BAC Information

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BAC

Clone NameB6Ng01-055E22
Chromosome3 (Build37)
Map Location 117,338,441 - 117,507,404
singlet/doubletdoublet
Overlap gene4833424O15Rik, EG668759, Snx7
Upstream geneHiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneLOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055E22.bB6Ng01-055E22.g
ACCDH877794DH877795
length1,118926
definitionDH877794|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E22, 5' end.DH877795|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,506,281 - 117,507,404)(117,338,441 - 117,339,325)
sequence
gaattccaaatccactgagcatcttaggagaagagcatctcattaggctc
tgctttcatggagcattaccgtgatgcagtgcataccattctttgacttg
cctgtcttgtgcttcttcttaagcaatgttcttttgaaattaaagtcaca
agaagatgattcattgtgcagaaatattctcactttccccttttccaact
gaaataatgaactcatcaagaataacaacaacagcagcaaactgcagcaa
ggaaaacatcaagaattgatcatagttattcaaagtatatgtgtcatctt
ccatactggtcatgacagagtgagaaatagcactggtgactgaagtaaga
cccgggcattgacagaagaaccacacagtgccagagaccaaagtagcaga
agaggaccggatgctccgtgtctcctgtagcagtcaatactaatggtgtg
atattcttggtaatgatggtcaaggaccaacatctaatatgcaaattgtt
agacactatgtgagtcagtgttttgcatttcatgtggttttttttgaatc
tctatgaaaggaatgctattatttttatgtttgttttatggatggaagac
ttagggcttcaatcaggagcattacaatatcacataggttataaaaggta
gtagcaggactcaactggaagtcaaacccactcccaaccctctttgtcct
gatgctacatgttgagactcctgaatttgtccctgagtttagaagacaac
ttctctttataactgcagcatcccttggacagagctaaccatcatcaacc
caactctgtttaaagggttttaatgcaacagtgtacagagttacaaaggg
gtgattttgctgaaacttgatcatagcagtggtaacattttaccttcata
ggaaggcaagaagacaaaatctagagtgagatactgtgtctctcaagtca
gtttctggagagccctaaggcagccattcatgcaagtttatagtactgca
taactgaaagctagcagagagagtatgctcaacagttggtggggtagacc
atgaacctaattttttgtttaaaatcgtgaccccggagcttcttgacttc
tgcgtgcatatgtatcaa
gaattcttctctgggcagaaatttctgccatttgctaagcgtagtaatgg
tttcatttgtgtgcttttgctttcacatccactcagcctgccatggttcc
attgccttcacaatcttccagaattccatgccactctgtgctctggttgg
ggctgtgcactgcaattgattgagagtaattttgccaggctgagtcaggc
aaaaagaatgtaaaaggacaggatgaaaaactaatctcagcaaatgagag
ggagccactgagaccagagagaggccagcaagaatcaacccataggaaag
atgagatgaacagtgctggaactgtacagcctgggtaccactgctaccaa
taaggcaatgcttctacctagtctgggtaccactgctacacacaagtcag
cgcttctacctagccaaggtatcattgctagccataagtcagtgcttcga
cctctcctagtgccttcaggctggccaaagaagcagatgcttctctgtat
ctgccccatgtcagccacaggaacaactgagtttgaatgatgtgctggga
aaccatctgtcagggcactcaggaagaccatacccaatgatttttgttct
ggtggtagatcattgcttcccatccaataggctatatgcatgaaagaaat
tttcttttttttttttttccattttttattaggtatttaactcatttaca
tttccaatgctataccaaaagtcccccatatccacccacccccactcccc
tgcccacccactccccctttttggccctgggtttcccctgtactggggca
tataaagtttgcaagtccaatgggcctctctttccagtgatggccgactt
aggccatcttttatatatatgcagctaggagtcaaggagttcgggggact
gggttagctcataatgttgttccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117506281_117507404
seq2: B6Ng01-055E22.b_43_1160 (reverse)

seq1  TTGATACATATGCA-GCTAGAGTCAAG-AGCTCCGGGGTACAGATTTTAA  48
      |||||||||||||| ||   ||||||| |||||||||||   ||||||||
seq2  TTGATACATATGCACGCAGAAGTCAAGAAGCTCCGGGGTCACGATTTTAA  50

