BAC Information

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BAC

Clone NameB6Ng01-054E11
Chromosome3 (Build37)
Map Location 123,160,308 - 123,319,921
singlet/doubletdoublet
Overlap genePrss12, EG668804, Ndst3
Upstream geneBcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054E11.bB6Ng01-054E11.g
ACCDH877064DH877065
length8771,148
definitionDH877064|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E11, 5' end.DH877065|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,319,039 - 123,319,921)(123,160,308 - 123,161,477)
sequence
gtcttttcattcttctgacttcctagactgcatatcatgtattttctaag
atgtggctaggtttggccaagatgggagggacagcgggaggacaaatgtc
atgtgacacttcctatggaaatatctattcatcccacataggatagtgat
atcaagaccaaaggaacagaaatggccccacctaaatgtggcttagcgag
ccaggagtttattggggtaacttgcagaaccctgagcaactgaaaagccc
accccagcaaggtgacagctcagagacaatgcattccaggggctccctgc
tggaattacagacagttcagcctgtggatgagtctcctccccccagaatt
gtcactgcttacatcactttgtgaaaggggacttaggaagcctgtaaatt
tcaatatcttcctgggccttggtagcttgaatttatttccttccttagga
atgtttcggttcacagtaaatggctatgcaacaataagtgggagccaatt
ctgcagctcacatcacctttagtattctttaaagagtgtgtgcatgtgtg
tgcatgcatgtgtgtgtatttgtgtgtatgcatgtacatgtgtgtgcacg
catgtgtgtctgtgtatgtgcatgtgtacatgtatacacgcatgtgtgtg
catacatgtttatgttttatacatgtatgtggtcgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtggcaaagacactctgtgagtgcac
atgtggaggcctgagatgacatcaggtatccttcttgatctgccccactt
tatcatggaagtatgttcctcaactccagacatttgttaatggtgactgt
cctagaagcttgctgcggtgatcccac
gaattcactttgtagaccaggctggccttgaacttagaaatctgcctgcc
tctctgggctgctttttaatctttcttctattgagctaagctattactct
ttctcatttataattgtgtacctataatttgtacaaatgtgtgcatacac
atagacacatcgtatccacagccctactgaaaatccatccggccattagg
acaaagtcgctcctgctagaggatcctgaccaagccactcttctccattc
tcagtggacagaaagcctgaggctctctatgaatctgcctgactagaatg
gtgatcactggcatggtatagcacatgtgcaaacccccaatgtcttaaag
ggagattcttgtaggatatttgcctaggtttggaggccaggagaaagtgc
tgggcagtagttcaggggatgattcatcatggcacagaaactgtgttgtg
ggatacagcttctcccatccacaaattaaggaaatcagtatagtttttac
gattgcaaccactataagcatcctaggatagtaagaataaactgctacct
gaccgagagctcatttgtgggtgacatgcaaattggcttctcagaattac
cggtgtgtatgaatgtgttaaaagaatattggagaagcactccttatctc
ttgtcacatcacagatagagcgaagtgactccagtctcttgccgtgtggt
tcaggcctgagaaggtatggcacactagaatcttggcttggaagccgttc
ccactgcctttgaatgctacggttttccaagtctcatctctaaatgtccc
tgttatttaggcgacaagttgctaggcactattctttatattacttctct
tgtttttttcaaagaataatatgattaaatcatttctccctttcctttct
ctctccaaaccctctcctacaccccaccttgcgtcttacaaagagtgcct
tctttttccctattgtgtacatgcatacatgtataatataaaatatcctg
ataataaataaacctgctcaatctgtgtgttaattggttgtagattcaag
gcctgtacctttggtactggataccatgggtatactgtccctgggagccg
ctctccctggaaggctatagctcactgtggttgtgcatgatacaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123319039_123319921
seq2: B6Ng01-054E11.b_54_930 (reverse)

seq1  GTGGGATCACCGCAGCAAGCTGTCTAGAACAGTCACCATTAACAAATGTC  50
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  GTGGGATCACCGCAGCAAGCT-TCTAGGACAGTCACCATTAACAAATGTC  49

seq1  TGGGCTTGAGAGAACATACTTCAGTGAATAAAGTGGGGCAGGATCAAGGA  100
      |||  ||||| |||||||||||  || ||||||||||||| ||||||| |
seq2  TGGAGTTGAG-GAACATACTTCCATG-ATAAAGTGGGGCA-GATCAAGAA  96

