BAC Information

Click to search

BAC

Clone NameB6Ng01-052P06
Chromosome3 (Build37)
Map Location 41,058,831 - 41,059,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052P06.bB6Ng01-052P06.g
ACCDH876152DH876153
length1,229904
definitionDH876152|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P06, 5' end.DH876153|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacgcagttgaatccttctcaacattctgttttacgggaacactt
cattaccatgacccgcagttctggttccggaatgagggatcttccttgtg
ccagggatggtaaccgtcccaggttttctcgtcccgggttttctcgttcc
aggtcttctcgtcccgggtctcagcaccaactcttacacgcgttctcgcg
accggccaggaagaacgcagcaaaccggaatcttctgcggcaaaagcttt
attgcttacatcttcaggagcaagagagcaagagctctattgcttacatc
tttaggagcaagaagcaagagccagagcaagagagcaaaagagagagcaa
gagctttattgcttacatctttaggagctagagagcaagaaagcaagaaa
aagaacaagaaagcaagagaaagagaaaaagaatggcgaaaccctgtccc
ttttaaggagaattatcctccgcctaggacgtattactccctgattggct
gcagcccattggcccagttgtcatcacgagaaaggcagaacacatggcgg
gaaaactgcccctgcacgtgtgcagattatgtttaccacttagaacacag
ctgtcagcgccatcttataatggcaaatgtgagggcggctcctcacagag
aggcttcagagcatctatgggtgactctagctgagactccaatagtcgga
aatgtgaatcctgaagagccagcttcctgtagccaagcaaagctctcact
ggaaggataaggacaacaaactactcaaaaaacttttgccacaaaatgta
ccctgactactatatgtatagggacaaataaagagcatagactgagtttc
atgtgtttagcaaattatatcttatatcttgggtatcctaaggtttgggg
ctaatatccacttatcagtgaatacatattgtgtgagtttctttgtgaac
gtgttacctcactcaggatgatgccctccaggtcatccatttggctagga
atttcataaaatcattcttttttaataagctgaagtagtacttcattggg
tagaattaccccttttctgtatccattctctgttgaagggcatctaagtc
ttcagcttctgcttatttaaaataagctgcatgaacaaatgacagtgtct
tctaccgtggcatctttgaatatgccggaagaattcgagtcccggttcat
gccattcgagagctcgacgatcctatggt
gaattctttgttaagctctgcaccccatttttgaatatggttatttgatt
tttttggagtccatctttttcagttcttcatatatattggatattagttc
cctatctgacttaggataggtaaaaatccttttccaatctgttggtggac
tttttgtcttattgacggtgtcttgtgccttacagaagctttgcaatttt
atcaggtcccatttgttgattctcagtcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtgcccatgtcttcaaggcttttcccca
cgttctcctctataagtttcactgtctctggttttatgtggagttcctta
atccacttagatttgaccttaatacaaggatataggaatggatcaactag
cattcttctacatgataaccaccagttgtgccagcaccatttgttgtctt
ttttccactggatggtttagactcccttgtaaaagatcaagtgatcatag
gtgtgtgggttcatttctgggtcttcaattctattccattggcctacgtc
tctgtagctataccagtacaatgcagtttttaccatatttgctctgtagt
acagttttaggtcaggcatggtgattccaccagaggtttcctttatcctt
gagtagagtttttgctttcctaggttttttgttatttccagatgaatatg
cagattgccctttctaattcgttgaagaattgagttggaattttgatggg
gattgcattgaatctgtagattgcttttggcaagatagctattttttact
atattgatcctgccattccatggagcattggagatcttccatcttctgag
atcttctttaatttctttcttcagagacttgaagttcatatcatacatat
cttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058831_41059396
seq2: B6Ng01-052P06.g_411_970 (reverse)

seq1  AAAGATCTGTATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGA  50
      |||||| ||||||| | |||||||||||||||||||||||||||||||||
seq2  AAAGATATGTATGATATGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGA  50

seq1  AGATCTCAGAAGATGGAAAGATCTCCCATGCT-CATGGATTGGCAGGATC  99
      |||||||||||||||| ||||||||| ||||| |||||| ||||||||||
seq2  AGATCTCAGAAGATGG-AAGATCTCCAATGCTCCATGGAATGGCAGGATC  99

seq1  AACATTGT-AAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATG  148
      || || || |||||| ||||||||||||||||||||||||||||||||||
seq2  AATATAGTAAAAAATAGCTATCTTGCCAAAAGCAATCTACAGATTCAATG  149

seq1  CAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCA  198
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCA  199

seq1  ATCTGCAAATTCATCTGG-AATAACAAAAAACCTAGGATAGCAAAAACTC  247
      ||||||| |||||||||| ||||||||||||||||||| |||||||||||
seq2  ATCTGCATATTCATCTGGAAATAACAAAAAACCTAGGAAAGCAAAAACTC  249

seq1  TTCTCAAGGATAACAG-AACCTCTGGTGGAATCACCATGCCTGACCTAAA  296
      | |||||||||||  | |||||||||||||||||||||||||||||||||
seq2  TACTCAAGGATAAAGGAAACCTCTGGTGGAATCACCATGCCTGACCTAAA  299

seq1  GCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTG  346
       || ||||||||||||| | || |||||||||||| ||||||||||||  
seq2  ACTGTACTACAGAGCAAATATGGTAAAAACTGCATTGTACTGGTATAGCT  349

seq1  ACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCA  396
      ||||| | | || |||||||||||||||||||||| |||||| ||| |||
seq2  ACAGAGACGTAGGCCAATGGAATAGAATTGAAGACCCAGAAATGAACCCA  399

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG  446
      |||||||||| ||||||||||||  |||||||||   |||||||||||||
seq2  CACACCTATGATCACTTGATCTTTTACAAGGGAGTCTAAACCATCCAGTG  449

seq1  GAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTAT  496
      |||||||||         |||||||||||||||||||||||||| |||||
seq2  GAAAAAAGA---------CAACAAATGGTGCTGGCACAACTGGTGGTTAT  490

seq1  CATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTC  546
      ||||||||||||||| | |||||||| |||||| |||||||| |||||||
seq2  CATGTAGAAGAATGCTAGTTGATCCATTCCTATATCCTTGTATTAAGGTC  540

seq1  AAATCTAAGTGGATCAAGGA  566
      |||||||||||||| |||||
seq2  AAATCTAAGTGGATTAAGGA  560