BAC Information

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BAC

Clone NameB6Ng01-054E04
Chromosome3 (Build37)
Map Location 151,699,698 - 151,849,721
singlet/doubletdoublet
Overlap geneLOC676548, Gipc2, Dnajb4
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597
Downstream geneFubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054E04.bB6Ng01-054E04.g
ACCDH877054DH877055
length8001,112
definitionDH877054|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E04, 5' end.DH877055|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,699,698 - 151,700,498)(151,848,599 - 151,849,721)
sequence
gaattctaggaaaacacacccaaacaggtgatggaattgaacaaaaccat
ccaagaactaaaaatggaagtagaaacaataaagaaaacccaaaggtaga
caactctggagatagaaaccctaggaaagaaatcaggaaccatagatgcg
agcatcagcatcagaatacaagagatggaagagagaatctcagatgcaga
agattccatagaaatgctctactgtttaaaggcagcgtcttctaggtcac
tgaactttcccagattccttcggttaggtcacatgaacttaaacctgctg
agcacttcttaataattatgtccatttagacttgaactttgtacaaggag
ataagaatggatcgatttgcattcttctacatgataaccgccagttgtgc
cagcaccagttgttgaaagtgctgtcttttttccactggatggttttagc
tcccttgtcaaagatcaagtgaccataccatgtggggattcatttctggg
tcttcaattctattccattgatctaccaatggcactgtaccagtaccatg
cagttcttatgacaattactctgtattacatcttaatgtcaggcatggtg
attctaccagaggttcttttattgttgaagataggttttgctatcctagg
tttttgtatttttccagatgaatttgcaaattgccctttctatctcagtg
aagaattgagatgggatttggatggggattgcattgaataagcggattgc
tttcggacagagatgagcatgctagatctctccatcttgcgggatattct

gaattctgtgggaccctcccgtctcaaacaagaccctcccattattcatg
aacttaaagtatcgcttgaagaaatatatagtggctgcaccaaacggatg
aagatttctcgaaaaagattaaatcctgacggaaggagttacagatctga
ggacaaaattctcaccattgagatcaaaaaagggtggaaagaaggcacca
aaatcacttttccgagggaaggcgatgaaacaccaaatagtatcccagca
gacattgtttttgttattaaagacaaagaacatcccaagtttaaaagaga
cggatcaaatatagtttatactgctaaaattagtttacgggaggtaagtc
agtaagtcaaccctgagactctaagacggagagatgactgctgctgattg
actagggggctgtctgggcagcgctggcttttatccaatgctctgcagac
ttattcctcatggtaactctctaggaagtggtgctattatagctctcttc
tggatgacatcatagtttctaaatttatttactgatgttaactatttaaa
tgtcggttttcaagtacaagtttggttagctactttatgggcagtgttag
gttaactctagttataggttgtggtctgtgagatccgcattggtaaccca
ccactgtagtccattaatacatttgttctgaagtgattggagtacaattt
atagaacaagcattagaacataacaagtatataattatacatagtgcaca
ataccaccccttaatatagttcttgagtccttatttgcactacttcttgg
atggggccatgtccctgtttaaatggctcagtgtatccctaccaactaat
attccaaacagtttaaaagatagaaatctggcttctatctccaagtacat
tttctcttccctgaatttgctgtattactttgcttagttctctgtgtcag
agctcactgtatggttccccatgtggttcacaggaactgtactgtgccca
gtagaccgagtcttctgaaaataggttttgttcctgtttagttccgtcct
gttctaaagtctcctgttctcagatagatttctgcaccctgacttgtata
gctttgaacgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_151699698_151700498
seq2: B6Ng01-054E04.b_44_843

seq1  GAATTCTAGGAAAACACACCCAAACAGGTGATGGAATTGAACAAAACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAAACACACCCAAACAGGTGATGGAATTGAACAAAACCAT  50

seq1  CCAAGAACTAAAAATGGAAGTAGAAACAATAAAGAAAACCCAAAGGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAACTAAAAATGGAAGTAGAAACAATAAAGAAAACCCAAAGGTAGA  100

seq1  CAACTCTGGAGATAGAAACCCTAGGAAAGAAATCAGGAACCATAGATGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGGAGATAGAAACCCTAGGAAAGAAATCAGGAACCATAGATGCG  150

