BAC Information

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BAC

Clone NameB6Ng01-053F06
Chromosome3 (Build37)
Map Location 40,224,789 - 40,369,235
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F06.bB6Ng01-053F06.g
ACCDH876408DH876409
length1,1421,038
definitionDH876408|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F06, 5' end.DH876409|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,224,789 - 40,225,934)(40,368,184 - 40,369,235)
sequence
gaattctacatttgaggcgttcctcagtcccttcccctgcttcgtggaaa
aattaagaacaagtgctgacccctaaaacctttgctcaggacgagcttcc
ttgacctgtgcttctcttttcagccttcctcttagcgagcaacgccacgc
aggcaagttccagggttcccacccttgacacgggctgcacatggccagga
aatgtgtgccacgatgcttgagggcactgcgctcaactgaggtatcagat
agcacatttccatctggatataatttatttactctatcagtactttatat
taaagaaagtgaaccagtgtgaaaactaaaagggagacgtattttggctg
aggagtaacctggaaattattaaagtcaaaagcttctgggtcaaagggca
gcagcttcgtgttattagaataatatgttaatgtttaagtcatgtaacct
tgtagggtctccgaaacacctgcgaggaaaatggttttcacactgttgag
atggtaacgaataggcaagctcactgctgctctggactctactcatgcaa
ctgcattttatgagccagtgaaacatagcctgacatgaatataaaaaaga
cagtaaaacaacaccaccctttctcattgctccattttctctctgcacac
ggctactcccctcccagcgcctctttacgccggctgcccttggttcagcc
gttgctgaggaccgagtccaaggtgccctgagatacggtagaaaacacag
gatccctcccacaatagagttccaattatttgcataaggttggcactgtg
aactatatttctgcctgtgttgaacagtgttgtagaaccctaagctgcat
ctccataagcaatatttctgggtgtcttttttttaacttcacatcattat
cagccttagcactcaaaagtaaatacgcacacatgtgtgtcaagatagga
gacgcctgcgtttttgaatgtcctaacaccaagagcccatctgagatggg
acaaagggcatcttttatcatattgaattgtattacctaacctgaccttt
aagaaggtgaggtccatcagattgggataatttgcatattttagatgcaa
tgtcaactctctgggcactcttgttgtgcacagaaatcagtt
gaattcagatgtgtaattgatttcatgtgtttgctttaggatggggcatg
gacctcgaactagggagcagcacagaggtcacgattggaatccagatcct
tccctcctagagtgaaggcaaccacacagcagcttccccagagcctctgc
ttcctgggcaaatacattctacagtgtctcagtaaggtgagatggaggga
agagttttggctccagcctactgtagtttccctttttaatttatcttggt
atttctaagaaccatgaaaggatgtaagtaattaaagctgaacctttaca
attaaaacacaaccacgtctcaacgactctctgagcatcatgtaccttgt
agttttgcatgaatactccaatctactttttcaggtaggtaattagattt
tatataaggaagaacctgggaggagagcgagagagtgagaatgagagcgt
cttgctaatgatttcagagataatatgtgggctagtagggatttgaatcc
catatttatgattcccaaatctatttttttctgagattctgggtaaaaaa
gatgcattttttttttttttacccagacttacgtaaggacttgctgcaga
tgttagcatggatgtcctatagacatggacctttaggacttattttttta
atttgtaccaaaaatggggacagaagcatatgtacgagacagaacaaatg
gagctggactgttccaagaaatttgagcttaatctattgcagacagacca
ctttccttgaagttctgatcacattgaccatgatttttaggttatttttg
ggaaataaccctgcacccttgtttagctgtatacatattgctgcttccct
gttcagctgttcatgagaaacatgctaactcctggggtcctctgacttct
catcagagccagtccacctgatttcagattttctgtgctgtggctgtctg
tctttcttctcccttgctgacctagtgagatctcataatgagggctatgc
agaatttggtaattaatctctttgctttattttagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40224789_40225934
seq2: B6Ng01-053F06.b_45_1186

seq1  GAATTCTACATTTGAGGCGTTCCTCAGTCCCTTCCCCTGCTTCGTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTGAGGCGTTCCTCAGTCCCTTCCCCTGCTTCGTGGAAA  50

seq1  AATTAAGAACAAGTGCTGACCCCTAAAACCTTTGCTCAGGACGAGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAACAAGTGCTGACCCCTAAAACCTTTGCTCAGGACGAGCTTCC  100

seq1  TTGACCTGTGCTTCTCTTTTCAGCCTTCCTCTTAGCGAGCAACGCCACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGTGCTTCTCTTTTCAGCCTTCCTCTTAGCGAGCAACGCCACGC  150

seq1  AGGCAAGTTCCAGGGTTCCCACCCTTGACACGGGCTGCACATGGCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTTCCAGGGTTCCCACCCTTGACACGGGCTGCACATGGCCAGGA  200

