BAC Information

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BAC

Clone NameB6Ng01-053K24
Chromosome3 (Build37)
Map Location 82,881,143 - 82,882,260
singlet/doubletsinglet
Overlap genenone
Upstream geneGucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
Downstream geneEG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053K24.b
ACCDH876665
length1,101
definitionDH876665|Mus musculus domesticus DNA, BAC clone: B6Ng01-053K24, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggcagtctgcatagagaagaaacaaccaactccacaaaggtgt
cctctgccctccaaacacaaactgcattgctcatgcatgcgtggaacaat
aaaaatagtaaataaatatttttcagacgtcccataactgactgtggtga
tggtagcataactctgtgaactaaaatctacagaattgtatatcggaaga
gggtgggctgaactctatgtgaatatctcaataatgttatattttaatta
ttttatggtttttttcacacatgtatataataaaattttagttgtttttt
ttttctccttctcattacttctcatacgatccccctctttcttatcaaag
atcccctcgctctatctttgtggataaaccagtgcatttaactaggcatg
gttatggaagggaagctgtctactggggcagaggtagctgagcagtggct
gcactgctgaaggaattctcactccctgtcgtagagtcctaacatcagtc
atggaggggggcacacaagaccttcccccagtcttacttagataccttgg
ggcccaatttcatgtaggtcatgtggagataccacagccaaaaggcccta
atttaacaaacaaactaaaagtatttttgaggaaaaaaagaaaaaggtct
attttattttaaacaaccttacagagcaggtatggtcagtgtgatattta
cccaaccaaaagtattaccaaacattggataatctaaaatatattataaa
attttaagaaaatcctcagatagctttcctgttttctgagctgagctggt
tttgtttgtttggttgtttgtttgactgacatcacattgctggatatttg
cccaattgattttcctatcatcagacatcatgatgtcccatccagcccct
tgggtgaaatgggattttacctctcattcattacagaacagacctgttta
gagaatcactgattgaaaagagtgtaaatccagagaattctggtgcagtt
agttgcactgtactggtaagtggagatgcttgtgcacgctggatctcaat
gttgaactgtcttagtctctgggaaccatacaggatcaaggcattgagtt
t
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82881143_82882260
seq2: B6Ng01-053K24.b_42_1142 (reverse)

seq1  AAACATCAATTGCCTTGATCCTGTATTGTTTCCAAAAGACAATAGCTGAT  50
      |||| |||| ||||||||||||||| || |||| | |||| | ||    |
seq2  AAAC-TCAA-TGCCTTGATCCTGTA-TGGTTCCCAGAGACTA-AGACAGT  46

seq1  GCACAATTGTAGAGTCAACATGCAC-AGCCACACCATTTACCATGTCCTG  99
       ||  |||| |||  || | ||||| |||  | ||| |||||| || | |
seq2  TCAACATTG-AGATCCAGCGTGCACAAGCATCTCCACTTACCA-GTACAG  94

seq1  TGCAACCAAACCGCACCAGAATCTTCTTGAATTTACACTCCTTTCATTCT  149
      ||||| | ||| ||||||||||  || || |||||||||| ||||| || 
seq2  TGCAA-CTAACTGCACCAGAATTCTC-TGGATTTACACTCTTTTCAATCA  142

seq1  GTAATTTCTCTGAAACAGGTTCTGTTCTGTAAATGAATTGAGAGGTAAAA  199
      || | |||||| ||||||| |||||||||| |||||| |||||||| |||
seq2  GTGA-TTCTCT-AAACAGG-TCTGTTCTGT-AATGAA-TGAGAGGT-AAA  186

seq1  ATCCCATTTCACCCAAGGGGCTGGATGGGACATCCTTGATGTCTGATGAT  249
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  ATCCCATTTCACCCAAGGGGCTGGATGGGACAT-CATGATGTCTGATGAT  235

seq1  AGGAAAATCAATTGGGCAAATATCCAGCAATGTGATGACATTACAAACAA  299
      ||||||||||||||||||||||||||||||||||||| || | |||||||
seq2  AGGAAAATCAATTGGGCAAATATCCAGCAATGTGATGTCAGT-CAAACAA  284