seq1  AGCATCAGCATCAGAATACAAGAGATGGAAGAGAGAATCTCAGATGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGCATCAGAATACAAGAGATGGAAGAGAGAATCTCAGATGCAGA  200

seq1  AGATTCCATAGAAATGCTCTACTGTTTAAAGGCAGCGTCTTCTAGGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCATAGAAATGCTCTACTGTTTAAAGGCAGCGTCTTCTAGGTCAC  250

seq1  TGAACTTTCCCAGATTCCTTCGGTTAGGTCACATGAACTTAAACCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCCCAGATTCCTTCGGTTAGGTCACATGAACTTAAACCTGCTG  300

seq1  AGCACTTCTTAATAATTATGTCCATTTAGACTTGAACTTTGTACAAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCTTAATAATTATGTCCATTTAGACTTGAACTTTGTACAAGGAG  350

seq1  ATAAGAATGGATCGATTTGCATTCTTCTACATGATAACCGCCAGTTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATGGATCGATTTGCATTCTTCTACATGATAACCGCCAGTTGTGC  400

seq1  CAGCACCAGTTGTTGAAAGTGCTGTCTTTTTTCCACTGGATGGTTTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCAGTTGTTGAAAGTGCTGTCTTTTTTCCACTGGATGGTTTTAGC  450

seq1  TCCCTTGTCAAAGATCAAGTGACCATACCATGTGGGGATTCATTTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTCAAAGATCAAGTGACCATACCATGTGGGGATTCATTTCTGGG  500

seq1  TCTTCAATTCTATTCCATTGATCTACCAATGTCACTGTACCAGTACCATG  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTTCAATTCTATTCCATTGATCTACCAATGGCACTGTACCAGTACCATG  550

seq1  CAGTTCTTATCACAATTACTCTGTAGTACATCTTAATGTCAGGCATGGTG  600
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  CAGTTCTTATGACAATTACTCTGTATTACATCTTAATGTCAGGCATGGTG  600

seq1  ATTCTACCAGAGGTTCTTTTATTGTTGAAAATAGTTTTTGCTATCCTAGG  650
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  ATTCTACCAGAGGTTCTTTTATTGTTGAAGATAGGTTTTGCTATCCTAGG  650

seq1  TTTTTTTATTTTTCCAGATGAATTTGCAAATTGCCCTTTCTATCTCAGTG  700
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTATTTTTCCAGATGAATTTGCAAATTGCCCTTTCTATCTCAGTG  700

seq1  AAGAATTGAGTTGGGATTTTGATGGGGATTGCATTGAATATGTGGATTGC  750
      |||||||||| |||||||| |||||||||||||||||||| | |||||||
seq2  AAGAATTGAGATGGGATTTGGATGGGGATTGCATTGAATAAGCGGATTGC  750

seq1  TTTCGGCCAATCCATGAGCATGGGAGATCTTTCCATCTTCTGGGATATTC  800
      |||||| | |   |||||||||  |||||| ||||||||  |||||||||
seq2  TTTCGGAC-AGAGATGAGCATGCTAGATCTCTCCATCTTGCGGGATATTC  799

seq1  T  801
      |
seq2  T  800

seq1: chr3_151848599_151849721
seq2: B6Ng01-054E04.g_64_1175 (reverse)

seq1  GACGTTCAAAGCTATCATAGTCAGGGTGCAGAAAACTAACTGGAGAAACA  50
      |||||||||||||||   |||||||||||||||| ||| || ||| ||||
seq2  GACGTTCAAAGCTATACAAGTCAGGGTGCAGAAATCTATCT-GAG-AACA  48

seq1  GGAGGACTTTAGAACAGGACGGAACTAAACAGGAACAAAACCTATTTTCC  100
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGA-GACTTTAGAACAGGACGGAACTAAACAGGAACAAAACCTATTTT-C  96

seq1  AGAAGACCTTGGGGTCTACTGGGCACAGTACAGTTCCTGTTGAACCACAT  150
      |||||||     ||||||||||||||||||||||||||| ||||||||||
seq2  AGAAGAC---TCGGTCTACTGGGCACAGTACAGTTCCTG-TGAACCACAT  142

