BAC Information

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BAC

Clone NameB6Ng01-053C22
Chromosome3 (Build37)
Map Location 116,149,872 - 116,280,980
singlet/doubletdoublet
Overlap geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a
Downstream geneA930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053C22.bB6Ng01-053C22.g
ACCDH876306DH876307
length1,154254
definitionDH876306|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C22, 5' end.DH876307|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,279,818 - 116,280,980)(116,149,872 - 116,150,123)
sequence
gaattcactaaagattagcttttatctgtcggcaggaatgaaaccaacat
ttgcatggtcatcttttttcatgttttctaaatgaacagctgtaaatgtc
acctaatatgaatcttaaaatacagaaactagtaatattcccattctggg
cataacaatattggactgaggccacaatccctgggttcaaatccaactaa
cgccacttgctgagacttgggcatacataacaaacgtctctgcatccttc
cctcatcctttttgttgcttaagagaagggcctggcacgcactatcaggt
gcacattgttaatgttttgaatgcagttttcccctccccagatcctccta
cataataatgaaatcaggctactgaaagaatggatttcaaactagttggg
tctgttgtgattattcctaggctcctagttgtctggtatattgcttctta
tttttcctaggtggctttggatgatcagtagcagaaagtctatcttacct
gtctagtgagtcaggaagctgttgcaggctgttgcttcccatatccagcc
actcgagggcaggcatgtccaacacagcatgagggatcgtagtgaactga
ttcatactcaggtcaaggtgagtgagttttaacagtttgctgagctaagg
acgaagtaaggattttaagtaatcatccacagtgttatgtaaattactag
aagacacaccctgatgagctatttcatctaaaaagttcatgttatgtaga
ttttgtttaaagtagtagcccacacacaacaaatcacacatagagttgac
tgacttccatcattccacctgagctttgtttagacacaggagtccacaac
aaataaaatgtaaggataatagaacctgggcatcatggtaaaaatataaa
tcctataaatcctagagactgagggcagcttgggctacaaaggcagtgtc
tcagaaagtgagacaggtaggtgtggtggctcacgcctttcatccaagca
ctaaagccaaaaggccacatagttcaagccatgtgttctatgtggtggat
tcccagacagccaaagctacacatcaatttctctcctcaacaaaccaaac
atgaaataacttggctaaagtaaatgaaatagaaatatttcgatacactc
ttct
aaagaagtcagaagtgaagtggttcctgtgagacatactacattttatgg
gggggggggtgtgatacactagtgttgatgacacacaggacaaaggagat
gttcacccacaaaaatatctgcacctgtcaaccccccctttctaagaaag
atcagcatcgtcgacatttaaccctctagacactgttattagccatgcaa
ttaaaggtgttttaactcactgactatttttatttttttttctagtggag
ttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116279818_116280980
seq2: B6Ng01-053C22.b_42_1195 (reverse)

seq1  AGAAG-TTGTATCTGAAATTTTTTCTTATTTCATTTTACTTTAGCCCAGG  49
      |||||  |||||| ||||| |||   ||||||| |||||||||| ||| |
seq2  AGAAGAGTGTATC-GAAATATTT--CTATTTCA-TTTACTTTAG-CCAAG  45

seq1  TTATTTTCTTGTTTTGTTTTGTTGAGAGAG-GATATTGATGTGTAGCTTT  98
      ||| |||| || |||| ||||||||| ||| || ||||||||||||||||
seq2  TTA-TTTCATG-TTTGGTTTGTTGAG-GAGAGAAATTGATGTGTAGCTTT  92

seq1  GGCTGTCTTGGAACTCACCACATAGACCACATGGCCTTGAACTATGTGGC  148
      |||||||| ||||  ||||||||||| ||||||| |||||||||||||||
seq2  GGCTGTCTGGGAATCCACCACATAGAACACATGG-CTTGAACTATGTGGC  141

seq1  CTTTTGCCTCTAGTGCTTGGATTGAAGGCGTGAGCCACCACACCTACCTG  198
      |||||| || ||||||||||||  ||||||||||||||||||||||||||
seq2  CTTTTGGCTTTAGTGCTTGGATGAAAGGCGTGAGCCACCACACCTACCTG  191

seq1  TCTCACCTTTCTGAGACACTGCCTTTGTAGCCCAAGCTGCCCTCAGTCTC  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCA-CTTTCTGAGACACTGCCTTTGTAGCCCAAGCTGCCCTCAGTCTC  240

seq1  TAGGATTTATAGGATTTATATTTTTTACCATGATGCCCAGGTTCTATTAT  298
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGGATTTATAGGATTTATA-TTTTTACCATGATGCCCAGGTTCTATTAT  289

seq1  CCTTACATTTTATTTGTTGTGGACTCCTGTGTCTAAACAAAGCTCAGGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATTTTATTTGTTGTGGACTCCTGTGTCTAAACAAAGCTCAGGTG  339

