BAC Information

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BAC

Clone NameB6Ng01-054H08
Chromosome3 (Build37)
Map Location 88,868,250 - 88,994,672
singlet/doubletdoublet
Overlap geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik
Upstream geneTtc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3
Downstream geneGba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054H08.bB6Ng01-054H08.g
ACCDH877195DH877196
length1,149810
definitionDH877195|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H08, 5' end.DH877196|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,868,250 - 88,869,421)(88,993,867 - 88,994,672)
sequence
gaattctcacatggctggttggctcctgcagctcctccttctcccccagt
catagcaattgaccttcctcacttctagttcctaggccacacaaatccaa
aggtcctgcctcagtctacctgcccaaccattggccattggctctttatt
gattgatgataaaccaattggagacaaggacctttggtgtttagacacac
agattcccgattttgggggctggattaattcaaagctaaattagagcaca
tccgtagcaatgttgtatgtatatatatatatatacatgtcataacatgc
atgtgaaggcctaagttctgtcctcctggcttatgggtccctagggtcaa
agtcaggttgtcagaattagcagcaagtacctttacttggtgagccatct
catcagcctgacagtaattttattttttctatcagtgtatataatcaaaa
atattctggggggaaaaaaagtcaggcatggtggtacacgcctttaatct
cagcacttgggaggcagagacaggcgaatttctgagtttgaggccagcct
ggtctacagagtgagttccaggacagccagagctacacagagaaacccta
tctcaaaaaaccaaaaataaataaataaataaataaataaataaataaaa
ttattctgaccaagtatagtggtatatatctttaatttcagcacttggga
gacagatgtagataggatgagttcaaaggcagcctggtctacatagagtt
ccttccattgaacccatcttggacgagtgggcagggtggtttctcggtta
gcaagatagctcttcaggtaaaagttcttactatgcaattctagcaacct
gaatttattcccagagctcacagtgtaataatgttggaagaggggatttt
actctgctaggtcattatctgacctctgtatgcatgccatggcatgtata
tgcccacatggcatataattttttaatcaaaattcgttcagtcagtaaag
tactcagtattgtacagcatgatgacgtagttatctcaaacatgtatgaa
atacaagtagccgatgaggtcacacatcttaatctcagttcatgcacagc
caaacatctgcatggaatatgagtcatttccgaacggataatctttgta
gaattccattgtcgggctggtaagatggctcagcggtgtaaaagccggta
aaggatacccagagagtaaagaaagaagaaaaacaggaaactgtggtgtc
ttcaaagatgaggaggaaactcacacgaaaggtgctggtgctggatcttg
gttgattgcagaagtgagtgacaactttgtaaaaccggcatgacatgata
acccggactggaaccttgccactcggcaagtggcaacagaagactcaact
gttcaagtttggagagcccgagaaacagctcagtggttaaggtcatccaa
gggtcagagttcaattctcagcacccacatggcagctcacaatcatctgg
caactccaagtctaggggctctgaagtcctcctctggactctgcaggcac
tgggaagcacttggtatgcagacatacatgcaagcaaagcattcgtacac
attaataaatatttttatatatattgtttaaggttggggttggggaaata
gctcagtgggtaagtgcttgccttcagcgtgaggaccaagctcaaagcct
tcaaacccatataaagtctggccctgtaatcccagttggcttgtatggga
gaatgaggatttaggagacagggcaatccccagctgaggaataactagcc
tggcagatgcagcagataagacaacagagatcctgttttcaaacaagatg
ggaggcaaggtctaacacttgttcctctgatttctgaacttgctatggaa
catgtaccatgtcgtgtgcagtctcacactttaccaaaacacacacacac
acacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88868250_88869421
seq2: B6Ng01-054H08.b_44_1192

seq1  GAATTCTCACATGGCTGGTTGGCTCCTGCAGCTCCTCCTTCTCCCCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATGGCTGGTTGGCTCCTGCAGCTCCTCCTTCTCCCCCAGT  50

seq1  CATAGCAATTGACCTTCCTCACTTCTAGTTCCTAGGCCACACAAATCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAATTGACCTTCCTCACTTCTAGTTCCTAGGCCACACAAATCCAA  100

seq1  AGGTCCTGCCTCAGTCTACCTGCCCAACCATTGGCCATTGGCTCTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGCCTCAGTCTACCTGCCCAACCATTGGCCATTGGCTCTTTATT  150

