BAC Information

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BAC

Clone NameB6Ng01-053N08
Chromosome3 (Build37)
Map Location 113,175,582 - 113,332,245
singlet/doubletdoublet
Overlap geneLOC100043207, Amy1, Rnpc3
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688
Downstream geneCol11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053N08.bB6Ng01-053N08.g
ACCDH876758DH876759
length961743
definitionDH876758|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N08, 5' end.DH876759|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,175,582 - 113,176,276)(113,331,507 - 113,332,245)
sequence
gaattctctcagtttggtttctttattgattcaatttacaatttcatgtc
ttgaacggttttatttatttccatacactttgtgtatttcttgattttgt
taagggattaatcatttcctctttaaagatctctatcatatttataaggt
tattatgggagatttttatttcttttttaattcttttcagatttgttgta
tttatatacattccaaatattgccacccttccaagtctccctcaagagtt
cttcaacccttccacccttcccttggcccctgagagggtacttcccacga
ccctttcacccttccccctccctggggcatcaagtctctactggagaatt
aggtgaatcttttactactgaaagcagacaaattcctctgttacatatgt
gccaggggccaggtaccagcccatgtatgctctttggttggtagcttagt
ttctgagagctcaagaggtctggaataattaataccattgttattcctgt
ggggttgccatcccccttcaacttcttcaatccttcccataactctgcca
atggggtctataacctcagtccaatggctgtaactgtctgcatctgtttt
atgcagctgctggttgaacctttcagagggcagtcatgctaggctcctat
ctgcaaacacaacatgtcatcagtaattgtatcaggatttcagtcccacc
cttgggatggatcccgagttgagctagtcactaatggcctctacatcacc
cctggacatataaccaaaagatactccaccataccctaagtcaaggtctt
tttttttttcttcacttatgttgaaatactcacggcctgctgtggtagga
tagctgggatccagtgatggctctgtgttgcctgttttcttgcctgttct
gctggtgtgttcatatgaaaggcctgctgatgttgaaggctggatatttg
gatgagttggg
gaattcaaatgagaaaattagacttattactgaaattatagaaacaaagc
aaaaagagacaatgcaccttgaggggtgatttcactgttagtaaatgatt
ttaaattttatcttgtatagactgaaaagacttttgagtgagatgaaaaa
gggtattccatatgtataaatttttcattttaataatgaatcaagcttct
ccatgcatcacttttgtgtggacatgaaactcacagtctagaaaggctat
gctgagggttttttttttttttaaggttttatttatttattatatgtaag
tacagtgtggctatcttcagatctcattatgggtggttgtgagccaactt
gtggttgctgggatttgaactcaggacctctggaagagcagtcagttctc
tcacccgctgagccatctcaccagccctaaatgttttaagagtgatcttt
tttggaaagaggagatgctttaagatttattatacttttaattatgttgt
acatttgtgtatattttgggggtttgtaggagtacaggtggttatgaagt
tgctgaacatggacattgggacatcttcccaatgatgcccttgggtaaga
gccctactgactttttaccactgtcccatctctctggtccccaggagtag
agagttttttttaaaaattgtggtctgttgaactctttgctattataaaa
tatatttgtgtttgtccttattcatttatgttgagagggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113175582_113176276
seq2: B6Ng01-053N08.b_42_736

seq1  GAATTCTCTCAGTTTGGTTTCTTTATTGATTCAATTTACAATTTCATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGTTTGGTTTCTTTATTGATTCAATTTACAATTTCATGTC  50

seq1  TTGAACGGTTTTATTTATTTCCATACACTTTGTGTATTTCTTGATTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACGGTTTTATTTATTTCCATACACTTTGTGTATTTCTTGATTTTGT  100

seq1  TAAGGGATTAATCATTTCCTCTTTAAAGATCTCTATCATATTTATAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGATTAATCATTTCCTCTTTAAAGATCTCTATCATATTTATAAGGT  150

seq1  TATTATGGGAGATTTTTATTTCTTTTTTAATTCTTTTCAGATTTGTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGGAGATTTTTATTTCTTTTTTAATTCTTTTCAGATTTGTTGTA  200

seq1  TTTATATACATTCCAAATATTGCCACCCTTCCAAGTCTCCCTCAAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACATTCCAAATATTGCCACCCTTCCAAGTCTCCCTCAAGAGTT  250

seq1  CTTCAACCCTTCCACCCTTCCCTTGGCCCCTGAGAGGGTACTTCCCACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCCTTCCACCCTTCCCTTGGCCCCTGAGAGGGTACTTCCCACGA  300

seq1  CCCTTTCACCCTTCCCCCTCCCTGGGGCATCAAGTCTCTACTGGAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCACCCTTCCCCCTCCCTGGGGCATCAAGTCTCTACTGGAGAATT  350