seq1  GGGGAACCATACAGTGGAGCTCTGACACAGAGAAACTAAGCAAAGTAATA  200
      ||||||||||||||| |||||||||||||||| |||||||||||||||| 
seq2  GGGGAACCATACAGT-GAGCTCTGACACAGAG-AACTAAGCAAAGTAAT-  189

seq1  ACAGCAAATTCAGGGAAGAGAAAATGTACTTGGAGATAGAAGCCAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATTCAGGGAAGAGAAAATGTACTTGGAGATAGAAGCCAGATTT  239

seq1  CTATCTTTTAAACTGTTTGGAATATTAGTTGGTAGGGATACACTGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTTAAACTGTTTGGAATATTAGTTGGTAGGGATACACTGAGCCA  289

seq1  TTTAAACAGGGACATGGCCCCATCCAAGAAGTAGTGCAAATAAGGACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGGGACATGGCCCCATCCAAGAAGTAGTGCAAATAAGGACTCA  339

seq1  AGAACTATATTAAGGGGTGGTATTGTGCACTATGTATAATTATATACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATATTAAGGGGTGGTATTGTGCACTATGTATAATTATATACTTG  389

seq1  TTATGTTCTAATGCTTGTTCTATAAATTGTACTCCAATCACTTCAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTAATGCTTGTTCTATAAATTGTACTCCAATCACTTCAGAACA  439

seq1  AATGTATTAATGGACTACAGTGGTGGGTTACCAATGCGGATCTCACAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTAATGGACTACAGTGGTGGGTTACCAATGCGGATCTCACAGAC  489

seq1  CACAACCTAAAACTAGAGTTAACCTAACACTGGCCATAAAGTAGCTAACC  550
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  CACAACCTATAACTAGAGTTAACCTAACACTGCCCATAAAGTAGCTAACC  539

seq1  AAACTTGTACTTGAAAACCGACATTTAAATAGTTAACATCAGTAAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTACTTGAAAACCGACATTTAAATAGTTAACATCAGTAAATAAA  589

seq1  TTTAGAAACTATGATGTCATCCAGAAGAGAGCTATAATAGCACCACTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAACTATGATGTCATCCAGAAGAGAGCTATAATAGCACCACTTCC  639

seq1  TAGAGAGTTACCATGAGGAATAAGTCTGCAGAGCACTGGATAAAAGCCAG  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGAGAGTTACCATGAGGAATAAGTCTGCAGAGCATTGGATAAAAGCCAG  689

seq1  CGCTGCCCAGACAGCCCCCTAGTCAATCAGCAGCAGTCATCTCTCCGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCCAGACAGCCCCCTAGTCAATCAGCAGCAGTCATCTCTCCGTCT  739

seq1  TAGAGTCTCAGGGCTGACTTACTGACTTACCTCCCGTAAACTAATTTTAG  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTCAGGGTTGACTTACTGACTTACCTCCCGTAAACTAATTTTAG  789

seq1  CAGTATAAACTATATTTGATCCGTCTCTTTTAAACTTGGGATGTTCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAAACTATATTTGATCCGTCTCTTTTAAACTTGGGATGTTCTTTG  839

seq1  TCTTTAATAACAAAAACAATGTCTGCTGGGATACTATTTGGTGTTTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATAACAAAAACAATGTCTGCTGGGATACTATTTGGTGTTTCATC  889

seq1  GCCTTCCCTCGGAAAAGTGATTTTGGTGCCTTCTTTCCACCCTTTTTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCTCGGAAAAGTGATTTTGGTGCCTTCTTTCCACCCTTTTTTGA  939

seq1  TCTCAATGGTGAGAATTTTGTCCTCAGATCTGTAACTCCTTCCGTCAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGGTGAGAATTTTGTCCTCAGATCTGTAACTCCTTCCGTCAGGA  989

seq1  TTTAATCTTTTTCGAGAAATCTTCATCCGTTTGGTGCAGCCACTATATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTTTTCGAGAAATCTTCATCCGTTTGGTGCAGCCACTATATAT  1039

seq1  TTCTTCAAGCGATACTTTAAGTTCATGAATAATGGGAGGGTCTTGTTTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAGCGATACTTTAAGTTCATGAATAATGGGAGGGTCTTGTTTGA  1089

seq1  GACGGGAGGGTCCCACAGAATTC  1123
      |||||||||||||||||||||||
seq2  GACGGGAGGGTCCCACAGAATTC  1112