BAC Information

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BAC

Clone NameB6Ng01-053H01
Chromosome3 (Build37)18 (Build37)
Map Location 79,442,413 - 79,442,93152,845,804 - 52,846,693
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H01.bB6Ng01-053H01.g
ACCDH876485DH876486
length1,033889
definitionDH876485|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H01, 5' end.DH876486|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,442,413 - 79,442,931)(52,845,804 - 52,846,693)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttctgttattccagatg
aatttgcaaatttgctccttctaattcgttgaaagaattgagttggaatt
ttaatggggattgcattgaatctgtagattgcttttggcaagatagccat
ttttacaatgttggtcctgccaatccatgagcatggggagatcttccatc
ttctgagatcttctttaatttcttcttcagggactggaagttttatcata
cagatctttcacttccttcgttagagtcacgccgagatatttatattatt
tgtggctattgagaatgttgttgttcctaatttcttctcagcctgtttat
ccttggtagaaaaaggccattgacttgtttgag
gaattcactgaccatgccaagtctgaatagtttctgatggatgaaacagt
tcattattcctcaaaagctttatagcattcctccaaaagacctttaaact
tatttgtctatgtacaggaatgcctgctgtgtgggaagagtctccagtgt
aaacaacgaaagcaatttaggatttatatttttaaaaacttcagaccata
atcttcctctatgactaaagttctcttttattccaaattttaaaactact
gtttgcttttagtatagataaaaatacaagaacaagtgtgagccccattc
ataatccatgttatccttgaaggggctgtgtgtgaggaaaggcttttcct
tgcccctttcccttacaattcatggcatgtctgacttcttgatttttggc
tcttctctggactatgaaaataagtaagtagctgtgtactaagcagagat
caagtatcctttgaaagggttatttggcttttacatgatctaactgacag
aaaatgaaaataaaaataaatcatttaacttgttccaaatgacagtgtgt
gacaggagagaatcacatatgcctatatatttattcatctagttctgttt
tctgcatcaacccttagttgtcatcagacaagccaatagccactagtaga
agaggtagttgacctctgtcttctttatcttctggtcgtttggctctagg
tctttcttcaaatcttaatcccatcatcctgtcaatctcatatgcgagtc
atgagaaacactgaagggacattggttattattttatgtgcatgacccat
tgacataaaaaagcccttgatttttcaagacatgacactgagataatttc
ccatatgctcatgtttctgtacatcttacaaattacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79442413_79442931
seq2: B6Ng01-053H01.b_563_1075 (reverse)

seq1  CTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGA  50
      |||||||||||||||||||||| |||  || ||| |||||||||||||| 
seq2  CTCAAACAAGTCAATGGCCTTTTTCT--ACCAAGGATAAACAGGCTGAG-  47

seq1  AAGAAATTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATATAAAA  100
      |||||||||||  ||||||| | ||||||||||||||||||||||| |||
seq2  AAGAAATTAGG--AACAACAACATTCTCAATAGCCACAAATAATAT-AAA  94

seq1  TATCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGAT-AAAA  143

seq1  CTTCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAG  200
      |||| ||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CTTCCAGTCCCTGAAG-AAGAAATTAAAGAAGATCTCAGAAGATGG-AAG  191

seq1  ATCT-CCCATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCTAT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCTAT  241

seq1  CTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAA  291

seq1  CTCAATTC-TTCAACGAATTAGAAGGAGC-AATTTGCAAATTCATCTGGA  347
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CTCAATTCTTTCAACGAATTAGAAGGAGCAAATTTGCAAATTCATCTGGA  341

seq1  ATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACC  397
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACC  391

seq1  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGT  441

seq1  GATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGA  491

seq1  ATAGAATTGAAGACCCAGAAAT  519
      ||||||||||||||||||||||
seq2  ATAGAATTGAAGACCCAGAAAT  513

seq1: chr18_52845804_52846693
seq2: B6Ng01-053H01.g_69_957

seq1  GAATTCACTGACCATGCCAAGTCTGAATAGTTTCTGATGGATGAAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCATGCCAAGTCTGAATAGTTTCTGATGGATGAAACAGT  50