seq1  ACAAATATTTAGGGTCCATTGGTCTA-CCCACCAACTG-TGAGCATACTC  96
      ||||| | ||||| ||   ||||||| ||||||||||| |||||||||||
seq2  ACAAAAAATTAGGTTC--ATGGTCTACCCCACCAACTGTTGAGCATACTC  98

seq1  TCTTCTGCTTAGCTTTTCAGTTTATGCAGTACTATATACTTGCATGGAAT  146
      || ||||| |||| |||||| ||||||||||||||| |||||||| ||||
seq2  TC-TCTGC-TAGC-TTTCAG-TTATGCAGTACTATAAACTTGCAT-GAAT  143

seq1  GGCTGGCCTTAGGGCTCTCCAGAAACTGACTTGAGGAGACACAGTATCTC  196
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCT-GCCTTAGGGCTCTCCAGAAACTGACTTGA-GAGACACAGTATCTC  191

seq1  ACTCTTAGATTTTGTCTTCTTGCCTTCCTATGAAGGTTAAAATGTTACCA  246
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTC-TAGATTTTGTCTTCTTGCCTTCCTATGAAGG-TAAAATGTTACCA  239

seq1  CTGCTATGATCAAGTTTCAGCAAAATCA-CCCTTTGTAACTCTGTACACT  295
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGCTATGATCAAGTTTCAGCAAAATCACCCCTTTGTAACTCTGTACACT  289

seq1  GTTGCATTAAAACCCTTTAAACAGAGTTGGGTTGATGATGGTTAGCTCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTAAAACCCTTTAAACAGAGTTGGGTTGATGATGGTTAGCTCTG  339

seq1  TCCAAGGGATGCTGCAGTTATAAAGAGAAGTTGTCTTCTAAACTCAGGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGATGCTGCAGTTATAAAGAGAAGTTGTCTTCTAAACTCAGGGA  389

seq1  CAAATTCAGGAGTCTCAACATGTAGCATCAGGACAAAGAGGGTTGGGAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAGGAGTCTCAACATGTAGCATCAGGACAAAGAGGGTTGGGAGT  439

seq1  GGGTTTGACTTCCAGTTGAGTCCTGCTACTACCTTTTATAACCTATGTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGACTTCCAGTTGAGTCCTGCTACTACCTTTTATAACCTATGTGA  489

seq1  TATTGTAATGCTCCTGATTGAAGCCCTAAGTCTTCCATCCATAAAACAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAATGCTCCTGATTGAAGCCCTAAGTCTTCCATCCATAAAACAAA  539

seq1  CATAAAAATAATAGCATTCCTTTCATAGAGATTCAAAAAAAACCACATGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAATAATAGCATTCCTTTCATAGAGATTCAAAAAAAACCACATGA  589

seq1  AATGCAAAACACTGACTCACATAGTGTCTAACAATTTGCATATTAGATGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAACACTGACTCACATAGTGTCTAACAATTTGCATATTAGATGT  639

seq1  TGGTCCTTGACCATCATTACCAAGAATATCACACCATTAGTATTGACTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTGACCATCATTACCAAGAATATCACACCATTAGTATTGACTGC  689

seq1  TACAGGAGACACGGAGCATCCGGTCCTCTTCTGCTACTTTGGTCTCTGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGACACGGAGCATCCGGTCCTCTTCTGCTACTTTGGTCTCTGGC  739

seq1  ACTGTGTGGTTCTTCTGTCAATGCCCGGGTCTTACTTCAGTCACCAGTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGGTTCTTCTGTCAATGCCCGGGTCTTACTTCAGTCACCAGTGC  789

seq1  TATTTCTCACTCTGTCATGACCAGTATGGAAGATGACACATATACTTTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCACTCTGTCATGACCAGTATGGAAGATGACACATATACTTTGA  839

seq1  ATAACTATGATCAATTCTTGATGTTTTCCTTGCTGCAGTTTGCTGCTGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATGATCAATTCTTGATGTTTTCCTTGCTGCAGTTTGCTGCTGTT  889

seq1  GTTGTTATTCTTGATGAGTTCATTATTTCAGTTGGAAAAGGGGAAAGTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTCTTGATGAGTTCATTATTTCAGTTGGAAAAGGGGAAAGTGA  939

