BAC Information

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BAC

Clone NameB6Ng01-054N07
Chromosome3 (Build37)
Map Location 92,478,197 - 92,619,912
singlet/doubletdoublet
Overlap geneLce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2
Downstream geneKprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054N07.bB6Ng01-054N07.g
ACCDH877468DH877469
length1,140948
definitionDH877468|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N07, 5' end.DH877469|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,478,197 - 92,479,342)(92,618,960 - 92,619,912)
sequence
gaattccagaccaatcaatcaaagattacactgtccctgtgtagggttat
ctttggcttctgatgtctacattactgatatacccagtatttcctggcag
tattctgcagtttatgctatttaatataataattttatcctgaaatagaa
aatttgaaagtaggtactttgatacttatggacttgagttttccatgttt
gattactttgttgctgtgagctctattaaataccatgtaagttttacagt
tgcttttccatttcacttcaagtttctatcatgcagtatttgatgattga
attgaagtttgctttctataatttagttattttcacagaataattctgtt
cttacattaaaatggaaaaccttcccatctttactgtttctttcaatgct
ttcttcagtgtcataaagtatcaatgtagaactctcttacctccttgatt
ttgttttttctggcattttttttaaatgctccagtgcaaaggggatgttt
cctgagttcttccataatgtgttcagtttagaattatacaaataatactg
aacatggaatattgattttgtaaaacattgaatttgaaatttttctactg
tcaatttagggcattttgcatataggttaatattttctgcaaacagaggt
aattttctccttttttgtttgaatcttttttatgcctttctatctcaggc
ctctacctaaaattttatcaatgaagaaagtgaacatccttgccttcttc
tcaatttacaatgaaataattttacttttactttatttaggtagttgttg
atacatcattttattcctaatttcttcactgcttggttcacaaaggatgt
ttcattttctgtaggcttttttggcatcaatgtagaagagtatcatgacc
ttgaacctaagtttattcatacactctattgcatttactgataagccatt
gttccacaattctagaatccagtactcaaaccaactatcatggtattata
tttaatgtgctccattctcaatgttttaatataatatttataaatcatca
atttgccacaaatatttcatataagtttgtgatggtcaccactatttcga
ctactaagcccttcaagagccactctagatctttttctaa
gaattccaagctcagggttggctcagggactttctagaacattgaaacac
tggtggagtcttatctatatatcaaaatcaatccttaaaggcacttataa
taaaacaatactgaaagcgagcacacagatccatataccagactaatgca
gggataggttttgagtatatgtgctattggaatgctaatgaaagcctcct
ccgggaggctaaatttccatgaaactctgcctcaggactgcttccaggtt
tctaaacctgtaatgggagtcactaatggagtggatgtagccgatgctag
taaccaaaagacatcctgtgtgcatgcagatactttgatgatgtttggag
gtgtagttggatggtgagcagatttggtccatggccatggattagtcctg
tgttttggatgactagttctatagagcatctgcattgtggtgactgagat
gaaccaggaaaatgggtgataattggtgattcttgtgttttccattgtca
gggaccatcacaagtttatttacctaaataagagggtttctgatctggaa
agtaaagctagataaacagacttagaaagaacccaggctttgcctaatct
acctgtcatactcttcatgttttgccacaggaatcttgagctgagttaac
atctttccccttttctctggagttattcccattaaggaaaagattattta
tcaccttgcatcagtacatccactcatgtcatagctatttactgggactt
ggctaactgccagaaaattattgatgttggagatgcaatcataagcaatg
taaataatgtatgtgttatgaactttgggatgggaggcatagggtgtcct
ggaaagcacatagagggaatgtagtggatagatgtcaggaggcaactata
ggtcacagatgatggagctgatataatggatgatgaaagagggaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92478197_92479342
seq2: B6Ng01-054N07.b_47_1186

seq1  GAATTCCAGACCAATCAATCAAAGATTACACTGTCCCTGTGTAGGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAATCAATCAAAGATTACACTGTCCCTGTGTAGGGTTAT  50

seq1  CTTTGGCTTCTGATGTCTACATTACTGATATACCCAGTATTTCCTGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTTCTGATGTCTACATTACTGATATACCCAGTATTTCCTGGCAG  100

seq1  TATTCTGCAGTTTATGCTATTTAATATAATAATTTTATCCTGAAATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCAGTTTATGCTATTTAATATAATAATTTTATCCTGAAATAGAA  150