seq1  AGGTGAATCTTTTACTACTGAAAGCAGACAAATTCCTCTGTTACATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATCTTTTACTACTGAAAGCAGACAAATTCCTCTGTTACATATGT  400

seq1  GCCAGGGGCCAGGTACCAGCCCATGTATGCTCTTTGGTTGGTAGCTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGCCAGGTACCAGCCCATGTATGCTCTTTGGTTGGTAGCTTAGT  450

seq1  TTCTGAGAGCTCAAGAGGTCTGGAATAATTAATACCATTGTTATTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAGCTCAAGAGGTCTGGAATAATTAATACCATTGTTATTCCTGT  500

seq1  GGGGTTGCCATCCCCCTTCAACTTCTTCAATCCTTCCCATAACTCTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGCCATCCCCCTTCAACTTCTTCAATCCTTCCCATAACTCTGCCA  550

seq1  ATGGGGTCTATAACCTCAGTCCAATGGCTGTAACTGTCTGCATCTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCTATAACCTCAGTCCAATGGCTGTAACTGTCTGCATCTGTTTT  600

seq1  ATGCAGCTGCTGGTTGAACCTTTCAGAGGGCAGTCATGCTAGGCTCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTGCTGGTTGAACCTTTCAGAGGGCAGTCATGCTAGGCTCCTAT  650

seq1  CTGCAAACACAACATGTCATCAGTAATTGTATCAGGATTTCAGTC  695
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACACAACATGTCATCAGTAATTGTATCAGGATTTCAGTC  695

seq1: chr3_113331507_113332245
seq2: B6Ng01-053N08.g_69_811 (reverse)

seq1  CTTTGCCTCTCAACATAAATGAATAAGGACAAACAC-AATATATTTTATA  49
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTCCCTCTCAACATAAATGAATAAGGACAAACACAAATATATTTTATA  50

seq1  ATAGCAAAGAGTTCAACAGACCACAATTTTT-AAAAAAACTCTCTACTCC  98
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAGCAAAGAGTTCAACAGACCACAATTTTTAAAAAAAACTCTCTACTCC  100

seq1  TGGGGACCAGAGAGATGGGACAGTGGT-AAAAGTCAGTAGGGCTCTTA-C  146
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGGGGACCAGAGAGATGGGACAGTGGTAAAAAGTCAGTAGGGCTCTTACC  150

seq1  CAAGGGCATCATTGGGAAGATGTCCCAATGTCCATGTTCAGCAACTTCAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCATCATTGGGAAGATGTCCCAATGTCCATGTTCAGCAACTTCAT  200

seq1  AACCACCTGTACTCCTACAAACCCCCAAAATATACACAAATGTACAACAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGTACTCCTACAAACCCCCAAAATATACACAAATGTACAACAT  250

seq1  AATTAAAAGTATAATAAATCTTAAAGCATCTCCTCTTTCCAAAAAAGATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGTATAATAAATCTTAAAGCATCTCCTCTTTCCAAAAAAGATC  300

seq1  ACTCTTAAAACATTTAGGGCTGGTGAGATGGCTCAGCGGGTGAGAGAACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAAACATTTAGGGCTGGTGAGATGGCTCAGCGGGTGAGAGAACT  350

seq1  GACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACAAGTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACAAGTTGG  400

seq1  CTCACAACCACCCATAATGAGATCTGAAGATAGCCACACTGTACTTACAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCACCCATAATGAGATCTGAAGATAGCCACACTGTACTTACAT  450

seq1  ATAATAAATAAATAAAACCTTAAAAAAAAAAAAAACCCTCAGCATAGCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAAATAAAACCTTAAAAAAAAAAAAAACCCTCAGCATAGCCT  500

seq1  TTCTAGACTGTGAGTTTCATGTCCACACAAAAGTGATGCATGGAGAAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACTGTGAGTTTCATGTCCACACAAAAGTGATGCATGGAGAAGCT  550

seq1  TGATTCATTATTAAAATGAAAAATTTATACATATGGAATACCCTTTTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATTATTAAAATGAAAAATTTATACATATGGAATACCCTTTTTCA  600

seq1  TCTCACTCAAAAGTCTTTTCAGTCTATACAAGATAAAATTTAAAATCATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCAAAAGTCTTTTCAGTCTATACAAGATAAAATTTAAAATCATT  650

seq1  TACTAACAGTGAAATCACCCCTCAAGGTGCATTGTCTCTTTTTGCTTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACAGTGAAATCACCCCTCAAGGTGCATTGTCTCTTTTTGCTTTGT  700

seq1  TTCTATAATTTCAGTAATAAGTCTAATTTTCTCATTTGAATTC  739
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAATTTCAGTAATAAGTCTAATTTTCTCATTTGAATTC  743