seq1  GAATGATGGAAGTCAGTCAACTCTATGTGTGATTTGTTGTGTGTGGGCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGGAAGTCAGTCAACTCTATGTGTGATTTGTTGTGTGTGGGCTA  389

seq1  CTACTTTAAACAAAATCTACATAACATGAACTTTTTAGATGAAATAGCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTAAACAAAATCTACATAACATGAACTTTTTAGATGAAATAGCTC  439

seq1  ATCAGGGTGTGTCTTCTAGTAATTTACATAACACTGTGGATGATTACTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGTGTGTCTTCTAGTAATTTACATAACACTGTGGATGATTACTTA  489

seq1  AAATCCTTACTTCGTCCTTAGCTCAGCAAACTGTTAAAACTCACTCACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTACTTCGTCCTTAGCTCAGCAAACTGTTAAAACTCACTCACCT  539

seq1  TGACCTGAGTATGAATCAGTTCACTACGATCCCTCATGCTGTGTTGGACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAGTATGAATCAGTTCACTACGATCCCTCATGCTGTGTTGGACA  589

seq1  TGCCTGCCCTCGAGTGGCTGGATATGGGAAGCAACAGCCTGCAACAGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCCTCGAGTGGCTGGATATGGGAAGCAACAGCCTGCAACAGCTT  639

seq1  CCTGACTCACTAGACAGGTAAGATAGACTTTCTGCTACTGATCATCCAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCACTAGACAGGTAAGATAGACTTTCTGCTACTGATCATCCAAA  689

seq1  GCCACCTAGGAAAAATAAGAAGCAATATACCAGACAACTAGGAGCCTAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTAGGAAAAATAAGAAGCAATATACCAGACAACTAGGAGCCTAGG  739

seq1  AATAATCACAACAGACCCAACTAGTTTGAAATCCATTCTTTCAGTAGCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCACAACAGACCCAACTAGTTTGAAATCCATTCTTTCAGTAGCCT  789

seq1  GATTTCATTATTATGTAGGAGGATCTGGGGAGGGGAAAACTGCATTCAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTATTATGTAGGAGGATCTGGGGAGGGGAAAACTGCATTCAAA  839

seq1  ACATTAACAATGTGCACCTGATAGTGCGTGCCAGGCCCTTCTCTTAAGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACAATGTGCACCTGATAGTGCGTGCCAGGCCCTTCTCTTAAGCA  889

seq1  ACAAAAAGGATGAGGGAAGGATGCAGAGACGTTTGTTATGTATGCCCAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGATGAGGGAAGGATGCAGAGACGTTTGTTATGTATGCCCAAG  939

seq1  TCTCAGCAAGTGGCGTTAGTTGGATTTGAACCCAGGGATTGTGGCCTCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAAGTGGCGTTAGTTGGATTTGAACCCAGGGATTGTGGCCTCAG  989

seq1  TCCAATATTGTTATGCCCAGAATGGGAATATTACTAGTTTCTGTATTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATTGTTATGCCCAGAATGGGAATATTACTAGTTTCTGTATTTTA  1039

seq1  AGATTCATATTAGGTGACATTTACAGCTGTTCATTTAGAAAACATGAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATATTAGGTGACATTTACAGCTGTTCATTTAGAAAACATGAAAA  1089

seq1  AAGATGACCATGCAAATGTTGGTTTCATTCCTGCCGACAGATAAAAGCTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACCATGCAAATGTTGGTTTCATTCCTGCCGACAGATAAAAGCTA  1139

seq1  ATCTTTAGTGAATTC  1163
      |||||||||||||||
seq2  ATCTTTAGTGAATTC  1154

seq1: chr3_116149872_116150123
seq2: B6Ng01-053C22.g_74_327

seq1  AAAGAAGTCAGAAGTGAAGTGGTTCCTGTGAGACATACTACATTTTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTCAGAAGTGAAGTGGTTCCTGTGAGACATACTACATTTTATGG  50

seq1  GGGGGGGGGTGTGATACACTAGTGTTGATGACACACAGGACAAAGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGTGTGATACACTAGTGTTGATGACACACAGGACAAAGGAGAT  100

seq1  GTTCACCCACAAAAATATCTGCACCTGTCAACCCCCCCTTTCTAAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCCACAAAAATATCTGCACCTGTCAACCCCCCCTTTCTAAGAAAG  150

seq1  ATCAGCATCGTCGACATTTAACCCACTAGACACTGTTATTAGCCATGCAA  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCAGCATCGTCGACATTTAACCCTCTAGACACTGTTATTAGCCATGCAA  200

seq1  TTAAAGGTGTTTTAACTCACTGACAA--CCAGATACAAATTCTAGTGGAG  248
      |||||||||||||||||||||||| |       |     |||||||||||
seq2  TTAAAGGTGTTTTAACTCACTGACTATTTTTATTTTTTTTTCTAGTGGAG  250

seq1  TTAT  252
      ||||
seq2  TTAT  254