BAC Information

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BAC

Clone NameB6Ng01-053F02
Chromosome3 (Build37)9 (Build37)
Map Location 45,385,717 - 45,386,25151,654,386 - 51,655,395
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F02.bB6Ng01-053F02.g
ACCDH876400DH876401
length1,0761,007
definitionDH876400|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F02, 5' end.DH876401|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,385,717 - 45,386,251)(51,654,386 - 51,655,395)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcatagaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagttgattatt
tccctgccgtctactcctcttgggtgaatttgcttccttttttctagagc
ttttagatgtgtgtcaagctgctagtatgtgctctctccgtttttcttga
tgcactcatagctatgagtttccctcttaaaaatgcttccatgtgtccca
aaggttgggatacgtgtggcctcatttcataaactctaaaatctttaatt
tcttctttatccttccttgacacaag
gaattcaagcgttattatccacagaacccacttattatgtcgcacttcat
atacacatcctcatcttaaccacaaaacgaaaaagaatagggaaaagtat
acgaagggatacagaagccccactgctaactgctaatgctatagactgca
gtctgggtacagagctgtatctgggtcagcagctgacacttatctctggc
actggtgtaacacgaatgctttagaccaccagcactgccctttagaccag
ggcaattccaagcattctccatagggtgcttcaggtgcagaaacatactt
tgttgttcaagtttatcaagtatcagtaatgaggcctcacacaggatttc
ttgtgtaaagggcaggttgctgtaagtttggaagctctagggggtcgaga
aggaaggggagggataggaagacatcaaggaaactcgggcaatctctgac
tactcttagcatggctccctactacacactctaaggtgcatatgaggtta
gtttatgatcaatggtttctatgcctcagacccctgatcaacagccagtc
acaggggtgggagctcagtctctaatataattggaaaggaatcactttaa
ggaacttctctcagcattgtggatctggcaaatgttggtgctgagaactg
aactcaggcttctctgaactcaaaggccgccgccgccactgccgccttct
tttttttttttttgtttttggcttttttttttttttttttgctttcttag
cacttggttcagctcctgaaaaggaaaaattctaacaactgatttttttt
ctccctctgttagaatatcaacttgccatacataagtttaccagggacag
catggttcaacaaacccgcataagagaagtctacctttagccacttaaga
aactgtgtttaagaaacaccgtgaatttcaatgtatcaaatggagagtga
ggaattaaaatgagaatgtcatttccttttttgaaattcattttctagct
ctgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45385717_45386251
seq2: B6Ng01-053F02.b_597_1119 (reverse)

seq1  CTTG-GTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTT  49
      |||| ||||||||||| |||||| |||||||||||||  |||||||||||
seq2  CTTGTGTCAAGGAAGG-ATAAAG-AAGAAATTAAAGA--TTTTAGAGTTT  46

seq1  AATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGC  99
       ||| |||||| ||||| ||||| || |||||||||||||| ||| ||||
seq2  -ATG-AAATGAGGCCAC-ACGTATCCCAACCTTTGGGACAC-ATGGAAGC  92

seq1  ATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGG  149
      |||| ||||||||||||||||||||||||||| | ||||||||||   ||
seq2  ATTTTTAAGAGGGAAACTCATAGCTATGAGTG-CATCAAGAAAAA--CGG  139

seq1  AGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAA  199
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  AGAGAGCACATACTAGCAGCTTGAC-ACACATCTAAAAGCTCTAG-AAAA  187

seq1  AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCA-GGAAATAATCAAAC  248
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGGAAATAATC-AAC  236

seq1  TCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT  286

seq1  AACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACC  336

seq1  CTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAA  386

seq1  TCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAAC  436

seq1  ACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCT  486

seq1  GGACGAAATGGACAAATTTCTGGACAGATACCAGGTA  535
      |||||||||||||||||||||||||||||||||||||
seq2  GGACGAAATGGACAAATTTCTGGACAGATACCAGGTA  523

seq1: chr9_51654386_51655395
seq2: B6Ng01-053F02.g_68_1074 (reverse)

seq1  CAGTCCAGAGCTAGAAAATGAATTTACAAAAAAGGTAATGACATTTCTCA  50
      |||| |||||||||||||||||||| ||||||||| ||||||| ||||||
seq2  CAGT-CAGAGCTAGAAAATGAATTT-CAAAAAAGGAAATGACA-TTCTCA  47

seq1  TTTTATGTCCCTCACTCTCCATTTTGATACATTTGAAATTCACGGTG-TT  99
      |||||  | |||||||||||| ||||||||| ||||||||||||||| ||
seq2  TTTTA-ATTCCTCACTCTCCA-TTTGATACA-TTGAAATTCACGGTGTTT  94

