BAC Information

Click to search

BAC

Clone NameB6Ng01-053B04
Chromosome3 (Build37)
Map Location 71,940,878 - 71,941,411
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053B04.g
ACCDH876231
length528
definitionDH876231|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgagtttgtcattcaaaacagactcaggtgactataacaatgactttaaa
aatcagcgtgaatatgtgagaatattagatagatagatagatgatagata
gatagatactatgtactatatacatataattcttactaaatgaacagtct
ttgcaacatccatgtattaaatgatatacttgtaatgtaccatataaatt
taaaaatatgaaactacaagtaagagttaaaggtatttagtacaattcaa
tcatctgcattgctgaggtatatattattattaaatttaatatagtgaaa
tggagcctaaaagtagtaaaacatttataacttattgagaaatataaaaa
atatttttttatgtattttcctcaattacattcccaatgctatcccaaaa
gtcccccacagccccccccccactcccctacccacccattcccatttttt
ggccctggtgttcccctgtactgggacatataaggtttgcctgaccaatg
ggcctctctttccatatgcagctagagt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71940878_71941411
seq2: B6Ng01-053B04.g_73_606

seq1  GAATTCTGAGTTTGTCATTCAAAACAGACTCAGGTGACTATAACAATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTTGTCATTCAAAACAGACTCAGGTGACTATAACAATGAC  50

seq1  TTTAAAAATCAGCGTGAATATGTGAGAATATTAGATAGATAGATAGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCAGCGTGAATATGTGAGAATATTAGATAGATAGATAGATGA  100

seq1  TAGATAGATAGATACTATGTACTATATACATATAATTCTTACTAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATACTATGTACTATATACATATAATTCTTACTAAATGAA  150

seq1  CAGTCTTTGCAACATCCATGTATTAAATGATATACTTGTAATGTACCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTGCAACATCCATGTATTAAATGATATACTTGTAATGTACCATA  200

seq1  TAAATTTAAAAATATGAAACTACAAGTAAGAGTTAAAGGTATTTAGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAAAATATGAAACTACAAGTAAGAGTTAAAGGTATTTAGTACA  250

seq1  ATTCAATCATCTGCATTGCTGAGGTATATATTATTATTAAATTTAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCATCTGCATTGCTGAGGTATATATTATTATTAAATTTAATATA  300

seq1  GTGAAATGGAGCCTAAAAGTAGTAAAACATTTATAACTTATTGAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGGAGCCTAAAAGTAGTAAAACATTTATAACTTATTGAGAAATA  350

seq1  TAAAAAATATTTTTTTATGTATTTTCCTCAATTACATTCCCAATGCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATATTTTTTTATGTATTTTCCTCAATTACATTCCCAATGCTATC  400

seq1  CCAAAAGTCCCCCACAGCCCCCCCCCCACTCCCCTACCCACCCATTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTCCCCCACAGCCCCCCCCCCACTCCCCTACCCACCCATTCCCA  450

seq1  TTTTTTGGCCCTGGTGTTCCCCTGTACTGGGACATATAAGGTTTGCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCCCTGGTGTTCCCCTGTACTGGGACATATAAGGTTTGCCTGA  500

seq1  CCAATGGGCCTCTCTTTCCATATGCAGCTAGAGT  534
      ||||||||||||||||||||||||||||||||||
seq2  CCAATGGGCCTCTCTTTCCATATGCAGCTAGAGT  534