seq1  AATTTGAAAGTAGGTACTTTGATACTTATGGACTTGAGTTTTCCATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAAGTAGGTACTTTGATACTTATGGACTTGAGTTTTCCATGTTT  200

seq1  GATTACTTTGTTGCTGTGAGCTCTATTAAATACCATGTAAGTTTTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTTGTTGCTGTGAGCTCTATTAAATACCATGTAAGTTTTACAGT  250

seq1  TGCTTTTCCATTTCACTTCAAGTTTCTATCATGCAGTATTTGATGATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCCATTTCACTTCAAGTTTCTATCATGCAGTATTTGATGATTGA  300

seq1  ATTGAAGTTTGCTTTCTATAATTTAGTTATTTTCACAGAATAATTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTTTGCTTTCTATAATTTAGTTATTTTCACAGAATAATTCTGTT  350

seq1  CTTACATTAAAATGGAAAACCTTCCCATCTTTACTGTTTCTTTCAATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTAAAATGGAAAACCTTCCCATCTTTACTGTTTCTTTCAATGCT  400

seq1  TTCTTCAGTGTCATAAAGTATCAATGTAGAACTCTCTTACCTCCTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGTGTCATAAAGTATCAATGTAGAACTCTCTTACCTCCTTGATT  450

seq1  TTGTTTTTTCTGGCATTTTTTTTAAATGCTCCAGTGCAAAGGGGATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTCTGGCATTTTTTTTAAATGCTCCAGTGCAAAGGGGATGTTT  500

seq1  CCTGAGTTCTTCCATAATGTGTTCAGTTTAGAATTATACAAATAATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCTTCCATAATGTGTTCAGTTTAGAATTATACAAATAATACTG  550

seq1  AACATGGAATATTGATTTTGTAAAACATTGAATTTGAAATTTTTCTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAATATTGATTTTGTAAAACATTGAATTTGAAATTTTTCTACTG  600

seq1  TCAATTTAGGGCATTTTGCATATAGGTTAATATTTTCTGCAAACAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTAGGGCATTTTGCATATAGGTTAATATTTTCTGCAAACAGAGGT  650

seq1  AATTTTCTCCTTTTTTGTTTGAATCTTTTTTATGCCTTTCTATCTCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCCTTTTTTGTTTGAATCTTTTTTATGCCTTTCTATCTCAGGC  700

seq1  CTCTACCTAAAATTTTATCAATGAAGAAAGTGAACATCCTTGCCTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTAAAATTTTATCAATGAAGAAAGTGAACATCCTTGCCTTCTTC  750

seq1  TCAATTTACAATGAAATAATTTTACTTTTACTTTATTTAGGTAGTTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTACAATGAAATAATTTTACTTTTACTTTATTTAGGTAGTTGTTG  800

seq1  ATACATCATTTTATTCCTAATTTCTTCACTGCTTGGTTCACAAAGGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCATTTTATTCCTAATTTCTTCACTGCTTGGTTCACAAAGGATGT  850

seq1  TTCATTTTCTGTAGGCTTTTTTGGCATCAATGTAGAAGAGTATCATGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTGTAGGCTTTTTTGGCATCAATGTAGAAGAGTATCATGACC  900

seq1  TTGAACCTAAGTTTATTCATACACTCTATTGCATTTACTGATAAGCCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTAAGTTTATTCATACACTCTATTGCATTTACTGATAAGCCATT  950

seq1  GTTCCACAATTCTAGAATCCAAGTACTCAAACCAACTATCATGGTATTAT  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  GTTCCACAATTCTAGAATCC-AGTACTCAAACCAACTATCATGGTATTA-  998

seq1  TATTTAATGTGCTCCATTCTCAATGTTTTAATATAATATTTATAAATTCA  1050
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATTTAATGTGCTCCATTCTCAATGTTTTAATATAATATTTATAAA-TCA  1047

seq1  TCAATTTTGCCACATATATATCATAT-AGTTTGTTGATGGTCACCACTTA  1099
      |||| ||||||||| |||| |||||| |||||| ||||||||||||| ||
seq2  TCAA-TTTGCCACAAATATTTCATATAAGTTTG-TGATGGTCACCAC-TA  1094

seq1  TTTCGACTACTAAGCCCTTCAAGAGCCACTTCTAGATCTTATTCTAA  1146
      ||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  TTTCGACTACTAAGCCCTTCAAGAGCCAC-TCTAGATCTTTTTCTAA  1140

