BAC Information

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BAC

Clone NameB6Ng01-054M19
Chromosome3 (Build37)
Map Location 96,754,997 - 96,925,747
singlet/doubletdoublet
Overlap gene9230114J08Rik, Gja5
Upstream geneLOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8
Downstream geneAcp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M19.bB6Ng01-054M19.g
ACCDH877444DH877445
length3791,081
definitionDH877444|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M19, 5' end.DH877445|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,925,363 - 96,925,747)(96,754,997 - 96,756,088)
sequence
ccagttttgtgcttctgtgactatccatacatataataaggttgttacac
ttacattttctggatgggattaaaggatatgacagagtacaaactgtagg
ccttatgtaaccattgcatttacttcctcccataacacactaaggcaaat
gcctttgtcaagactctttttagttataaggaaaaaataaggttattcaa
tgttttaaacaacagaaataaaacaatggctcatgtaaccaaaagattca
tggggatatggccccccgggtacttctgagcccaggaattagtcggaatg
attgtgtgtgtgtttgtgtgtatgtggtgtgtgtatgtgcatgtgtatgt
atgtttgtgtggggtagaggcaggaggtc
gaattcattctttttggtgaactctaaccccacttcttgtttccctacta
tctgttctgtgagtagctgtgttcaacctcatagccgtagtagatccagg
taacaagtatttctaggagcggagtggagcagagttttttggtttttgtt
tttttctcttatcatcagtctttgtccttccgtccttggcacatcagtgg
ctctcagaatcttcaattttttctcttttaaatattttatctagcgtttt
cttcccatctgatctaggcaggcgagctgacaggacttactgctctgcaa
cagctgtaagtctcagtgctatcgggttcaaacgtgggttttccgagatg
tttctcttgtaaccagttgctatttggctcggtgtaagaatagcgataaa
cttggcttataaagttcctatcatgttaagaatactacacatccagagca
gaagtaggaatgcacttcaggtacccccaaaagtgaggctgttttaggat
gtagtggtcagcatgccccaactctgccaaagcctgagaggcatggagac
cccactagctccctgcttcttgtaggaaatctgcgatctcttcttcaggg
ctaaatccttctttccttcagtccttgccaggatgcatctgcagtatgtg
cacattgcttatgttgactgtctaagtattaccctcactttctggtattg
gtaacctgaggggggcaggtaccactcttcagagcaactgcagtcatacg
agactttgcaattctgtgttcttgccaccctgggacacaagggaaaaccc
ttccctgggtctcagtttccttacctacaaatgagaagtttgtattagtt
gtttttaaaggagttcttccagtttatatggttaatatttataattgcag
ctattgctttcaaaatcacggctaggaccccagtgcccagactcatgtta
ggctcaggaaacagcaaaccttcccttggtacagatgaccagtgtctgat
gtttagcttaaaccagtgtttgaagaactatcaaccacagcttcttcagt
gacttcaacctggactccttcttatagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96925363_96925747
seq2: B6Ng01-054M19.b_45_429 (reverse)

seq1  GACCTCTGACCTCTACACCACACATACATACATACACATGCACATACACA  50
      ||||||   ||||||| ||||||| |||||||||||||||||||||||||
seq2  GACCTCCTGCCTCTACCCCACACAAACATACATACACATGCACATACACA  50

seq1  CACCACATACACACAAACACACACACAATCATTCCGACTAATTCCTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACATACACACAAACACACACACAATCATTCCGACTAATTCCTGGGC  100

seq1  TCAGAAGTACCCGGGGGGCCATATCCCCATGAATCTTTTGGTTACATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTACCCGGGGGGCCATATCCCCATGAATCTTTTGGTTACATGAG  150

seq1  CCATTGTTTTATTTCTGTTGTTTAAAACATTGAATAACCTTATTTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTTATTTCTGTTGTTTAAAACATTGAATAACCTTATTTTTTCC  200

seq1  TTATAACTAAAAAGAGTCTTGACAAAGGCATTTGCCTTAGTGTGTTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTAAAAAGAGTCTTGACAAAGGCATTTGCCTTAGTGTGTTATGG  250

seq1  GAGGAAGTAAATGCAATGGTTACATAAGGCCTACAGTTTGTACTCTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTAAATGCAATGGTTACATAAGGCCTACAGTTTGTACTCTGTCA  300

seq1  TATCCTTTAATCCCATCCAGAAAATGTAAGTGTAACAACCTTATTATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTAATCCCATCCAGAAAATGTAAGTGTAACAACCTTATTATATG  350

seq1  TATGGATAGTCACAGAAGCACAAAACTGGGAATTC  385
      |||||||||||||||||||||||||||||||||||
seq2  TATGGATAGTCACAGAAGCACAAAACTGGGAATTC  385

seq1: chr3_96754997_96756088
seq2: B6Ng01-054M19.g_69_1149

seq1  GAATTCATTCTTTTTGGTGAACTCTAACCCCACTTCTTGTTTCCCTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTTTGGTGAACTCTAACCCCACTTCTTGTTTCCCTACTA  50

