BAC Information

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BAC

Clone NameB6Ng01-055B19
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,224 - 41,059,7229,804,648 - 9,805,746
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055B19.bB6Ng01-055B19.g
ACCDH877666DH877667
length9701,096
definitionDH877666|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B19, 5' end.DH877667|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,722)(9,804,648 - 9,805,746)
sequence
gaattgtttgttcaggtctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgtgttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcttttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaagttttgcagtttca
tgaggtcccatttgtcaattctagatcttatagcacaagccattgctgtt
ctattcaggaatttctctcctgtgcccatatctaaaaggtttttccccac
tttctcctctaaaagtttcagtgtctctggttttatgtgaagttccttga
tccacttcgatttgaccttagtacaaggagataggaatggatcaatttgt
attcttctacatgataacaaccagttgtgccagcactatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattga
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tcagtagcaaagctttaggtcaggcatggtgattccaccagaggatcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagatggctctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccatat
ttacaatgttgatcctgtcaatccatgagcatgggagatctttccatctt
ctgagttcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttaacttccttagttagagtcacaccagatattttatattatt
tgtgactattgagtagggtg
gaattcttaacatcatgtctctttggaagactttgatagctattaagaaa
gttaatggatgtggttggacttatgcttatgtcaatcttggtagttccag
gatacttactattcagaaacatgataggccttctgctaagggctaccacc
agaagtagaaaaatagcagcaagacagaatggaagaggccatggaaaatt
gagtctggcatggtggtagaaggaatcttatgccttgactgactgccagt
cagagtgtttcattatttataccaatctcagaaagcagagatttgttcac
tctgttcaaaaatttaaagcatattatttctgtcccccgataggagttat
ctttatcttggttataagattaaattatcattggtaaactatgaaataat
agaattatggtggtgttataagtttagtcatcagagataaactgtgatga
aatcacagaaataaattttatcaacattttctctataacccagcttttaa
atatctggattttttttttttttgcaaaggcatgagataccattcttagc
ctggctattcatgacattttagtgactagaaaggatgaaaactccaatcc
agtatgtggagtttgccatttgactacctgtgagtgtataactaactatt
tagagtcagaatttaaattggcattagatctctgacaaagaattcaggcc
catactgctacagctatagtaagtcattttctttaataatataataattc
tatatctctgtggaatttattgctatgtcttatcttgttttgttttgttt
tgtttgttttttaattttcggttgtttccatgtcataagataaaagatta
gaacttcacaagtgaacttctctaaagaaagaggggttatggaaatcttg
agacatcattctttcatatttttctacactattatttatccatcattata
ggcactttgtatgtaggaaatactccatccaatctaactttgtttcttta
tgtttttcctcaagaggttcaacttatgagtttgaattatttgccttata
ttacctggatattagtaaggaaaagttttcttatctgaattgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059722
seq2: B6Ng01-055B19.b_60_559 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGGAAGAAAGACAGCATTTTCAACAAATAGTGCTGGCACAACTGGTTGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||||||||||||||| | |||||||||| ||||||||||||||||||||
seq2  TATCATGTAGAAGAATACAAATTGATCCATTCCTATCTCCTTGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      |||||||| ||||||||||||||||  |||||||||||||||||||||||
seq2  GTCAAATCGAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||| ||||||||||||||||||||| ||||  |||||||| |||||| |
seq2  ACTTTTAGAGGAGAAAGTGGGGAAAAACCTTTTAGATATGGGCACAGGAG  250

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      | ||||||||| ||||||||||||||||||||||| ||||||  ||||| 
seq2  AGAAATTCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATCTAGAATT  300

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACAAATGGGACCTCATGAAACTGCAAAACTTCTGCAAGGCAAAAGACAC  350

seq1  CGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCT  399
      | ||||||||||||||||  |||||||||||||||||| |||||||||||
seq2  CATCAATAAGACAAAAAGACCACCAACAGATTGGGAAAAGATCTTTACCT  400