seq1  GAATATTTCTGCACAATGAATCATCTTCTTGTGACTTTAATTTCAAAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTCTGCACAATGAATCATCTTCTTGTGACTTTAATTTCAAAAGA  989

seq1  ACATTGCTTAAGAAGAAGCACAAGACAGGCAAGTCAAAGAATGGTATGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTTAAGAAGAAGCACAAGACAGGCAAGTCAAAGAATGGTATGCA  1039

seq1  CTGCATCACGGTAATGCTCCATGAAAGCAGAGCCTAATGAGATGCTCTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCACGGTAATGCTCCATGAAAGCAGAGCCTAATGAGATGCTCTTC  1089

seq1  TCCTAAGATGCTCAGTGGATTTGGAATTC  1124
      |||||||||||||||||||||||||||||
seq2  TCCTAAGATGCTCAGTGGATTTGGAATTC  1118

seq1: chr3_117338441_117339325
seq2: B6Ng01-055E22.g_68_953

seq1  GAATTCTTCTCTGGGCAGAAATTTCTGCCATTTGCTAAGCGTAGTAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTGGGCAGAAATTTCTGCCATTTGCTAAGCGTAGTAATGG  50

seq1  TTTCATTTGTGTGCTTTTGCTTTCACATCCACTCAGCCTGCCATGGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGTGTGCTTTTGCTTTCACATCCACTCAGCCTGCCATGGTTCC  100

seq1  ATTGCCTTCACAATCTTCCAGAATTCCATGCCACTCTGTGCTCTGGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTCACAATCTTCCAGAATTCCATGCCACTCTGTGCTCTGGTTGG  150

seq1  GGCTGTGCACTGCAATTGATTGAGAGTAATTTTGCCAGGCTGAGTCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCACTGCAATTGATTGAGAGTAATTTTGCCAGGCTGAGTCAGGC  200

seq1  AAAAAGAATGTAAAAGGACAGGATGAAAAACTAATCTCAGCAAATGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATGTAAAAGGACAGGATGAAAAACTAATCTCAGCAAATGAGAG  250

seq1  GGAGCCACTGAGACCAGAGAGAGGCCAGCAAGAATCAACCCATAGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCACTGAGACCAGAGAGAGGCCAGCAAGAATCAACCCATAGGAAAG  300

seq1  ATGAGATGAACAGTGCTGGAACTGTACAGCCTGGGTACCACTGCTACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGAACAGTGCTGGAACTGTACAGCCTGGGTACCACTGCTACCAA  350

seq1  TAAGGCAATGCTTCTACCTAGTCTGGGTACCACTGCTACACACAAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAATGCTTCTACCTAGTCTGGGTACCACTGCTACACACAAGTCAG  400

seq1  CGCTTCTACCTAGCCAAGGTATCATTGCTAGCCATAAGTCAGTGCTTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCTACCTAGCCAAGGTATCATTGCTAGCCATAAGTCAGTGCTTCGA  450

seq1  CCTCTCCTAGTGCCTTCAGGCTGGCCAAAGAAGCAGATGCTTCTCTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTAGTGCCTTCAGGCTGGCCAAAGAAGCAGATGCTTCTCTGTAT  500

seq1  CTGCCCCATGTCAGCCACAGGAACAACTGAGTTTGAATGATGTGCTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCATGTCAGCCACAGGAACAACTGAGTTTGAATGATGTGCTGGGA  550

seq1  AACCATCTGTCAGGGCACTCAGGAAGACCATACCCAATGATTTTTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTGTCAGGGCACTCAGGAAGACCATACCCAATGATTTTTGTTCT  600

seq1  GGTGGTAGATCATTGCTTCCCATCCAATAGGCTATATGCATGAAAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGATCATTGCTTCCCATCCAATAGGCTATATGCATGAAAGAAAT  650

seq1  TTTCTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACA  700

seq1  TTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCC  750

seq1  TGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCA  800
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TGCCCACCCACTCCCCCTTTTTGGCCCTGGGTTTCCCCTGTACTGGGGCA  800

seq1  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGAC-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTT  850

seq1  AGGCCATCTTTTGATATATATGCAGCTA-GAGTCAAG  885
      |||||||||||| ||||||||||||||| ||||||||
seq2  AGGCCATCTTTT-ATATATATGCAGCTAGGAGTCAAG  886