BAC Information

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BAC

Clone NameB6Ng01-055F10
Chromosome3 (Build37)
Map Location 26,613,959 - 26,615,155
singlet/doubletsinglet
Overlap geneSpata16
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055F10.bB6Ng01-055F10.g
ACCDH877816DH877817
length1,2281,148
definitionDH877816|Mus musculus domesticus DNA, BAC clone: B6Ng01-055F10, 5' end.DH877817|Mus musculus domesticus DNA, BAC clone: B6Ng01-055F10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaatgaacttggattataggaaggacgggctccaatcagata
tattgagggcagagagctcttgagaaaatcaaatggcaagaggcaagata
aagaacagaagcaacagaaaccaaggttacttggcatcatcaagactaaa
ctctcccaccatagtaagtcctggatacactatcacaccagaaaagcaag
atacggatccaaagtcacatctcatgatgatgatggaggactttaagaag
gaaataaatagctcccttaaagaaatacaggagaacacaggtaaacagct
ggaagcccttaaacagtaaacacaaaaatcccttagagaattagaggaaa
aaaactaccaaacaggtgaaagaattgaacaaaaccatccaggatctaaa
aatggaagtagaaacaataaaaaaatcacaaagggagacaactctagaga
tagaagtcctaggaaagaaatcagaaacaataactgtgagcatcagcaac
agaatagaagagatggaagacagaatctcaggtgcagaaggtttcataga
aaacatggacacaaaaatcaaagaaaattcaaaatgcaaaaaagatacta
actcaaaacatccaggaaatccaggacacaatgagaggatcaaacctacg
gataataggagtagatgagaatgaagactttcaacttaaagggccaataa
atatcttcaacaaaattatagaagaaaacttccataacctaaaaagagag
atgctcatgaacatacaagaagccctcagaactccaaatagacttgacca
gaaaagaaattcctcccgacacataatcagaacaacaaatgcaataaata
aagacagaatattaaaagcagtaagggataaaggttaagtaacatataaa
ggcaggatatcagaattacaccagacttttcacagagactatgaaagcca
gaagattctggacagatggtataagacactaagagaacacaatgcaaccc
aagctactatacccagcaaatctagatctagatctagatctgctttgagt
catagttgcctgcacctcagttttcactgttctagcatctgcaaacatct
gagctttcctatgaaatagctcctcttaaggtcaagtgagggccctcaga
cctctcacgcacgtgacttgcttgctaagcatcctactaaagaaattgaa
cttcgacattgcattttgtgtgcccaac
gaattccaccctccaggacaccggcaaattgttttattggaaaactttcc
atgttcaaataatggtaagcgtccctgcagggctgcccaatgtgcagagc
actcagacacatattgaaaatgtcagaagggatgagatgacatgcaatct
tctacaaactgactttgaacacagacatctactcacttcaactttttaaa
aagaatacaaaaagtttatataattcatcttaggaaatagtgtcctaaga
caacttctctgtttcgttttagttctaatagagctagcatctggtgaaca
gcccagtttggagagaaatgtttctggaaaggatttgaagagaggaccta
gggggttgaggacatcacaccacagacaggagccctgtgctactggcctg
agctagaacactcagctccaatttatatgtcacgttaccaagttacttcc
aagttattcaaatctggtagcatctcatcatcttctaaaatttctcctta
agcacgtcagagatgtatgtatgtatgtaaagggtactatatttgtgtat
atctagctttttctgtagccatgaaagaatgtaattctgaggtcatttaa
tccttactgttacatcaggcatgaatctagttggtataaaattaacaaca
tcaccaatggattatttgccttctgaggatgtatgtttaaattaacacct
tggttttatgctgtgctgaagaacaccttttgaaaaacatctatgagggc
taggagagttttggctcactgaaaaatatttttttacacctaaaattttt
tatgcaatgttgtaaatctgcaaaaagtcattttaacagctgagattttt
atggccactcaggataataaaagttgagaatatattatattatgtaaatg
agagaatatatagtcatatatgactttaaaagggaactcgctctaaaaca
gacaaggggaatattcactggtctttcaggaaaattcagcatgtttagcc
gatactaagcctctttcactgatcctaaaacccaaagcttgatcttccgc
tatagaacagtgattccccatgacctaataacgccagcctccgatgaagg
tctgccaagacactaaggtgacccgcaccataagtgcatgagaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26613959_26615155
seq2: B6Ng01-055F10.g_68_1215 (reverse)

seq1  AATCTTCTCATGTGCATCTTTAATGGTGCGGGGTTAACCCCTAAGATGCT  50
      ||||||||||  |||| |||  ||||||||||     | ||| ||   ||
seq2  AATCTTCTCA--TGCA-CTT--ATGGTGCGGG----TCACCTTAGTGTCT  41

seq1  TGCCAGGAACTGTACATTC--TGAAGGCTGTGCTGTAATTAAGGGCCATG  98
      || |||       || |||   | |||||| || || ||||  || ||| 
seq2  TGGCAG-------ACCTTCATCGGAGGCTG-GC-GTTATTA--GGTCAT-  79