seq1  AATGTGTGCCACGATGCTTGAGGGCACTGCGCTCAACTGAGGTATCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGCCACGATGCTTGAGGGCACTGCGCTCAACTGAGGTATCAGAT  250

seq1  AGCACATTTCCATCTGGATATAATTTATTTACTCTATCAGTACTTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTTCCATCTGGATATAATTTATTTACTCTATCAGTACTTTATAT  300

seq1  TAAAGAAAGTGAACCAGTGTGAAAACTAAAAGGGAGACGTATTTTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGTGAACCAGTGTGAAAACTAAAAGGGAGACGTATTTTGGCTG  350

seq1  AGGAGTAACCTGGAAATTATTAAAGTCAAAAGCTTCTGGGTCAAAGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAACCTGGAAATTATTAAAGTCAAAAGCTTCTGGGTCAAAGGGCA  400

seq1  GCAGCTTCGTGTTATTAGAATAATATGTTAATGTTTAAGTCATGTAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCGTGTTATTAGAATAATATGTTAATGTTTAAGTCATGTAACCT  450

seq1  TGTAGGGTCTCCGAAACACCTGCGAGGAAAATGGTTTTCACACTGTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTCTCCGAAACACCTGCGAGGAAAATGGTTTTCACACTGTTGAG  500

seq1  ATGGTAACGAATAGGCAAGCTCACTGCTGCTCTGGACTCTACTCATGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACGAATAGGCAAGCTCACTGCTGCTCTGGACTCTACTCATGCAA  550

seq1  CTGCATTTTATGAGCCAGTGAAACATAGCCTGACATGAATATAAAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTTATGAGCCAGTGAAACATAGCCTGACATGAATATAAAAAAGA  600

seq1  CAGTAAAACAACACCACCCTTTCTCATTGCTCCATTTTCTCTCTGCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAACAACACCACCCTTTCTCATTGCTCCATTTTCTCTCTGCACAC  650

seq1  GGCTACTCCCCTCCCAGCGCCTCTTTACGCCGGCTGCCCTTGGTTCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTCCCCTCCCAGCGCCTCTTTACGCCGGCTGCCCTTGGTTCAGCC  700

seq1  GTTGCTGAGGACCGAGTCCAAGGTGCCCTGAGATACGGTAGAAAACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGAGGACCGAGTCCAAGGTGCCCTGAGATACGGTAGAAAACACAG  750

seq1  GATCCCTCCCACAATAGAGTTCCAATTA-TTGCATAAGGTTGGCACTGTG  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATCCCTCCCACAATAGAGTTCCAATTATTTGCATAAGGTTGGCACTGTG  800

seq1  AACTATA-TTCTGCCTGTGTTGAACAGTGTTGTAGAACCCTAAGCTGCAT  848
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATTTCTGCCTGTGTTGAACAGTGTTGTAGAACCCTAAGCTGCAT  850

seq1  CTCCATAAGCAATATTTCTGGGTGTCTTTTTTTTAACTTCACATCATTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAAGCAATATTTCTGGGTGTCTTTTTTTTAACTTCACATCATTAT  900

seq1  CAGCCTTAGCACTCAAAAGTAAATACGCACACATGTGTGTCAAGATAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTAGCACTCAAAAGTAAATACGCACACATGTGTGTCAAGATAGGA  950

seq1  GACGCCTGCGTTTCTGAATGTCCTAACACCAAGAGCCCATCTGAAGATGG  998
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GACGCCTGCGTTTTTGAATGTCCTAACACCAAGAGCCCATCTG-AGATGG  999

seq1  GACAAAGGGCATCTTTTATCCATAATTGA--TGTAATTACCTAACCTGAC  1046
      ||||||||||||||||||| ||| |||||  ||| |||||||||||||||
seq2  GACAAAGGGCATCTTTTAT-CAT-ATTGAATTGT-ATTACCTAACCTGAC  1046

seq1  CTTTAGAAAGGTGAGGTCCATCAGATTGTGATAATTTGCATTTATTTTAG  1096
      |||||  ||||||||||||||||||||| |||||||||||  ||||||||
seq2  CTTTAAGAAGGTGAGGTCCATCAGATTGGGATAATTTGCA--TATTTTAG  1094

seq1  ATGCAGATGTCAACTCTCT-GGCACTCTTGTATGTGCACAGAAAATCAGT  1145
      ||||| ||||||||||||| ||||||||||| ||||||||| ||||||||
seq2  ATGCA-ATGTCAACTCTCTGGGCACTCTTGT-TGTGCACAG-AAATCAGT  1141

seq1  T  1146
      |
seq2  T  1142

seq1: chr3_40368184_40369235
seq2: B6Ng01-053F06.g_69_1106 (reverse)

seq1  TGTCTTAAAAATAAAAGCAAAGAG-TTATTGACCAAACTCTTGCATAGCC  49
      |||||  ||||| ||||||||||| ||| | |||||| || |||||||||
seq2  TGTCT--AAAAT-AAAGCAAAGAGATTAATTACCAAATTC-TGCATAGCC  46