seq1: chr3_92618960_92619912
seq2: B6Ng01-054N07.g_69_1016 (reverse)

seq1  AAGTTCCCTCTTTCCTCATTCATTATACTCAGCTTCCATCATCTGTGACC  50
      |||||||||||||| |||| ||||||| ||||| ||||||||||||||||
seq2  AAGTTCCCTCTTTCATCATCCATTATA-TCAGC-TCCATCATCTGTGACC  48

seq1  TATAGTTGCCTCCTGGACATTCTATCCACTACATTCCCCTCCTATGTGC-  99
      |||||||||||||| |||| ||||||||||||||||||   |||||||| 
seq2  TATAGTTGCCTCCT-GACA-TCTATCCACTACATTCCC--TCTATGTGCT  94

seq1  TTCCAGGACACCCTATGCCTCCCATCCCAAAGTTCATAACACATACATTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACACCCTATGCCTCCCATCCCAAAGTTCATAACACATACATTA  144

seq1  TTTACATTGCTTATGATTGCATCTCCAACATCAATAATTTTCTGGCAGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTGCTTATGATTGCATCTCCAACATCAATAATTTTCTGGCAGTT  194

seq1  AGCCAAGTCCCAGTAAATAGCTATGACATGAGTGGATGTACTGATGCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTCCCAGTAAATAGCTATGACATGAGTGGATGTACTGATGCAAG  244

seq1  GTGATAAATAATCTTTTCCTTAATGGGAATAACTCCAGAGAAAAGGGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATAATCTTTTCCTTAATGGGAATAACTCCAGAGAAAAGGGGAA  294

seq1  AGATGTTAACTCAGCTCAAGATTCCTGTGGCAAAACATGAAGAGTATGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAACTCAGCTCAAGATTCCTGTGGCAAAACATGAAGAGTATGAC  344

seq1  AGGTAGATTAGGCAAAGCCTGGGTTCTTTCTAAGTCTGTTTATCTAGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATTAGGCAAAGCCTGGGTTCTTTCTAAGTCTGTTTATCTAGCTT  394

seq1  TACTTTCCAGATCAGAAACCCTCTTATTTAGGTAAATAAACTTGTGATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCAGATCAGAAACCCTCTTATTTAGGTAAATAAACTTGTGATGG  444

seq1  TCCCTGACAATGGAAAACACAAGAATCACCAATTATCACCCATTTTCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACAATGGAAAACACAAGAATCACCAATTATCACCCATTTTCCTG  494

seq1  GTTCATCTCAGTCACCACAATGCAGATGCTCTATAGAACTAGTCATCCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTCAGTCACCACAATGCAGATGCTCTATAGAACTAGTCATCCAA  544

seq1  AACACAGGACTAATCCATGGCCATGGACCAAATCTGCTCACCATCCAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGACTAATCCATGGCCATGGACCAAATCTGCTCACCATCCAACT  594

seq1  ACACCTCCAAACATCATCAAAGTATCTGCATGCACACAGGATGTCTTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCAAACATCATCAAAGTATCTGCATGCACACAGGATGTCTTTTG  644

seq1  GTTACTAGCATCGGCTACATCCACTCCATTAGTGACTCCCATTACAGGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAGCATCGGCTACATCCACTCCATTAGTGACTCCCATTACAGGTT  694

seq1  TAGAAACCTGGAAGCAGTCCTGAGGCAGAGTTTCATGGAAATTTAGCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCTGGAAGCAGTCCTGAGGCAGAGTTTCATGGAAATTTAGCCTC  744

seq1  CCGGAGGAGGCTTTCATTAGCATTCCAATAGCACATATACTCAAAACCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGGAGGCTTTCATTAGCATTCCAATAGCACATATACTCAAAACCTA  794

seq1  TCCCTGCATTAGTCTGGTATATGGATCTGTGTGCTCGCTTTCAGTATTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCATTAGTCTGGTATATGGATCTGTGTGCTCGCTTTCAGTATTGT  844

seq1  TTTATTATAAGTGCCTTTAAGGATTGATTTTGATATATAGATAAGACTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATAAGTGCCTTTAAGGATTGATTTTGATATATAGATAAGACTCC  894

seq1  ACCAGTGTTTCAATGTTCTAGAAAGTCCCTGAGCCAACCCTGAGCTTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTTTCAATGTTCTAGAAAGTCCCTGAGCCAACCCTGAGCTTGGA  944

seq1  ATTC  953
      ||||
seq2  ATTC  948