BAC Information

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BAC

Clone NameB6Ng01-054J04
Chromosome3 (Build37)3 (Build37)
Map Location 41,059,332 - 41,059,737144,576,367 - 144,577,560
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054J04.bB6Ng01-054J04.g
ACCDH877281DH877282
length1,0301,170
definitionDH877281|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J04, 5' end.DH877282|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,332 - 41,059,737)(144,576,367 - 144,577,560)
sequence
gaattctttgttcagctctgagccccattttttaatgggattatttgatt
ttctgaagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcaatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctctacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
atttttcttttttttatttaattaggtattttcctcgtttacattttcaa
tgctatcccaaaggtcccccatacccacccccccccaatcccctaaccac
ccactccccctttttggccttggtgtttccctgtgctggggcatataaag
tttgcaagtccaatgggcctctctttgcagtgatggccgactaggccatc
ttttgatacatatgcagctaaagacaagagctcccgggtattggttagtt
catattgttgttccacctatagggttgcagttccctttagctccttgggg
agtttctctagctcctccattgggggccgtgtgacccatccaatagctga
ctgtgatcatccacttctgtgtttgctaggccccggcataatctcacaag
agagagctatatctgggtcctttcagcaaaatcttgctagtgtatgcaat
ggtgtcagcatttggaagctgattatgggatggatccctgcatatggcaa
tcactagatgctccatcctttcgtcacagctccaaatttgtctctgtaac
tccttctatggtgtttgttcccatttctagaaagggtaaagtgtccacac
ttggtcttcgttcttcttgatttcatgcat
gaattccatgttttctctcattacaacaataattcttcaactatctctcc
ccaattcccagtcccttctacagtgcgtgtaacttcatgctccttgcttc
atttctgggtattttactagattaccagataagcaattagatcatgggga
acgaactaatttaaaattccttcactggaaaaaaagaaaaagaaatagat
ggccgatagctgaggccagcactgcatgcttctgtgtacagaggagtcac
ttgaaggactgctcaggtgcttccctaggtggtctggggaatctgcatgt
ctgacaatccccagatatttagagggacacagatgtggttgatacaagaa
cattgttctctcttctgtgtagaatggggaaatacattttcaacttatca
ggtgccccctatgcttatcgttgtaagagaggacttatgctacaacattt
cttagatacccaagcatttattcctagaggaaaatgtttcttttctctgt
tgaactacagatgtagtaaatgatttggagaacaaaaagaaaacaaaaca
aagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagagaagaa
aggaacagaagttgttgatcataaaataaaataagttaattgcattatca
atgaggaataatgataataaagtcttgcctaagaaacatttgccacagga
agggcctcacatatataaacagaaaataacacgggaagattaatgtagag
aactgaaagtcaatcaattataagagaaatgataagaagagtcttatgac
atctgcataagttggtagggcacaaagagataatatgttaaagtaattat
gaaacatacacaattataagtgtgggttatcatgttatatgagtatatat
gtatatatatatatatacatatatatatatataccaaagtgagtcaagaa
tacatcattcataatgtataatatatatatcaaagtgagtcaagatacat
cattcataatgtattatttgggcagaactgatggagataactccatctat
gtgaaactgtaagcacagcacgactaggcatattaagggcatgcatttgt
gacaactaacgagcttcgatctgtaatgatgtattctttcgtaagtttta
acagggctgatgctttcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059332_41059737
seq2: B6Ng01-054J04.b_44_450 (reverse)

seq1  AGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATC  50
      |||| |||||||||||||||| | ||||||||||||||||||||||||||
seq2  AGAAAAATGCGAATTGATCCATTTCTATCTCCTTGTACTAAGGTCAAATC  50

seq1  TAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAG  100
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAG  100

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTC  150
      |||||||||| ||||||||||| ||||||||||  | |||||||||||||
seq2  AGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTAGAGGGGAAAAATTC  150

seq1  CTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATG  200
      ||| | ||||||||||||||||||||||||||||||||||| || |||||
seq2  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATCGATAAATG  200

seq1  GGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATA  250
      ||||||||| ||| |||||||||||||||| |||||||||||||||||||
seq2  GGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATA  250

seq1  AGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  299
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  AGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAA  300

seq1  TCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGA  349
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCGGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGA  350

seq1  TTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACA  399
       | ||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  CTTCAGAAAATCAAATAATCCCATTAAAAAATGGGGCTCAGAGCTGAACA  400

seq1  AAGAATT  406
      |||||||
seq2  AAGAATT  407

seq1: chr3_144576367_144577560
seq2: B6Ng01-054J04.g_66_1235 (reverse)

seq1  CTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAATTACATCA  50
      |||||||||||||||||  || |||||   | | |||||  | |||||||
seq2  CTTGAAAGCATCAGCCC--TGTTAAAA--CTTACGAAAG--AATACATCA  44