seq1  GGATCCCTGATGTCATCCTCAGGCCTCCACATGTGCACTCACAGAAGTGT  150
      |||| ||||||||||| ||||||||||||||||||||||||||| |||||
seq2  GGATACCTGATGTCAT-CTCAGGCCTCCACATGTGCACTCACAG-AGTGT  144

seq1  ATATGCACCACACACACACACACACACACACACACACACACACACACACG  200
       | |||  ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCACACACACACACACACACACACACACACACACACACACACACG  194

seq1  ACCACATACATGTATAAAACATAAACATGTATGCACACACATGCGTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATACATGTATAAAACATAAACATGTATGCACACACATGCGTGTAT  244

seq1  ACATGTACACATGCACATACACAGACACACATGCGTGCACACACATGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACACATGCACATACACAGACACACATGCGTGCACACACATGTAC  294

seq1  ATGCATACACACAAATACACACACATGCATGCACACACATGCACACACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACACACAAATACACACACATGCATGCACACACATGCACACACTC  344

seq1  TTTAAAGAATACTAAAGGTGATGTGAGCTGCAGAATTGGCTCCCACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAATACTAAAGGTGATGTGAGCTGCAGAATTGGCTCCCACTTAT  394

seq1  TGTTGCATAGCCATTTACTGTGAACCGAAACATTCCTAAGGAAGGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATAGCCATTTACTGTGAACCGAAACATTCCTAAGGAAGGAAATA  444

seq1  AATTCAAGCTACCAAGGCCCAGGAAGATATTGAAATTTACAGGCTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGCTACCAAGGCCCAGGAAGATATTGAAATTTACAGGCTTCCTA  494

seq1  AGTCCCCTTTCACAAAGTGATGTAAGCAGTGACAATTCTGGGGGGAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTTTCACAAAGTGATGTAAGCAGTGACAATTCTGGGGGGAGGAG  544

seq1  ACTCATCCACAGGCTGAACTGTCTGTAATTCCAGCAGGGAGCCCCTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCCACAGGCTGAACTGTCTGTAATTCCAGCAGGGAGCCCCTGGAA  594

seq1  TGCATTGTCTCTGAGCTGTCACCTTGCTGGGGTGGGCTTTTCAGTTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTCTCTGAGCTGTCACCTTGCTGGGGTGGGCTTTTCAGTTGCTC  644

seq1  AGGGTTCTGCAAGTTACCCCAATAAACTCCTGGCTCGCTAAGCCACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTGCAAGTTACCCCAATAAACTCCTGGCTCGCTAAGCCACATTT  694

seq1  AGGTGGGGCCATTTCTGTTCCTTTGGTCTTGATATCACTATCCTATGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGCCATTTCTGTTCCTTTGGTCTTGATATCACTATCCTATGTGG  744

seq1  GATGAATAGATATTTCCATAGGAAGTGTCACATGACATTTGTCCTCCCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAGATATTTCCATAGGAAGTGTCACATGACATTTGTCCTCCCGC  794

seq1  TGTCCCTCCCATCTTGGCCAAACCTAGCCACATCTTAGAAAATACATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCCCATCTTGGCCAAACCTAGCCACATCTTAGAAAATACATGAT  844

seq1  ATGCAGTCTAGGAAGTCAGAAGAATGAAAAGAC  883
      |||||||||||||||||||||||||||||||||
seq2  ATGCAGTCTAGGAAGTCAGAAGAATGAAAAGAC  877

seq1: chr3_123160308_123161477
seq2: B6Ng01-054E11.g_69_1216

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTTAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTTAGAAATCTGCCTGCC  50

seq1  TCTCTGGGCTGCTTTTTAATCTTTCTTCTATTGAGCTAAGCTATTACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCTGCTTTTTAATCTTTCTTCTATTGAGCTAAGCTATTACTCT  100

seq1  TTCTCATTTATAATTGTGTACCTATAATTTGTACAAATGTGTGCATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTATAATTGTGTACCTATAATTTGTACAAATGTGTGCATACAC  150

seq1  ATAGACACATCGTATCCACAGCCCTACTGAAAATCCATCCGGCCATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACATCGTATCCACAGCCCTACTGAAAATCCATCCGGCCATTAGG  200

seq1  ACAAAGTCGCTCCTGCTAGAGGATCCTGACCAAGCCACTCTTCTCCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCGCTCCTGCTAGAGGATCCTGACCAAGCCACTCTTCTCCATTC  250

seq1  TCAGTGGACAGAAAGCCTGAGGCTCTCTATGAATCTGCCTGACTAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGACAGAAAGCCTGAGGCTCTCTATGAATCTGCCTGACTAGAATG  300

