BAC Information

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BAC

Clone NameB6Ng01-053B17
Chromosome3 (Build37)
Map Location 115,441,140 - 115,561,987
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfm3, EG546808, Edg1
Downstream geneDph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053B17.bB6Ng01-053B17.g
ACCDH876252DH876253
length1,185551
definitionDH876252|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B17, 5' end.DH876253|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,441,140 - 115,442,366)(115,561,431 - 115,561,987)
sequence
gaattcaaaaaaagcattcattgcgtgcttcttgccactgccagacattg
tacaaggagccagactcctcattcattcttgtacgcacctagtaaagagg
ccagcacatggcagaaattcaatgcgtattatgagtaaaatattatcgaa
gaggagaaaagaaagcactgaattggcttaaataatgaagatttttttca
aatgcagtattttctcaagtttggcaacaacacccaaataataaaaatat
aaaaaataaaaaatgacagtttactttgggcaaatataacagacatttaa
atatgtttctatttattttgtggttaaaaagctatccatcaaatattttg
gttgtttgagggttaagtctacacttggaactatcaactaagaaaaatgc
tacccaaacaagacataaatcattccttgatgatcaaaagacaatgtgag
tctctcgcaactgccattagggaaccatttgtcattggctgggctctatc
tgtacatggggttaagagtctagattaataaatgcttgctctatggctgt
gatttattttttatgcacagttaatgatacataattatgagacccccagg
ctacagtcaatcatttaaaaaataatttgaagcaaaggaaagtggtacca
acgaaggctactcctttaagccacaaaaaaaaaacaaattcatttgaaag
ataataggtaggtagatagatctcagaagagaaggctggaagcccaggct
cagagcaaaacagcaggcatcaagggaaggcaggcagcacgaaacctagc
taagatgctgtgtggatataaagtcccagaccttctgtgccatcttgcca
aaaccagcaaagggtctcgtggacaagacagggaattcacagtctgagct
agatatgggagtctggactaccttgttggggcagagatggacaatttggc
cccttgaatgtatgagaatctgagcttttctcagagactcagaaaaaagc
atgtgctcatcagtagtgattttaaacaatcaactatattgcttgtgatg
acagtatgtcagataatataaatacaagtctattatatgttttatcatat
tcggctagggagaggtttgccttttaatctttccaaatgaagtctgcatt
tatccagatccagttttttgttggttgttggtttt
cagggaggggcgtgtgcccttttgccttgattggttagcactatccctaa
gggtttgactgattttataactggttgggctcaggagacttcccaggggg
tggtttactcattctagctacctattcttacttcaggccagatgaaaagg
tgcccttggattggctgcacactgctgtggttggctgactatggattctt
ggattccgattctcatttctgggaaacagaaacttaggcctagcctccaa
aattgccagtttgccgcctgtcgtggagtcacctctgctctagctaactt
agtcctctcagacctaggacccctccccccccacgcacatgaagcagata
tgcaatgtggtattcatgtgagtcccccaacaactggagagggactgccc
ccgaatctgttgcctgtctgtggatcctgttcccctaattgggctggcta
ccttgtctggcctcctgcagtgacttgatgtgccagggtggggtgatatc
cagggggtccttttcagaggagagagaagaggaggtattgtggggggggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_115441140_115442366
seq2: B6Ng01-053B17.b_45_1229

seq1  GAATTCAAAAAAAGCATTCATTGCGTGCTTCTTGCCACTGCCAGACATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAAAGCATTCATTGCGTGCTTCTTGCCACTGCCAGACATTG  50

seq1  TACAAGGAGCCAGACTCCTCATTCATTCTTGTACGCACCTAGTAAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGAGCCAGACTCCTCATTCATTCTTGTACGCACCTAGTAAAGAGG  100

seq1  CCAGCACATGGCAGAAATTCAATGCGTATTATGAGTAAAATATTATCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACATGGCAGAAATTCAATGCGTATTATGAGTAAAATATTATCGAA  150