seq1  TTGTAACAGATGAGAGGTTGGTGTGTGTTGTCACACATGCATGGCCTTAT  100
      ||   ||||||   || |    ||  ||||||||| ||||||| ||||| 
seq2  TT---ACAGATCGAAGCT---CGTTAGTTGTCACAAATGCATGCCCTTA-  87

seq1  ATAATGCATAGTCTGTTGCTGTGCTTACAGTTTCACATTAGAATGGAGTG  150
      || |||| |||||   ||||||||||||||||||||| ||| ||||||| 
seq2  AT-ATGCCTAGTC--GTGCTGTGCTTACAGTTTCACA-TAG-ATGGAGT-  131

seq1  TATCTCCATCAGTTTCTGCCCAAATAATACATTATTGAATGATGTATTCT  200
      |||||||||||| ||||||||||||||||||||| ||||||||||| |||
seq2  TATCTCCATCAG-TTCTGCCCAAATAATACATTA-TGAATGATGTA-TCT  178

seq1  TGACTCACTTTGATATATATATTAATACATTATTGAATGATGTATTCTTG  250
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  TGACTCACTTTGATATATATATT-ATACATTA-TGAATGATGTATTCTTG  226

seq1  ACTCACTTTGGTATATATATATATATGTATATATATATATATACATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTGGTATATATATATATATGTATATATATATATATACATATAT  276

seq1  ACTCATATAACATGATAACCCACACTTATAATTGTGTATGTTTCATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATATAACATGATAACCCACACTTATAATTGTGTATGTTTCATAATT  326

seq1  ACTTTAACATATTATCTCTTTGTGCCCTACCAACTTATGCAGATGTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACATATTATCTCTTTGTGCCCTACCAACTTATGCAGATGTCATA  376

seq1  AGACTCTTCTTATCATTTCTCTTATAATTGATTGACTTTCAGTTCTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTCTTATCATTTCTCTTATAATTGATTGACTTTCAGTTCTCTAC  426

seq1  ATTAATCTTCCCGTGTTATTTTCTGTTTATATATGTGAGGCCCTTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTTCCCGTGTTATTTTCTGTTTATATATGTGAGGCCCTTCCTGT  476

seq1  GGCAAATGTTTCTTAGGCAAGACTTTATTATCATTATTCCTCATTGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTTTCTTAGGCAAGACTTTATTATCATTATTCCTCATTGATAA  526

seq1  TGCAATTAACTTATTTTATTTTATGATCAACAACTTCTGTTCCTTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAACTTATTTTATTTTATGATCAACAACTTCTGTTCCTTTCTTC  576

seq1  TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTGTTTT  626

seq1  GTTTTCTTTTTGTTCTCCAAATCATTTACTACATCTGTAGTTCAACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTTTGTTCTCCAAATCATTTACTACATCTGTAGTTCAACAGAG  676

seq1  AAAAGAAACATTTTCCTCTAGGAATAAATGCTTGGGTATCTAAGAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACATTTTCCTCTAGGAATAAATGCTTGGGTATCTAAGAAATGT  726

seq1  TGTAGCATAAGTCCTCTCTTACAACGATAAGCATAGGGGGCACCTGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATAAGTCCTCTCTTACAACGATAAGCATAGGGGGCACCTGATAA  776

seq1  GTTGAAAATGTATTTCCCCATTCTACACAGAAGAGAGAACAATGTTCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAATGTATTTCCCCATTCTACACAGAAGAGAGAACAATGTTCTTG  826

seq1  TATCAACCACATCTGTGTCCCTCTAAATATCTGGGGATTGTCAGACATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCACATCTGTGTCCCTCTAAATATCTGGGGATTGTCAGACATGC  876

seq1  AGATTCCCCAGACCACCTAGGGAAGCACCTGAGCAGTCCTTCAAGTGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCCAGACCACCTAGGGAAGCACCTGAGCAGTCCTTCAAGTGACT  926

seq1  CCTCTGTACACAGAAGCATGCAGTGCTGGCCTCAGCTATCGGCCATCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTACACAGAAGCATGCAGTGCTGGCCTCAGCTATCGGCCATCTAT  976

seq1  TTCTTTTTCTTTTTTTCCAGTGAAGGAATTTTAAATTAGTTCGTTCCCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTTTTTTTCCAGTGAAGGAATTTTAAATTAGTTCGTTCCCCA  1026

seq1  TGATCTAATTGCTTATCTGGTAATCTAGTAAAATACCCAGAAATGAAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAATTGCTTATCTGGTAATCTAGTAAAATACCCAGAAATGAAGCA  1076

seq1  AGGAGCATGAAGTTACACGCACTGTAGAAGGGACTGGGAATTGGGGAGAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATGAAGTTACACGCACTGTAGAAGGGACTGGGAATTGGGGAGAG  1126

seq1  ATAGTTGAAGAATTATTGTTGTAATGAGAGAAAACATGGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGAAGAATTATTGTTGTAATGAGAGAAAACATGGAATTC  1170