seq1  CTTAAACACAGTTTCTTAAGTGGCTAAA-GTAGACTTC-CTTATGCGGGT  147
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CTTAAACACAGTTTCTTAAGTGGCTAAAGGTAGACTTCTCTTATGCGGGT  144

seq1  TTGTTG-ACCATGCTGT-CCTGGTAAAC-TATGTATGGCAAGTTGATA-T  193
      |||||| |||||||||| |||||||||| ||||||||||||||||||| |
seq2  TTGTTGAACCATGCTGTCCCTGGTAAACTTATGTATGGCAAGTTGATATT  194

seq1  CTAACAGAGGGAGAAAAAAAAATCAGTTGTTAG-ATTTTTCCTTTTCAGG  242
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  CTAACAGAGGGAG-AAAAAAAATCAGTTGTTAGAATTTTTCCTTTTCAGG  243

seq1  AGGCTGAACCAAGTGCTAAGAAAGCAAAAAAAAAAAAAAAAAAAAAACCA  292
      | |||||||||||||||||||||||   |||||||||||||||||| |||
seq2  A-GCTGAACCAAGTGCTAAGAAAGC---AAAAAAAAAAAAAAAAAAGCCA  289

seq1  AAAACAAAAAAAAAAAAAAGAAGGCGGCAGTGGCGGCGGCGGCCTTTGAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAAAAAAAAGAAGGCGGCAGTGGCGGCGGCGGCCTTTGAG  339

seq1  TTCAGAGAAGCCTGAGTTCAGTTCTCAGCACCAACATTTGCCAGATCCAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAAGCCTGAGTTCAGTTCTCAGCACCAACATTTGCCAGATCCAC  389

seq1  AATGCTGAGAGAAGTTCCTTAAAGTGATTCCTTTCCAATTATATTAGAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAGAGAAGTTCCTTAAAGTGATTCCTTTCCAATTATATTAGAGA  439

seq1  CTGAGCTCCCACCCCTGTGACTGGCTGTTGATCAGGGGTCTGAGGCATAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCCCACCCCTGTGACTGGCTGTTGATCAGGGGTCTGAGGCATAG  489

seq1  AAACCATTGATCATAAACTAACCTCATATGCACCTTAGAGTGTGTAGTAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTGATCATAAACTAACCTCATATGCACCTTAGAGTGTGTAGTAG  539

seq1  GGAGCCATGCTAAGAGTAGTCAGAGATTGCCCGAGTTTCCTTGATGTCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATGCTAAGAGTAGTCAGAGATTGCCCGAGTTTCCTTGATGTCTT  589

seq1  CCTATCCCTCCCCTTCCTTCTCGACCCCCTAGAGCTTCCAAACTTACAGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCTCCCCTTCCTTCTCGACCCCCTAGAGCTTCCAAACTTACAGC  639

seq1  AACCTGCCCTTTACACAAGAAATCCTGTGTGAGGCCTCATTACTGATACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCCTTTACACAAGAAATCCTGTGTGAGGCCTCATTACTGATACT  689

seq1  TGATAAACTTGAACAACAAAGTATGTTTCTGCACCTGAAGCACCCTATGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTTGAACAACAAAGTATGTTTCTGCACCTGAAGCACCCTATGG  739

seq1  AGAATGCTTGGAATTGCCCTGGTCTAAAGGGCAGTGCTGGTGGTCTAAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTTGGAATTGCCCTGGTCTAAAGGGCAGTGCTGGTGGTCTAAAG  789

seq1  CATTCGTGTTACACCAGTGCCAGAGATAAGTGTCAGCTGCTGACCCAGAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTGTTACACCAGTGCCAGAGATAAGTGTCAGCTGCTGACCCAGAT  839

seq1  ACAGCTCTGTACCCAGACTGCAGTCTATAGCATTAGCAGTTAGCAGTGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTGTACCCAGACTGCAGTCTATAGCATTAGCAGTTAGCAGTGGG  889

seq1  GCTTCTGTATCCCTTCGTATACTTTTCCCTATTCTTTTTCGTTTTGTGGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTATCCCTTCGTATACTTTTCCCTATTCTTTTTCGTTTTGTGGT  939

seq1  TAAGATGAGGATGTGTATATGAAGTGCGACATAATAAGTGGGTTCTGTGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAGGATGTGTATATGAAGTGCGACATAATAAGTGGGTTCTGTGG  989

seq1  ATAATAACGCTTGAATTC  1010
      ||||||||||||||||||
seq2  ATAATAACGCTTGAATTC  1007