seq1  GAGGAGAAAAGAAAGCACTGAATTGGCTTAAATAATGAAGATTTTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAAAGAAAGCACTGAATTGGCTTAAATAATGAAGATTTTTTTCA  200

seq1  AATGCAGTATTTTCTCAAGTTTGGCAACAACACCCAAATAATAAAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTATTTTCTCAAGTTTGGCAACAACACCCAAATAATAAAAATAT  250

seq1  AAAAAATAAAAAATGACAGTTTACTTTGGGCAAATATAACAGACATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAAATGACAGTTTACTTTGGGCAAATATAACAGACATTTAA  300

seq1  ATATGTTTCTATTTATTTTGTGGTTAAAAAGCTATCCATCAAATATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTCTATTTATTTTGTGGTTAAAAAGCTATCCATCAAATATTTTG  350

seq1  GTTGTTTGAGGGTTAAGTCTACACTTGGAACTATCAACTAAGAAAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGAGGGTTAAGTCTACACTTGGAACTATCAACTAAGAAAAATGC  400

seq1  TACCCAAACAAGACATAAATCATTCCTTGATGATCAAAAGACAATGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAACAAGACATAAATCATTCCTTGATGATCAAAAGACAATGTGAG  450

seq1  TCTCTCGCAACTGCCATTAGGGAACCATTTGTCATTGGCTGGGCTCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGCAACTGCCATTAGGGAACCATTTGTCATTGGCTGGGCTCTATC  500

seq1  TGTACATGGGGTTAAGAGTCTAGATTAATAAATGCTTGCTCTATGGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGGGTTAAGAGTCTAGATTAATAAATGCTTGCTCTATGGCTGT  550

seq1  GATTTATTTTTTATGCACAGTTAATGATACATAATTATGAGACCCCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTTTTATGCACAGTTAATGATACATAATTATGAGACCCCCAGG  600

seq1  CTACAGTCAATCATTTAAAAAATAATTTGAAGCAAAGGAAAGTGGTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCAATCATTTAAAAAATAATTTGAAGCAAAGGAAAGTGGTACCA  650

seq1  ACGAAGGCTACTCCTTTAAGCCACAAAAAAAAAACAAATTCATTTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGCTACTCCTTTAAGCCACAAAAAAAAAACAAATTCATTTGAAAG  700

seq1  ATAATAGGTAGGTAGATAGATCTCAGAAGAGAAGGCTGGAAGCCCAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGGTAGGTAGATAGATCTCAGAAGAGAAGGCTGGAAGCCCAGGCT  750

seq1  CAGAGCAAAACAGCAGGCATCAAGGGAAGGCAGGCAGCAGGAAACCTAGC  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGAGCAAAACAGCAGGCATCAAGGGAAGGCAGGCAGCACGAAACCTAGC  800

seq1  TAAGATGCTGTGTGGATATAAGGTCCCAGACCTTCTGTGCCATCTTGCCA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAGATGCTGTGTGGATATAAAGTCCCAGACCTTCTGTGCCATCTTGCCA  850

seq1  AAACCAGCAAAAGGGTCTCGTGGACAAGGACAGGGAATTCACAGTCTGAG  900
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  AAACCAGC-AAAGGGTCTCGTGGACAA-GACAGGGAATTCACAGTCTGAG  898

seq1  CTAAGATAATGGGAGTCTGGACTACCTTGTTGGGGCAGAAGATGGACAAT  950
      || |||| |||||||||||||||||||||||||||||| |||||||||||
seq2  CT-AGAT-ATGGGAGTCTGGACTACCTTGTTGGGGCAG-AGATGGACAAT  945

seq1  TTGGCCCCTTGAATGTATTGAGAATCTGAGCCTTTTCTTCAGGAGACTCA  1000
      ||||||||||||||||| |||||||||||| |||||| ||| ||||||||
seq2  TTGGCCCCTTGAATGTA-TGAGAATCTGAG-CTTTTC-TCA-GAGACTCA  991