seq1  ACAAACAAACAAACAAAAACCAGCTCAGCTCAGAAAACAGGAAAGCTTAT  349
      |||| ||||||||| ||||||||||||||||||||||||||||||| |||
seq2  ACAACCAAACAAAC-AAAACCAGCTCAGCTCAGAAAACAGGAAAGC-TAT  332

seq1  TTGAGGATTTTCTTAAAATTTTATAATTTATTTTTAGATTATCCAATGTT  399
       |||||||||||||||||||||||||| || |||||||||||||||||||
seq2  CTGAGGATTTTCTTAAAATTTTATAATATA-TTTTAGATTATCCAATGTT  381

seq1  TGGTAATACTTTTGGTT-GGCAAATATCACACTGACCATACCTGCTCTGT  448
      ||||||||||||||||| || |||||||||||||||||||||||||||||
seq2  TGGTAATACTTTTGGTTGGGTAAATATCACACTGACCATACCTGCTCTGT  431

seq1  AAGGTTGTTTAAAATAAAATAGACCTTTTTCTTTTTTTCCTCAAAAATAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGTTTAAAATAAAATAGACCTTTTTCTTTTTTTCCTCAAAAATAC  481

seq1  TTTTAGTTTGTTTGTTAAATTAGGGCCTTTTGGCTGTGGTATCTCCACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTGTTTGTTAAATTAGGGCCTTTTGGCTGTGGTATCTCCACAT  531

seq1  GACCTACATGAAATTGGGCCCCAAGGTATCTAAGTAAGACTGGGGGAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACATGAAATTGGGCCCCAAGGTATCTAAGTAAGACTGGGGGAAGG  581

seq1  TCTTGTGTGCCCCCCTCCATGACTGATGTTAGGACTCTACGACAGGGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTGCCCCCCTCCATGACTGATGTTAGGACTCTACGACAGGGAGT  631

seq1  GAGAATTCCTTCAGCAGTGCAGCCACTGCTCAGCTACCTCTGCCCCAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCCTTCAGCAGTGCAGCCACTGCTCAGCTACCTCTGCCCCAGTA  681

seq1  GACAGCTTCCCTTCCATAACCATGCCTAGTTAAATGCACTGGTTTATCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTCCCTTCCATAACCATGCCTAGTTAAATGCACTGGTTTATCCA  731

seq1  CAAAGATAGAGCGAGGGGATCTTTGATAAGAAAGAGGGGGATCGTATGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAGAGCGAGGGGATCTTTGATAAGAAAGAGGGGGATCGTATGAG  781

seq1  AAGTAATGAGAAGGAGAAAAAAAAAACAACTAAAATTTTATTATATACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGAGAAGGAGAAAAAAAAAACAACTAAAATTTTATTATATACAT  831

seq1  GTGTGAAAAAAACCATAAAATAATTAAAATATAACATTATTGAGATATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAAAAACCATAAAATAATTAAAATATAACATTATTGAGATATTC  881

seq1  ACATAGAGTTCAGCCCACCCTCTTCCGATATACAATTCTGTAGATTTTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTTCAGCCCACCCTCTTCCGATATACAATTCTGTAGATTTTAG  931

seq1  TTCACAGAGTTATGCTACCATCACCACAGTCAGTTATGGGACGTCTGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGTTATGCTACCATCACCACAGTCAGTTATGGGACGTCTGAAA  981

seq1  AATATTTATTTACTATTTTTATTGTTCCACGCATGCATGAGCACTGCAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATATTTATTTACTATTTTTATTGTTCCACGCATGCATGAGCAATGCAGT  1031

seq1  TTGTGTTTGGAGGGCAGAGGACACCTTTGTGGAGTTGGTTCTTTCTTCTC  1098
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGTGTTTGGAGGGCAGAGGACACCTTTGTGGAGTTGGTTGTTTCTTCTC  1081

seq1  TATGCAGACTGCCAGAATTC  1118
      ||||||||||||||||||||
seq2  TATGCAGACTGCCAGAATTC  1101