seq1  TCTGTTCTGTGAGTAGCTGTGTTCAACCTCATAGCCGTAGTAGATCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTGTGAGTAGCTGTGTTCAACCTCATAGCCGTAGTAGATCCAGG  100

seq1  TAACAAGTATTTCTAGGAGCGGAGTGGAGCAGAGTTTTTTGGTTTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTATTTCTAGGAGCGGAGTGGAGCAGAGTTTTTTGGTTTTTGTT  150

seq1  TTTTTCTCTTATCATCAGTCTTTGTCCTTCCGTCCTTGGCACATCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTTATCATCAGTCTTTGTCCTTCCGTCCTTGGCACATCAGTGG  200

seq1  CTCTCAGAATCTTCAATTTTTTCTCTTTTAAATATTTTATCTAGCGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAATCTTCAATTTTTTCTCTTTTAAATATTTTATCTAGCGTTTT  250

seq1  CTTCCCATCTGATCTAGGCAGGCGAGCTGACAGGACTTACTGCTCTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATCTGATCTAGGCAGGCGAGCTGACAGGACTTACTGCTCTGCAA  300

seq1  CAGCTGTAAGTCTCAGTGCTATCGGGTTCAAACGTGGGTTTTCCGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAAGTCTCAGTGCTATCGGGTTCAAACGTGGGTTTTCCGAGATG  350

seq1  TTTCTCTTGTAACCAGTTGCTATTTGGCTCGGTGTAAGAATAGCGATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGTAACCAGTTGCTATTTGGCTCGGTGTAAGAATAGCGATAAA  400

seq1  CTTGGCTTATAAAGTTCCTATCATGTTAAGAATACTACACATCCAGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTATAAAGTTCCTATCATGTTAAGAATACTACACATCCAGAGCA  450

seq1  GAAGTAGGAATGCACTTCAGGTACCCCCAAAAGTGAGGCTGTTTTAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGAATGCACTTCAGGTACCCCCAAAAGTGAGGCTGTTTTAGGAT  500

seq1  GTAGTGGTCAGCATGCCCCAACTCTGCCAAAGCCTGAGAGGCATGGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTCAGCATGCCCCAACTCTGCCAAAGCCTGAGAGGCATGGAGAC  550

seq1  CCCACTAGCTCCCTGCTTCTTGTAGGAAATCTGCGATCTCTTCTTCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAGCTCCCTGCTTCTTGTAGGAAATCTGCGATCTCTTCTTCAGGG  600

seq1  CTAAATCCTTCTTTCCTTCAGTCCTTGCCAGGATGCATCTGCAGTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCTTCTTTCCTTCAGTCCTTGCCAGGATGCATCTGCAGTATGTG  650

seq1  CACATTGCTTATGTTGACTGTCTAAGTATTACCCTCACTTTCTGGTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGCTTATGTTGACTGTCTAAGTATTACCCTCACTTTCTGGTATTG  700

seq1  GTAACCTGAGGGGGGCAGGTACCACTCTTCAGAGCAACTGCAGTCATACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGAGGGGGGCAGGTACCACTCTTCAGAGCAACTGCAGTCATACG  750

seq1  AGACTTTGCAATTCTGTGTTCTTGCCACCCTGGGACACAAGGGAAAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGCAATTCTGTGTTCTTGCCACCCTGGGACACAAGGGAAAACCC  800

seq1  TTCCCTGGGTCTCAGTTTCCTTACCTACAAATGAGAAGTTTGTATTAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGGTCTCAGTTTCCTTACCTACAAATGAGAAGTTTGTATTAGTT  850

seq1  GTTTTTAAAGGAGTTCTTCCAGTTTATATGGTTAATATTTATAATTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAGGAGTTCTTCCAGTTTATATGGTTAATATTTATAATTGCAG  900

seq1  CTATTGCTTTCAAAAATCACGGCTAGGACCCCAGTGCCCCAGACTCATGT  950
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  CTATTGCTTTC-AAAATCACGGCTAGGACCCCAGTG-CCCAGACTCATGT  948

seq1  TAGGCTCAGGGAAACAGCAAACCTTCCCTTGGTACAGAATTGACCAGTGT  1000
      |||||||| |||||||||||||||||||||||||||||  ||||||||||
seq2  TAGGCTCA-GGAAACAGCAAACCTTCCCTTGGTACAGA--TGACCAGTGT  995

seq1  CTGATGTTTAGCTAAAACCAGTGTTTGAAGAAACTATCAACCACAGCTTC  1050
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  CTGATGTTTAGCTTAAACCAGTGTTTGAAG-AACTATCAACCACAGCTTC  1044

seq1  TTCCAGGTGACTTCAACCTGAGACTGCTCTCCTTATAGAGAC  1092
      |||   |||||||||||||| ||||   || |||||||||||
seq2  TTC--AGTGACTTCAACCTG-GACT--CCTTCTTATAGAGAC  1081