BAC Information

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BAC

Clone NameB6Ng01-055G15
Chromosome3 (Build37)13 (Build37)
Map Location 41,058,716 - 41,059,39766,411,704 - 66,412,889
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055G15.bB6Ng01-055G15.g
ACCDH877868DH877869
length1,0111,166
definitionDH877868|Mus musculus domesticus DNA, BAC clone: B6Ng01-055G15, 5' end.DH877869|Mus musculus domesticus DNA, BAC clone: B6Ng01-055G15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,716 - 41,059,397)(66,411,704 - 66,412,889)
sequence
gaattccttgatccacgtagacttgagctttgtacaaggagacaagaatg
aatcattttcattccttctacataactgccagttgtacctgcaccatttg
ttgaaaatgctgtctttttttccactggattgttttagctcccttgtcaa
tgatcaagtgaccataggtgtgtgagttcatctctgggtcttcaattcta
ttccatttgatctacttgtctgtcactataccagtaccatgcagttttta
tcacaattgctctgtagtacagcttcaggtcaggcatggtgattccatca
gaggttcttttatcattgagaatagcttttgctatcctaggttttttgct
atttcagatgaatttgcagatttccctttctaattcgatgaagaattgag
ttggaattttgatggagattgcattgaatctgtagattgattttggtaag
atagccatttttactatatggatcctgccaatccatgagcatgggagatc
tttccatcttctgagatcttcctttatttatttcttcagagacttgaagt
tcttaccatacagatctttcactttcttagttagagtcacaccaaggcat
ttcatattatttgtgactattgtgaagggtgctgtttccctaatttcttt
ctcatcctctttatcctttgtgtagagaaaggccttggcttcactcaata
tactgtgaccaaggtacataagtaaataaacacttttctcacatgtttct
ttggctatggtggtttttacagcaacagaatctaagacatcacctaaatg
gtaaattgcctctgttgggatttggaatctcatagcttcctgatgcaata
aaaggcactgatttgaaaagagaaacaagaatgaatgttagcagagtgtg
aagcaccatgacagtaatgcatatgatagcacagaagtgctgaactttgg
gatagctttccaatgtactagggagatgctagaataccagatacatacaa
gacgggaacat
gaattccaggttcttggataacccacttgccactttcgttgtggcaggaa
agaagatgttgatactatgaaaaagaggactaggaaggcagatgagagaa
aagagagaagctaattttacatagcacagcaaattctttgccctaactct
gagtctaaccctaaccctgatatttcttctttatgtaatagagatcctag
agattcaatgggatataagaataatagtggccacctcaagcctacccctg
agcctaaccctgatttatcctaaactgttaaccctatcttaaacctcaca
ccttaatttcctaaccaccctaaccctaatcctaaccacccttatcctaa
tcctaaccataaccctctgatcgcctaatcctaactccagtcctgcttac
tgtgggggatatctcttaatatataatatttcttaattatacctttgaat
tgagaaactcttgcttaatcttgatcttttgagatgttcagatccacctt
taatctaggcaatagattctttaggcatcctgcatatatgaaagacattg
aacagggtagtgctttcagttttttcttacgtgccattcttttttataaa
acaaaggtgatttgctcgtgtgatttttataactggcattaaaaagtact
tatttctttagaattctggtacatcatctataataacccgcagcaggaaa
tcaaccagtccttgatttttctactttctgttggctgagagcctttattg
ggacattctattaaatttcctttctgtctacatagagagattcattctat
gatttgagatatgtttatctagaaaacctgtactaatccaaatgtggttt
ttctctatttcgccactgatgaagatgtgctgtctattaagagggcacaa
cagtgttttccttatgtttctggcttctctcccagggttgtttgatgcct
atcatctggtgaaagggagccgtgatttcctgagcccacacaagccacaa
atcaaaactcttgttcctaaatcctctttaatgtaattgcctaggcatcc
tcaactcgtggtcagattgatactacactgcactgagtatggcctaggag
ccattcaccttgattcaagaagagaaggcaagtactggaggaaagctcaa
gcagtctgaagtcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058716_41059397
seq2: B6Ng01-055G15.b_38_718 (reverse)

seq1  GGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA  50
      ||||||||||||||||||| ||||| ||| ||||||||||||||||||||
seq2  GGCCTTTCTCTACACAAAGGATAAAGAGGATGAGAAAGAAATTAGGGAAA  50

seq1  CAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCATGACT  100
      || |||||||| ||||||||||||||||||| ||||  |||||  |||||
seq2  CAGCACCCTTCACAATAGTCACAAATAATATGAAATGCCTTGGTGTGACT  100

seq1  CTAACTAAGGAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTCTGAA  150
      ||||||||| ||||||||||||||||||  ||||||||||||||||||||
seq2  CTAACTAAGAAAGTGAAAGATCTGTATGGTAAGAACTTCAAGTCTCTGAA  150

seq1  GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT  200
      |||| |||| || |||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATAAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT  200

seq1  GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC  250
      |||||||||||||| | || ||||||||||||||||| |||||| |||||
seq2  GGATTGGCAGGATCCATATAGTAAAAATGGCTATCTTACCAAAATCAATC  250

seq1  TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGA  300
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TACAGATTCAATGCAATCTCCATCAAAATTCCAACTCAATTCTTCATCGA  300