seq1  CCCACTGATGAGATCTCACTAGGGTCAGCAAGGGGATGAAGAAAAGACAG  99
      | || | |||||||||||||| ||||||||||||   |||| ||||||||
seq2  CTCA-TTATGAGATCTCACTA-GGTCAGCAAGGG--AGAAG-AAAGACAG  91

seq1  ACAGACACAGACACAGAAAAATCTGAAATCAGGTGGACTGGGCTCTGATG  149
      |||| ||||| ||||| |||||||||||||||||||||| ||||||||| 
seq2  ACAGCCACAG-CACAG-AAAATCTGAAATCAGGTGGACT-GGCTCTGAT-  137

seq1  GAGAAGTCAGAGGACCCCAGGAGTTCAGCATGTTTCTCATGAACAGCTGA  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGAAGTCAGAGGACCCCAGGAGTT-AGCATGTTTCTCATGAACAGCTGA  186

seq1  ACAGGGAAGCAGCAATACTGTATACAGCTAAACAAGGGTGCAGGGTTATT  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGCAGCAATA-TGTATACAGCTAAACAAGGGTGCAGGGTTATT  235

seq1  TCCCAAAAATAACCTAAAAATCATGGTCAATGTGATCAGAACTTCAAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAATAACCTAAAAATCATGGTCAATGTGATCAGAACTTCAAGGA  285

seq1  AAGTGGTCTGTCTGCAATAGATTAAGCTCAAATTTCTTGGAACAGTCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTCTGTCTGCAATAGATTAAGCTCAAATTTCTTGGAACAGTCCAG  335

seq1  CTCCATTTGTTCTGTCTCGTACATATGCTTCTGTCCCCATTTTTGGTACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTGTTCTGTCTCGTACATATGCTTCTGTCCCCATTTTTGGTACA  385

seq1  AATTAAAAAAATAAGTCCTAAAGGTCCATGTCTATAGGACATCCATGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAAATAAGTCCTAAAGGTCCATGTCTATAGGACATCCATGCTA  435

seq1  ACATCTGCAGCAAGTCCTTACGTAAGTCTGGGTAAAAAAAAAAAAAATGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCAGCAAGTCCTTACGTAAGTCTGGGTAAAAAAAAAAAAAATGC  485

seq1  ATCTTTTTTACCCAGAATCTCAGAAAAAAATAGATTTGGGAATCATAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTTACCCAGAATCTCAGAAAAAAATAGATTTGGGAATCATAAAT  535

seq1  ATGGGATTCAAATCCCTACTAGCCCACATATTATCTCTGAAATCATTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTCAAATCCCTACTAGCCCACATATTATCTCTGAAATCATTAGC  585

seq1  AAGACGCTCTCATTCTCACTCTCTCGCTCTCCTCCCAGGTTCTTCCTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGCTCTCATTCTCACTCTCTCGCTCTCCTCCCAGGTTCTTCCTTAT  635

seq1  ATAAAATCTAATTACCTACCTGAAAAAGTAGATTGGAGTATTCATGCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCTAATTACCTACCTGAAAAAGTAGATTGGAGTATTCATGCAAA  685

seq1  ACTACAAGGTACATGATGCTCAGAGAGTCGTTGAGACGTGGTTGTGTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAGGTACATGATGCTCAGAGAGTCGTTGAGACGTGGTTGTGTTTT  735

seq1  AATTGTAAAGGTTCAGCTTTAATTACTTACATCCTTTCATGGTTCTTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAAGGTTCAGCTTTAATTACTTACATCCTTTCATGGTTCTTAGA  785

seq1  AATACCAAGATAAATTAAAAAGGGAAACTACAGTAGGCTGGAGCCAAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAGATAAATTAAAAAGGGAAACTACAGTAGGCTGGAGCCAAAAC  835

seq1  TCTTCCCTCCATCTCACCTTACTGAGACACTGTAGAATGTATTTGCCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCCATCTCACCTTACTGAGACACTGTAGAATGTATTTGCCCAG  885

seq1  GAAGCAGAGGCTCTGGGGAAGCTGCTGTGTGGTTGCCTTCACTCTAGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGCTCTGGGGAAGCTGCTGTGTGGTTGCCTTCACTCTAGGAG  935

seq1  GGAAGGATCTGGATTCCAATCGTGACCTCTGTGCTGCTCCCTAGTTCGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATCTGGATTCCAATCGTGACCTCTGTGCTGCTCCCTAGTTCGAG  985

seq1  GTCCATGCCCCATCCTAAAGCAAACACATGAAATCAATTACACATCTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGCCCCATCCTAAAGCAAACACATGAAATCAATTACACATCTGAA  1035

seq1  TTC  1052
      |||
seq2  TTC  1038