seq1  GAAAAAAAGCAATGGTTGCTCCATCAGTAGTGATTTTAAAACAAATCCAA  1050
      | |||||||| |||  |||| |||||||||||||||||||   ||||  |
seq2  G-AAAAAAGC-ATG--TGCT-CATCAGTAGTGATTTTAAA--CAATC--A  1032

seq1  ACTATATTGCTTGTGATGACAAGTAATGTCAAGAATAAATATAATACAAG  1100
      |||||||||||||||||||| ||| ||||| |||  | ||| ||||||||
seq2  ACTATATTGCTTGTGATGAC-AGT-ATGTC-AGATAATATA-AATACAAG  1078

seq1  TCTATTATAATGTTTTTAATTCAATAATA-GGGGCTAGGGAGAGGGTTTG  1149
      |||||||| |||||||       || |||   ||||||||||| ||||||
seq2  TCTATTAT-ATGTTTT-------ATCATATTCGGCTAGGGAGA-GGTTTG  1119

seq1  GCTGGTAAAATACTTGTACAAATATGAAGGTCTGCATTTTATCCACAGAA  1199
       ||  |||    ||| | |||  ||||| ||||||| ||||||||    |
seq2  CCTTTTAA---TCTT-TCCAA--ATGAA-GTCTGCA-TTTATCCA---GA  1158

seq1  TCCATGTTTTTTTGTT--TTGTTTTGTTTT  1227
      ||||   |||||||||  ||| || |||||
seq2  TCCA--GTTTTTTGTTGGTTG-TTGGTTTT  1185

seq1: chr3_115561431_115561987
seq2: B6Ng01-053B17.g_70_626 (reverse)

seq1  CCCCCCCCCCACAATACCTCCTCTTCTCTCTCCTCTGAAAAGGACCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCACAATACCTCCTCTTCTCTCTCCTCTGAAAAGGACCCCCT  50

seq1  GGATATCACCCCACCCTGGCACATCAAGTCACTGCAGGAGGCCAGACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCACCCCACCCTGGCACATCAAGTCACTGCAGGAGGCCAGACAAG  100

seq1  GTAGCCAGCCCAATTAGGGGAACAGGATCCACAGACAGGCAACAGATTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGCCCAATTAGGGGAACAGGATCCACAGACAGGCAACAGATTCG  150

seq1  GGGGCAGTCCCTCTCCAGTTGTTGGGGGACTCACATGAATACCACATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGTCCCTCTCCAGTTGTTGGGGGACTCACATGAATACCACATTGC  200

seq1  ATATCTGCTTCATGTGCGTGGGGGGGGAGGGGTCCTAGGTCTGAGAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCTTCATGTGCGTGGGGGGGGAGGGGTCCTAGGTCTGAGAGGAC  250

seq1  TAAGTTAGCTAGAGCAGAGGTGACTCCACGACAGGCGGCAAACTGGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAGCTAGAGCAGAGGTGACTCCACGACAGGCGGCAAACTGGCAAT  300

seq1  TTTGGAGGCTAGGCCTAAGTTTCTGTTTCCCAGAAATGAGAATCGGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGCTAGGCCTAAGTTTCTGTTTCCCAGAAATGAGAATCGGAATC  350

seq1  CAAGAATCCATAGTCAGCCAACCACAGCAGTGTGCAGCCAATCCAAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCCATAGTCAGCCAACCACAGCAGTGTGCAGCCAATCCAAGGGC  400

seq1  ACCTTTTCATCTGGCCTGAAGTAAGAATAGGTAGCTAGAATGAGTAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCATCTGGCCTGAAGTAAGAATAGGTAGCTAGAATGAGTAAACC  450

seq1  ACCCCCTGGGAAGTCTCCTGAGCCCAACCAGTTATAAAATCAGTCAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTGGGAAGTCTCCTGAGCCCAACCAGTTATAAAATCAGTCAAACC  500

seq1  CTTAGGGATAGTGCTAACCAATCAAGGCAAAAGGGCACACGCCCCTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGATAGTGCTAACCAATCAAGGCAAAAGGGCACACGCCCCTCCCT  550

seq1  GGAATTC  557
      |||||||
seq2  GGAATTC  557