaacaggatccac
agtggtttccttgggtggcttgaacacagcaatgctctttctcacagtgc
tgaaggacagcaatctaagatgggggactggctatgttagagtattctga
gggatgagaggaatttattgcatttcttcctcctgacttgtccttctctg
catcttcacatcttctcatctttttgttgtataaagatgcctcaaaatgc
tccgtgacagcggtcatgttacattacagctcatcccagtggcctcactt
ttatttcatgcatatgaaatatgcatgggtcacacagtcacattttaaag
agtgaacatagaaattcagcatgttattttgtgaaggcacacacagtcca
ttataagaattcttacactgggatacagtcagaccacgatgcatctctaa
gatttttcctctacttaaacccacttgaggtatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110571233_110572332
seq2: B6Ng01-052K12.b_45_1144 (reverse)

seq1  TTTTCCTCCTTTATATTTTAGGT-ACCATAGTTAAATAT-CAAGTAAAGC  48
      |||| |||| ||||| ||||||| ||||||| ||||||| ||||||||||
seq2  TTTTTCTCC-TTATA-TTTAGGTAACCATAG-TAAATATCCAAGTAAAGC  47

seq1  TAGAAATAATCC-AGAGTTCCTAAAGGAGAAGCTCTACTAAATTCAATCT  97
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TAGAAATAATCCAAGAGTTCCTAAAGGAGAAGCTTTACTAAATTCAATCT  97

seq1  AATATACAGAATGTATAACATAGTATTTTTGGTCATAGATCTCAATAAAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAGAATGTATAACATAGTATTTTTGGTCATAGATCTCAATAAAT  147

seq1  ACCAAACTATTTAATAAAAATTACTGAGTGCTTCCTAAACATTACCAGGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTATTTAATAAAAATTACTGAGTGCTTCCTAAACATTACCAGGA  197

seq1  CAATTAACTATTGTAATTACATTAGTAAAGTGATATAATGTGATTCAGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACTATTGTAATTACATTAGTAAAGTGATATAATGTGATTCAGAA  247

seq1  AACATAGAAACAGTTATGATATTGTATTTTCATCCATTTGCATTTTTTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAAACAGTTATGATATTGTATTTTCATCCATTTGCATTTTTTCA  297

seq1  ATCCTTATTAATTCTGTCTTTAAAATGTCATGTGTCATTGCAAATCTCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATTAATTCTGTCTTTAAAATGTCATGTGTCATTGCAAATCTCTT  347

seq1  CTTCTTTCTCATCATCTTCCTCTCTTCCTGCCTCTTTTTTTGTTGTTGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTCATCATCTTCCTCTCTTCCTGCCTCTTTTTTTGTTGTTGTT  397

seq1  TGTTTTGTTTTTGTTTAATTGTTTTTATTCCCACTCAATAAAAAACTGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTGTTTAATTGTTTTTATTCCCACTCAATAAAAAACTGGC  447

seq1  CCTAGAGACTAGACAAGTTAGGCTTCTAATCCACAGAAATAGATTTTTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGACTAGACAAGTTAGGCTTCTAATCCACAGAAATAGATTTTTGT  497

seq1  TACGTTTATATTTTTACAATCACAGAAATGTTCATTTGTAATGAAATCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTATATTTTTACAATCACAGAAATGTTCATTTGTAATGAAATCTG  547

seq1  TTATGATGCATACTTTAGTCTTAATATTATAAGGAAAGACATGAAAGAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATGCATACTTTAGTCTTAATATTATAAGGAAAGACATGAAAGAAG  597

seq1  TTTGTACTTTAGACACACGTTATAATCTACATTTAATTTACATCCAAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTTTAGACACACGTTATAATCTACATTTAATTTACATCCAAATG  647

seq1  TGCCTTATTTGTGGTTTTTCTCTTTTTCTTTCTATTTTTTGTTTTATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATTTGTGGTTTTTCTCTTTTTCTTTCTATTTTTTGTTTTATTTT  697

seq1  GTAATTTGTGACAGGATATCTGTATCTATTAGGTAGCTCTGGCTGTACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGTGACAGGATATCTGTATCTATTAGGTAGCTCTGGCTGTACTG  747

seq1  TAAATTATTTTATAGACCTTACTGGCCTTGTACTCAGACAGAGTCCTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTTATAGACCTTACTGGCCTTGTACTCAGACAGAGTCCTCTC  797

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAGGACTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAGGACTGGA  847

seq1  ATTGAAGGCTTACCTCACCACTCCCAGTCTCAAAGCTTTCTTTTTAATTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGCTTACCTCACCACTCCCAGTCTCAAAGCTTTCTTTTTAATTA  897

seq1  ACAAATGAGACCTCTCGAGCTTCTGTAAGCCAAAGGCCATGTCTTTTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAGACCTCTCGAGCTTCTGTAAGCCAAAGGCCATGTCTTTTAAA  947

seq1  CAAAGTGGCAGCCTACCGAATGGAAAAAGATTTCACCAGCCTCACATCCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGCAGCCTACCGAATGGAAAAAGATTTCACCAGCCTCACATCCC  997

seq1  ATAGAGGACTAGAATCCAATCTATAAAAAGAACTCAAGAAGATAGATATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGACTAGAATCCAATCTATAAAAAGAACTCAAGAAGATAGATATA  1047