seq1  GATTGATGATAAACCAATTGGAGACAAGGACCTTTGGTGTTTAGACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATGATAAACCAATTGGAGACAAGGACCTTTGGTGTTTAGACACAC  200

seq1  AGATTCCCGATTTTGGGGGCTGGATTAATTCAAAGCTAAATTAGAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCGATTTTGGGGGCTGGATTAATTCAAAGCTAAATTAGAGCACA  250

seq1  TCCGTAGCAATGTTGTATGTATATATATATATATACATGTCATAACATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTAGCAATGTTGTATGTATATATATATATATACATGTCATAACATGC  300

seq1  ATGTGAAGGCCTAAGTTCTGTCCTCCTGGCTTATGGGTCCCTAGGGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGGCCTAAGTTCTGTCCTCCTGGCTTATGGGTCCCTAGGGTCAA  350

seq1  AGTCAGGTTGTCAGAATTAGCAGCAAGTACCTTTACTTGGTGAGCCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTTGTCAGAATTAGCAGCAAGTACCTTTACTTGGTGAGCCATCT  400

seq1  CATCAGCCTGACAGTAATTTTATTTTTTCTATCAGTGTATATAATCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCTGACAGTAATTTTATTTTTTCTATCAGTGTATATAATCAAAA  450

seq1  ATATTCTGGGGGGAAAAAAAGTCAGGCATGGTGGTACACGCCTTTAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGGGGGGAAAAAAAGTCAGGCATGGTGGTACACGCCTTTAATCT  500

seq1  CAGCACTTGGGAGGCAGAGACAGGCGAATTTCTGAGTTTGAGGCCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGGAGGCAGAGACAGGCGAATTTCTGAGTTTGAGGCCAGCCT  550

seq1  GGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTA  600

seq1  TCTCAAAAAACCAAAAATAAATAAATAAATAAATAAATAAATAAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAACCAAAAATAAATAAATAAATAAATAAATAAATAAATAAAA  650

seq1  TTATTCTGACCAAGTATAGTGGTATATATCTTTAATTTCAGCACTTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGACCAAGTATAGTGGTATATATCTTTAATTTCAGCACTTGGGA  700

seq1  GACAGATGTAGATAGGATGAGTTCAAAGGCAGCCTGGTCTACATAGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGTAGATAGGATGAGTTCAAAGGCAGCCTGGTCTACATAGAGTT  750

seq1  CCTTCCATTGAACCCATCTTGGACGAGT-GGCA-GGTGGTTTCTCGGTTA  798
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  CCTTCCATTGAACCCATCTTGGACGAGTGGGCAGGGTGGTTTCTCGGTTA  800

seq1  GCAAGATAGCTCTTCAGGTAAAAGTTCTTACTATGCAATTCTAGCAACCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATAGCTCTTCAGGTAAAAGTTCTTACTATGCAATTCTAGCAACCT  850

seq1  GAATTTATTCCCAGAGCTCACAGTGTAATAATGTTGGAAGAGGGGATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTCCCAGAGCTCACAGTGTAATAATGTTGGAAGAGGGGATTTT  900

seq1  ACTCTGCTAGGTCATTATCTGACCTCTGTATGCATGCCATGGCATGTATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTAGGTCATTATCTGACCTCTGTATGCATGCCATGGCATGTATA  950

seq1  TGCCCACATGGCAATAATAATTTTTTAATCAAAAATTCGTTCAGTCAGTA  998
      |||||||||||||   |||||||||||||| |||||||||||||||||| 
seq2  TGCCCACATGGCA--TATAATTTTTTAATC-AAAATTCGTTCAGTCAGT-  996

seq1  AAAGTACTCAGTATTGTACAAGCATGATGACGTAAGTTATCTCAAAACAT  1048
      ||||||||||||||||||| ||||||||||||| ||||||||| ||||||
seq2  AAAGTACTCAGTATTGTAC-AGCATGATGACGT-AGTTATCTC-AAACAT  1043

seq1  GTATGAAATTACCAGGTAAGGCCGGATGTAGAGTCACACATCTTTAATCT  1098
      |||||||||   || |||  ||| |||| || |||||||||| |||||||
seq2  GTATGAAAT--ACAAGTA--GCC-GATG-AG-GTCACACATC-TTAATCT  1085