seq1  GTGATCACTGGCATGGTATAGCACATGTGCAAACCCCCAATGTCTTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCACTGGCATGGTATAGCACATGTGCAAACCCCCAATGTCTTAAAG  350

seq1  GGAGATTCTTGTAGGATATTTGCCTAGGTTTGGAGGCCAGGAGAAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTCTTGTAGGATATTTGCCTAGGTTTGGAGGCCAGGAGAAAGTGC  400

seq1  TGGGCAGTAGTTCAGGGGATGATTCATCATGGCACAGAAACTGTGTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTAGTTCAGGGGATGATTCATCATGGCACAGAAACTGTGTTGTG  450

seq1  GGATACAGCTTCTCCCATCCACAAATTAAGGAAATCAGTATAGTTTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGCTTCTCCCATCCACAAATTAAGGAAATCAGTATAGTTTTTAC  500

seq1  GATTGCAACCACTATAAGCATCCTAGGATAGTAAGAATAAACTGCTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAACCACTATAAGCATCCTAGGATAGTAAGAATAAACTGCTACCT  550

seq1  GACCGAGAGCTCATTTGTGGGTGACATGCAAATTGGCTTCTCAGAATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAGAGCTCATTTGTGGGTGACATGCAAATTGGCTTCTCAGAATTAC  600

seq1  CGGTGTGTATGAATGTGTTAAAAGAATATTGGAGAAGCACTCCTTATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGTATGAATGTGTTAAAAGAATATTGGAGAAGCACTCCTTATCTC  650

seq1  TTGTCACATCACAGATAGAGCGAAGTGACTCCAGTCTCTTGCCGTGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACATCACAGATAGAGCGAAGTGACTCCAGTCTCTTGCCGTGTGGT  700

seq1  TCAGGCCTGAGAAGGTATGGCACACTAGAATCTTGGCTTGGAAGCCGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTGAGAAGGTATGGCACACTAGAATCTTGGCTTGGAAGCCGTTC  750

seq1  CCACTGCCTTTGAATGCTACGGTTTTCCAAGTCTCATCTCTAAATGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCTTTGAATGCTACGGTTTTCCAAGTCTCATCTCTAAATGTCCC  800

seq1  TGTTATTTAGGCGACAAGTTGCTAGGCACTATTCTTTATATTACTTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTAGGCGACAAGTTGCTAGGCACTATTCTTTATATTACTTCTCT  850

seq1  TGTTTTTTTTCAAAGAATAATATGATTAAATCATTTCTCCCTTCCCTTTC  900
      || |||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  TG-TTTTTTTCAAAGAATAATATGATTAAATCATTTCTCCCTTTCCTTT-  898

seq1  CTCTCTCCAAACCCTCTCCTACACCCCACCTTGCGTCTTTACAAAGAGTG  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTCTCCAAACCCTCTCCTACACCCCACCTTGCGTC-TTACAAAGAGTG  947

seq1  GCTTCTTTTTTCCCTAATTGTTGTTACATGCATACATGTATAAATATAAA  1000
       |||| ||||||||| |||||   ||||||||||||||||| ||||||||
seq2  CCTTC-TTTTTCCCT-ATTGT--GTACATGCATACATGTAT-AATATAAA  992

seq1  TATTCCTGATTAATTAAATAAAACCTGCTCAATCTGTGTGTTAATTGTAT  1050
         |||||||  | ||||| |||||||||||||||||||||||||||  |
seq2  ATATCCTGAT--AATAAAT-AAACCTGCTCAATCTGTGTGTTAATTGGTT  1039

seq1  GTAGGTTTTCAGAGCTGTACCTTTGGTACTGGATAACCAAGTGGTGTACT  1100
      ||| | ||  ||  |||||||||||||||||||| |||| | ||| ||||
seq2  GTA-GATTCAAGGCCTGTACCTTTGGTACTGGAT-ACCATG-GGTATACT  1086

seq1  GTTCCCTGGGGAAGGCGAGCTCTCCTGGGTAGGCATTAGGCTCACTGTGG  1150
      | ||||||||  || |  |||||||  || ||||  || |||||||||||
seq2  G-TCCCTGGG--AGCC--GCTCTCCCTGGAAGGCTATA-GCTCACTGTGG  1130

seq1  TTTGTGTGCATGAT-CAAGTA  1170
      |   |||||||||| ||||||
seq2  T---TGTGCATGATACAAGTA  1148