seq1  AAATCCCCAAATAATCAAATATAAAATGTGGTACAGATCTAAACAGAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCAAATAATCAAATATAAAATGTGGTACAGATCTAAACAGAGAA  1097

seq1  TTC  1100
      |||
seq2  TTC  1100

seq1: chr3_110451220_110452313
seq2: B6Ng01-052K12.g_67_1152

seq1  GAATTCTCTGTTTAGGACATTGAGAAGGACTTTAATAACTCACTTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGGACATTGAGAAGGACTTTAATAACTCACTTAAAGA  50

seq1  AATACAGGAAAACACAGCTAAACAGGTAGAAGAGCTTAAAGAGGAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGGAAAACACAGCTAAACAGGTAGAAGAGCTTAAAGAGGAAACAC  100

seq1  AAGAAAGGAGAATTTTAAAAGCCTCATACAACAACAAGGGGCAATGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAGAATTTTAAAAGCCTCATACAACAACAAGGGGCAATGACAG  150

seq1  TGGGGTATGTCACAGATACAGAAGTTAAAGCCATCCTCTTCTATGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTATGTCACAGATACAGAAGTTAAAGCCATCCTCTTCTATGAGGAA  200

seq1  AGAATGTGGCTGGTTTCTACATTATGCCACTTGTACTAAGAAATAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGGCTGGTTTCTACATTATGCCACTTGTACTAAGAAATAGAGAT  250

seq1  TTTTAGGTGATAGGTTAACTAGACAAAGAAAACTCTGTTGAGAATAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTGATAGGTTAACTAGACAAAGAAAACTCTGTTGAGAATAGTAT  300

seq1  ATCTCACAGCTGCACAGGTGCCAGGCAGAGAGGTCAAAGATCTGAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACAGCTGCACAGGTGCCAGGCAGAGAGGTCAAAGATCTGAGAAAA  350

seq1  TACTGTTTATCTTTTGAGTTTCAAGACCTATAACCAGTGACTGCCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTATCTTTTGAGTTTCAAGACCTATAACCAGTGACTGCCTTTGG  400

seq1  TTTTCTGTGTCTGCAGATATTAGACTGTGAGCTACAAACCCTAGCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGTCTGCAGATATTAGACTGTGAGCTACAAACCCTAGCCTGCT  450

seq1  TACAAACTCTGCTCATGAGCAAGTTATGCAACATTTATTCTCTCCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTCTGCTCATGAGCAAGTTATGCAACATTTATTCTCTCCTGTTT  500

seq1  TATCTGTAAACAGGGAGAATCATGCTCACCACAGGGGGTATTTGTTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTAAACAGGGAGAATCATGCTCACCACAGGGGGTATTTGTTGAAT  550

seq1  TAAGTGTGTTTATGTGTAAATGTCTCATATCAATGCCTGGCAGTATATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGTTTATGTGTAAATGTCTCATATCAATGCCTGGCAGTATATAG  600

seq1  GAACTGAAGTGTTCATTGAAAGAAACATGAGGATCACTAACAGGATCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGTGTTCATTGAAAGAAACATGAGGATCACTAACAGGATCCAC  650

seq1  AGTGGTTTCCTTGGGTGGCTTGAACACAGCAATGCTCTTTCTCACAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTCCTTGGGTGGCTTGAACACAGCAATGCTCTTTCTCACAGTGC  700

seq1  TGAAGGACAGCAATCTAAGATGGGGGACTGGCTATGTTAGAGTATTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACAGCAATCTAAGATGGGGGACTGGCTATGTTAGAGTATTCTGA  750

seq1  GGGATGAGAGGAATTTATTGCATTTCTTCCTCCTGACTTGTCCTTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGAGGAATTTATTGCATTTCTTCCTCCTGACTTGTCCTTCTCTG  800

seq1  CATCTTCACATCTTCTCATCTTTTTGTTGTAT-AAGATGCCTCAAAATGC  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATCTTCACATCTTCTCATCTTTTTGTTGTATAAAGATGCCTCAAAATGC  850

seq1  TCCGTGACAGCGGTCATGTTACATTACAGCTCATCCCAGTGGCCTCACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGACAGCGGTCATGTTACATTACAGCTCATCCCAGTGGCCTCACTT  900

seq1  TTATTTCATGCATATGAAATATGCATGGGTCCACACAGTCACATTTTAAA  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTATTTCATGCATATGAAATATGCATGGGT-CACACAGTCACATTTTAAA  949

seq1  GGAGTGAACATAGAAATTCAGCATGTAAATTTTGTGAAGGCACACACAGT  999
       |||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  -GAGTGAACATAGAAATTCAGCATGT-TATTTTGTGAAGGCACACACAGT  997

seq1  CCATTATAAGAA-TCCTACACTGGGATACCAGTCAGACCACCGATTGCAT  1048
      |||||||||||| || |||||||||||| ||||||||||| ||| |||||
seq2  CCATTATAAGAATTCTTACACTGGGATA-CAGTCAGACCA-CGA-TGCAT  1044

seq1  CCTTCTAAGATTTTTTCCCCTACCTAAACCCACTTGAGGGTATTTT  1094
      |  ||||||| ||||||| |||| ||||||||||||| ||||||||
seq2  C--TCTAAGA-TTTTTCCTCTACTTAAACCCACTTGA-GGTATTTT  1086