seq1  CAGTCCATGCACCAGCACAAAACATTCTGCAGTGGATGATTGAGTCATTT  1148
      |||| |||||| |||  | ||||| |||||| ||||  | ||||||||| 
seq2  CAGTTCATGCA-CAG--CCAAACA-TCTGCA-TGGAATA-TGAGTCATT-  1128

seq1  CTCAGAAACAGTATAATCTTTGTA  1172
       || |||   | ||||||||||||
seq2  -TCCGAA--CGGATAATCTTTGTA  1149

seq1: chr3_88993867_88994672
seq2: B6Ng01-054H08.g_67_876 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTTTTGGT-AAGTGTGAGACTGCACACGAC  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTTTTGGTAAAGTGTGAGACTGCACACGAC  50

seq1  ATGGTACATGTTCCATAGCAAGTTCAGAAATCAGAGGA--CAGTGTTAGA  97
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  ATGGTACATGTTCCATAGCAAGTTCAGAAATCAGAGGAACAAGTGTTAGA  100

seq1  CCTTGCCTCCCATCTTGTTTG-AAACAGGATCTCTGTTGTCTTATCTGCT  146
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTTGCCTCCCATCTTGTTTGAAAACAGGATCTCTGTTGTCTTATCTGCT  150

seq1  GCATCTGCCAGGCTAGTTATTCCTCAGCTGGGGATTGCCCTGTCTCCTAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCCAGGCTAGTTATTCCTCAGCTGGGGATTGCCCTGTCTCCTAA  200

seq1  ATCCTCATTCTCCCATACAAGCCAACTGGGATTACAGGGCCAGACTTTAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATTCTCCCATACAAGCCAACTGGGATTACAGGGCCAGACTTTAT  250

seq1  ATGGGTTTGAAGGCTTTGAGCTTGGTCCTCACGCTGAAGGCAAGCACTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTGAAGGCTTTGAGCTTGGTCCTCACGCTGAAGGCAAGCACTTA  300

seq1  CCCACTGAGCTATTTCCCCAACCCCAACCTTAAACAATATATATAAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAGCTATTTCCCCAACCCCAACCTTAAACAATATATATAAAAAT  350

seq1  ATTTATTAATGTGTACGAATGCTTTGCTTGCATGTATGTCTGCATACCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAATGTGTACGAATGCTTTGCTTGCATGTATGTCTGCATACCAA  400

seq1  GTGCTTCCCAGTGCCTGCAGAGTCCAGAGGAGGACTTCAGAGCCCCTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCCAGTGCCTGCAGAGTCCAGAGGAGGACTTCAGAGCCCCTAGA  450

seq1  CTTGGAGTTGCCAGATGATTGTGAGCTGCCATGTGGGTGCTGAGAATTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTTGCCAGATGATTGTGAGCTGCCATGTGGGTGCTGAGAATTGA  500

seq1  ACTCTGACCCTTGGATGACCTTAACCACTGAGCTGTTTCTCGGGCTCTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACCCTTGGATGACCTTAACCACTGAGCTGTTTCTCGGGCTCTCC  550

seq1  AAACTTGAACAGTTGAGTCTTCTGTTGCCACTTGCCGAGTGGCAAGGTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAACAGTTGAGTCTTCTGTTGCCACTTGCCGAGTGGCAAGGTTC  600

seq1  CAGTCCGGGTTATCATGTCATGCCGGTTTTACAAAGTTGTCACTCACTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCGGGTTATCATGTCATGCCGGTTTTACAAAGTTGTCACTCACTTC  650

seq1  TGCAATCAACCAAGATCCAGCACCAGCACCTTTCGTGTGAGTTTCCTCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCAACCAAGATCCAGCACCAGCACCTTTCGTGTGAGTTTCCTCCT  700

seq1  CATCTTTGAAGACACCACAGTTTCCTGTTTTTCTTCTTTCTTTACTCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGAAGACACCACAGTTTCCTGTTTTTCTTCTTTCTTTACTCTCT  750

seq1  GGGTATCCTTTACCGGCTTTTACACCGCTGAGCCATCTTACCAGCCCGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCCTTTACCGGCTTTTACACCGCTGAGCCATCTTACCAGCCCGAC  800

seq1  AATGGAATTC  806
      ||||||||||
seq2  AATGGAATTC  810