seq1  GGGGGAATCACTGTTTCCTATAGCCGGAAGATCACATGCCTTTGGGTTTT  148
       ||||||||||||||  |||||| ||||||||||     |||||||||||
seq2  -GGGGAATCACTGTT--CTATAG-CGGAAGATCA---AGCTTTGGGTTTT  122

seq1  AGGATACAGTGAAAAGAGGCTTATGGTATCGGCTAAAACATGCTGACATT  198
      ||||| ||||| |||||||||||  ||||||||| ||||||||||| |||
seq2  AGGAT-CAGTG-AAAGAGGCTTA--GTATCGGCT-AAACATGCTGA-ATT  166

seq1  TTCCCTGAAAGACCAGTGAATAATTCCCCCTTGTTCTGTTTTTAAGAGCG  248
      || |||||||||||||||||||  | ||||||| ||||||||  ||||||
seq2  TT-CCTGAAAGACCAGTGAATA--TTCCCCTTG-TCTGTTTT--AGAGCG  210

seq1  AGTTCCCTTTTTAAAGTCATAATATTGACTAATATATTCTCCTCATTTAC  298
      ||||||| |||||||||||| ||| ||||| ||||||||| |||||||||
seq2  AGTTCCC-TTTTAAAGTCAT-ATA-TGACT-ATATATTCT-CTCATTTAC  255

seq1  ATAATATAATATATTCTTCAAACTTTTTATTATCCCTGAGTGGCCATAAA  348
      |||||||||||||||| ||||   ||||||||| ||||||||||||||||
seq2  ATAATATAATATATTC-TCAA--CTTTTATTAT-CCTGAGTGGCCATAAA  301

seq1  AATCTCAGCTGTTTAAAATGACTTTTTTGCAGATTTACAACATTGCATAA  398
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  AATCTCAGCTG-TTAAAATGAC-TTTTTGCAGATTTACAACATTGCATAA  349

seq1  AAAATTTTAGGTGTAAAAAAATATTTTTCAGTGAGCCAAAACTCTCCTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAGGTGTAAAAAAATATTTTTCAGTGAGCCAAAACTCTCCTAG  399

seq1  CCCTCATAGATGTTTTTCAAAAGGTGTTCTTCAGCACAGCATAAAACCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATAGATGTTTTTCAAAAGGTGTTCTTCAGCACAGCATAAAACCAA  449

seq1  GGTGTTAATTTAAACATACATCCTCAGAAGGCAAATAATCCATTGGTGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAATTTAAACATACATCCTCAGAAGGCAAATAATCCATTGGTGAT  499

seq1  GTTGTTAATTTTATACCAACTAGATTCATGCCTGATGTAACAGTAAGGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAATTTTATACCAACTAGATTCATGCCTGATGTAACAGTAAGGAT  549

seq1  TAAATGACCTCAGAATTACATTCTTTCATGGCTACAGAAAAAGCTAGATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACCTCAGAATTACATTCTTTCATGGCTACAGAAAAAGCTAGATA  599

seq1  TACACAAATATAGTACCCTTTACATACATACATACATCTCTGACGTGCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATATAGTACCCTTTACATACATACATACATCTCTGACGTGCTT  649

seq1  AAGGAGAAATTTTAGAAGATGATGAGATGCTACCAGATTTGAATAACTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAATTTTAGAAGATGATGAGATGCTACCAGATTTGAATAACTTG  699

seq1  GAAGTAACTTGGTAACGTGACATATAAATTGGAGCTGAGTGTTCTAGCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACTTGGTAACGTGACATATAAATTGGAGCTGAGTGTTCTAGCTC  749

seq1  AGGCCAGTAGCACAGGGCTCCTGTCTGTGGTGTGATGTCCTCAACCCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTAGCACAGGGCTCCTGTCTGTGGTGTGATGTCCTCAACCCCCT  799

seq1  AGGTCCTCTCTTCAAATCCTTTCCAGAAACATTTCTCTCCAAACTGGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCTCTTCAAATCCTTTCCAGAAACATTTCTCTCCAAACTGGGCT  849

seq1  GTTCACCAGATGCTAGCTCTATTAGAACTAAAACGAAACAGAGAAGTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCAGATGCTAGCTCTATTAGAACTAAAACGAAACAGAGAAGTTGT  899

seq1  CTTAGGACACTATTTCCTAAGATGAATTATATAAACTTTTTGTATTCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACACTATTTCCTAAGATGAATTATATAAACTTTTTGTATTCTTT  949

seq1  TTAAAAAGTTGAAGTGAGTAGATGTCTGTGTTCAAAGTCAGTTTGTAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTTGAAGTGAGTAGATGTCTGTGTTCAAAGTCAGTTTGTAGAA  999

seq1  GATTGCATGTCATCTCATCCCTTCTGACATTTTCAATATGTGTCTGAGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCATGTCATCTCATCCCTTCTGACATTTTCAATATGTGTCTGAGTG  1049

seq1  CTCTGCACATTGGGCAGCCCTGCAGGGACGCTTACCATTATTTGAACATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACATTGGGCAGCCCTGCAGGGACGCTTACCATTATTTGAACATG  1099

seq1  GAAAGTTTTCCAATAAAACAATTTGCCGGTGTCCTGGAGGGTGGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTTCCAATAAAACAATTTGCCGGTGTCCTGGAGGGTGGAATTC  1148