seq1  TCATTATTCCTCAAAAGCTTTATAGCATTCCTCCAAAAGACCTTTAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCCTCAAAAGCTTTATAGCATTCCTCCAAAAGACCTTTAAACT  100

seq1  TATTTGTCTATGTACAGGAATGCCTGCTGTGTGGGAAGAGTCTCCAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCTATGTACAGGAATGCCTGCTGTGTGGGAAGAGTCTCCAGTGT  150

seq1  AAACAACGAAAGCAATTTAGGATTTATATTTTTAAAAACTTCAGACCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACGAAAGCAATTTAGGATTTATATTTTTAAAAACTTCAGACCATA  200

seq1  ATCTTCCTCTATGACTAAAGTTCTCTTTTATTCCAAATTTTAAAACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCTATGACTAAAGTTCTCTTTTATTCCAAATTTTAAAACTACT  250

seq1  GTTTGCTTTTAGTATAGATAAAAATACAAGAACAAGTGTGAGCCCCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTTAGTATAGATAAAAATACAAGAACAAGTGTGAGCCCCATTC  300

seq1  ATAATCCATGTTATCCTTGAAGGGGCTGTGTGTGAGGAAAGGCTTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCATGTTATCCTTGAAGGGGCTGTGTGTGAGGAAAGGCTTTTCCT  350

seq1  TGCCCCTTTCCCTTACAATTCATGGCATGTCTGACTTCTTGATTTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTTCCCTTACAATTCATGGCATGTCTGACTTCTTGATTTTTGGC  400

seq1  TCTTCTCTGGACTATGAAAATAAGTAAGTAGCTGTGTACTAAGCAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGGACTATGAAAATAAGTAAGTAGCTGTGTACTAAGCAGAGAT  450

seq1  CAAGTATCCTTTGAAAGGGTTATTTGGCTTTTACATGATCTAACTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCCTTTGAAAGGGTTATTTGGCTTTTACATGATCTAACTGACAG  500

seq1  AAAATGAAAATAAAAATAAATCATTTAACTTGTTCCAAATGACAGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATAAAAATAAATCATTTAACTTGTTCCAAATGACAGTGTGT  550

seq1  GACAGGAGAGAATCACATATGCCTATATATTTATTCATCTAGTTCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGAGAATCACATATGCCTATATATTTATTCATCTAGTTCTGTTT  600

seq1  TCTGCATCAACCCTTAGTTGTCATCAGACAAGCCAATAGCCACTAGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCAACCCTTAGTTGTCATCAGACAAGCCAATAGCCACTAGTAGA  650

seq1  AGAGGTAGTTGACCTCTGTCTTCTTTATCTTCTGGTCGTTTGGCTCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGTTGACCTCTGTCTTCTTTATCTTCTGGTCGTTTGGCTCTAGG  700

seq1  TCTTTCTTCAAATCTTAATCCCATCATCCTGTCAATCTCATATGCGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCAAATCTTAATCCCATCATCCTGTCAATCTCATATGCGAGTC  750

seq1  ATGAGAAACACTGAA-GGACATTTGGTATTATATTTATGTGCATGACCAA  799
      ||||||||||||||| ||||||| | |||||| ||||||||||||||| |
seq2  ATGAGAAACACTGAAGGGACATTGGTTATTAT-TTTATGTGCATGACCCA  799

seq1  TTGACATAATAAAGCCCCTTGA-TTTTCCAGACATGACACTGAGATAATT  848
      ||||||||| |||| ||||||| ||||| |||||||||||||||||||||
seq2  TTGACATAAAAAAG-CCCTTGATTTTTCAAGACATGACACTGAGATAATT  848

seq1  TCCCATATGTCTCATGTTTCTGTACATCTTACAAATAACAGA  890
      ||||||||| |||||||||||||||||||||||||| |||||
seq2  TCCCATATG-CTCATGTTTCTGTACATCTTACAAATTACAGA  889