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACACAAG  450

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  500

seq1: chr7_9804648_9805746
seq2: B6Ng01-055B19.g_67_1162

seq1  GAATTCTTAACATCATGTCTCTTTGGAAGACTTTGATAGCTATTAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACATCATGTCTCTTTGGAAGACTTTGATAGCTATTAAGAAA  50

seq1  GTTAATGGATGTGGTTGGACTTATGCTTATGTCAATCTTGGTAGTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGATGTGGTTGGACTTATGCTTATGTCAATCTTGGTAGTTCCAG  100

seq1  GATACTTACTATTCAGAAACATGATAGGCCTTCTGCTAAGGGCTACCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTACTATTCAGAAACATGATAGGCCTTCTGCTAAGGGCTACCACC  150

seq1  AGAAGTAGAAAAATAGCAGCAAGACAGAATGGAAGAGGCCATGGAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGAAAAATAGCAGCAAGACAGAATGGAAGAGGCCATGGAAAATT  200

seq1  GAGTCTGGCATGGTGGTAGAAGGAATCTTATGCCTTGACTGACTGCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGCATGGTGGTAGAAGGAATCTTATGCCTTGACTGACTGCCAGT  250

seq1  CAGAGTGTTTCATTATTTATACCAATCTCAGAAAGCAGAGATTTGTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTTTCATTATTTATACCAATCTCAGAAAGCAGAGATTTGTTCAC  300

seq1  TCTGTTCAAAAATTTAAAGCATATTATTTCTGTCCCCCGATAGGAGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAAAAATTTAAAGCATATTATTTCTGTCCCCCGATAGGAGTTAT  350

seq1  CTTTATCTTGGTTATAAGATTAAATTATCATTGGTAAACTATGAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTTGGTTATAAGATTAAATTATCATTGGTAAACTATGAAATAAT  400

seq1  AGAATTATGGTGGTGTTATAAGTTTAGTCATCAGAGATAAACTGTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATGGTGGTGTTATAAGTTTAGTCATCAGAGATAAACTGTGATGA  450

seq1  AATCACAGAAATAAATTTTATCAACATTTTCTCTATAACCCAGCTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGAAATAAATTTTATCAACATTTTCTCTATAACCCAGCTTTTAA  500

seq1  ATATCTGGATTTTTTTTTTTTTTGCAAAGGCATGAGATACCATTCTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGATTTTTTTTTTTTTTGCAAAGGCATGAGATACCATTCTTAGC  550

seq1  CTGGCTATTCATGACATTTTAGTGACTAGAAAGGATGAAAACTCCAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATTCATGACATTTTAGTGACTAGAAAGGATGAAAACTCCAATCC  600

seq1  AGTATGTGGAGTTTGCCATTTGACTACCTGTGAGTGTATAACTAACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGGAGTTTGCCATTTGACTACCTGTGAGTGTATAACTAACTATT  650

seq1  TAGAGTCAGAATTTAAATTGGCATTAGATCTCTGACAAAGAATTCAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCAGAATTTAAATTGGCATTAGATCTCTGACAAAGAATTCAGGCC  700

seq1  CATACTGCTACAGCTATAGTAAGTCATTTTCTTTAATAATATAATAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCTACAGCTATAGTAAGTCATTTTCTTTAATAATATAATAATTC  750

seq1  TATATCTCTGTGGAATTTATTGCTATGTCTTATCTTGTTTTGTTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCTGTGGAATTTATTGCTATGTCTTATCTTGTTTTGTTTTGTTT  800

seq1  TGTTTTGTTTTTTTAATTTTCGGTTGTTTCCATGTCATAAGATAAAAGAT  850
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTT--GTTTTTTAATTTTCGGTTGTTTCCATGTCATAAGATAAAAGAT  848

seq1  TAGAACTTCACAAGTGAACTTCTCT-AAGAAAGAGGGGTTATGGAAATC-  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  TAGAACTTCACAAGTGAACTTCTCTAAAGAAAGAGGGGTTATGGAAATCT  898

seq1  TGAGACATCATTCTTTCATATTTTTCTACACTATTATTTATCCATCATTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCATTCTTTCATATTTTTCTACACTATTATTTATCCATCATTA  948

seq1  TAAGACACTTTGTATGTAGGAGATAACTCCATCCAATCTAACTTTGTTTC  998
      | || |||||||||||||||| || |||||||||||||||||||||||||
seq2  T-AGGCACTTTGTATGTAGGAAAT-ACTCCATCCAATCTAACTTTGTTTC  996

seq1  TGTATG-TTTTCCTCAAGAGGTACAACTTATGAGTCTGATTTATTTTGCC  1047
      | |||| ||||||||||||||| |||||||||||| ||| ||| ||||||
seq2  TTTATGTTTTTCCTCAAGAGGTTCAACTTATGAGTTTGAATTA-TTTGCC  1045

seq1  CTATAATTACCTGGATATATAGT-AGGAAAAGTTTTCTAATCTGATTTGC  1096
       ||| ||||||||||||| |||| |||||||||||||| |||||| ||||
seq2  TTAT-ATTACCTGGATAT-TAGTAAGGAAAAGTTTTCTTATCTGAATTGC  1093

seq1  TGA  1099
      |||
seq2  TGA  1096