seq1  ATTTGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGA  350
      ||| ||||| | |||||||||||||||||| |||| ||||||||||||||
seq2  ATTAGAAAGGGAAATCTGCAAATTCATCTGAAATAGCAAAAAACCTAGGA  350

seq1  TAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGGAATCACCATG  400
      |||||||| || ||||||| ||||| |||||||||| |||||||||||||
seq2  TAGCAAAAGCTATTCTCAATGATAAAAGAACCTCTGATGGAATCACCATG  400

seq1  CCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTA  450
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGACCTGAAGCTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTA  450

seq1  CTGGTATAGTGACAGACAAGCAGA-CCAATGGAATAGAATTGAAGACTCA  499
      |||||||||||||||||||| ||| | |||||||||||||||||||| ||
seq2  CTGGTATAGTGACAGACAAGTAGATCAAATGGAATAGAATTGAAGACCCA  500

seq1  GAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAA  549
      || | |||  ||||||||||||||||||||||| | ||||||||||||||
seq2  GAGATGAACTCACACACCTATGGTCACTTGATCATTGACAAGGGAGCTAA  550

seq1  AACCATCCAGTGG-AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCAC  598
      ||| ||||||||| |||||||||||||||||||||||||||||| || ||
seq2  AACAATCCAGTGGAAAAAAAGACAGCATTTTCAACAAATGGTGCAGGTAC  600

seq1  AACTGGTTGTTATCATGTAGAA-GAATGCGAATTGATCCACTCCTATCTC  647
      ||||||  |||   |||||||| |||||  || |||| || || | ||||
seq2  AACTGGCAGTT---ATGTAGAAGGAATG-AAAATGATTCATTCTTGTCTC  646

seq1  CTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAA  682
      ||||||| ||| |||| |||| |||||||||||||
seq2  CTTGTACAAAGCTCAAGTCTACGTGGATCAAGGAA  681

seq1: chr13_66411704_66412889
seq2: B6Ng01-055G15.g_66_1231

seq1  GAATTCCAGGTTCTTGGATAACCCACTTGCCACTTTCGTTGTGGCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTCTTGGATAACCCACTTGCCACTTTCGTTGTGGCAGGAA  50

seq1  AGAAGATGTTGATACTATGAAAAAGAGGACTAGGAAGGCAGATGAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTTGATACTATGAAAAAGAGGACTAGGAAGGCAGATGAGAGAA  100

seq1  AAGAGAGAAGCTAATTTTACATAGCACAGCAAATTCTTTGCCCTAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAGCTAATTTTACATAGCACAGCAAATTCTTTGCCCTAACTCT  150

seq1  GAGTCTAACCCTAACCCTGATATTTCTTCTTTATGTAATAGAGATCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTAACCCTAACCCTGATATTTCTTCTTTATGTAATAGAGATCCTAG  200

seq1  AGATTCAATGGGATATAAGAATAATAGTGGCCACCTCAAGCCTACCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAATGGGATATAAGAATAATAGTGGCCACCTCAAGCCTACCCCTG  250

seq1  AGCCTAACCCTGATTTATCCTAAACTGTTAACCCTATCTTAAACCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACCCTGATTTATCCTAAACTGTTAACCCTATCTTAAACCTCACA  300

seq1  CCTTAATTTCCTAACCACCCTAACCCTAATCCTAACCACCCTTATCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTTCCTAACCACCCTAACCCTAATCCTAACCACCCTTATCCTAA  350

seq1  TCCTAACCATAACCCTCTGATCGCCTAATCCTAACTCCAGTCCTGCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACCATAACCCTCTGATCGCCTAATCCTAACTCCAGTCCTGCTTAC  400

seq1  TGTGGGGGATATCTCTTAATATATAATATTTCTTAATTATACCTTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGATATCTCTTAATATATAATATTTCTTAATTATACCTTTGAAT  450

seq1  TGAGAAACTCTTGCTTAATCTTGATCTTTTGAGATGTTCAGATCCACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACTCTTGCTTAATCTTGATCTTTTGAGATGTTCAGATCCACCTT  500

seq1  TAATCTAGGCAATAGATTCTTTAGGCATCCTGCATATATGAAAGACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGGCAATAGATTCTTTAGGCATCCTGCATATATGAAAGACATTG  550

seq1  AACAGGGTAGTGCTTTCAGTTTTTTCTTACGTGCCATTCTTTTTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTAGTGCTTTCAGTTTTTTCTTACGTGCCATTCTTTTTTATAAA  600

seq1  ACAAAGGTGATTTGCTCGTGTGATTTTTATAACTGGCATTAAAAAGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGATTTGCTCGTGTGATTTTTATAACTGGCATTAAAAAGTACT  650

seq1  TATTTCTTTAGAATTCTGGTACATCATCTATAATAACCCGCAGCAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTAGAATTCTGGTACATCATCTATAATAACCCGCAGCAGGAAA  700

seq1  TCAACCAGTCCTTGATTTTTCTACTTTCTGTTGGCTGAGAGCCTTTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAGTCCTTGATTTTTCTACTTTCTGTTGGCTGAGAGCCTTTATTG  750

seq1  GGACATTCTATTAAATTTCCTTTCTGTCTACATAGAGAGATTCATTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCTATTAAATTTCCTTTCTGTCTACATAGAGAGATTCATTCTAT  800

seq1  GATTTGAGATATGTTTATCTAGAGAACCTGTACTAATCCAAATGTGGTTT  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATTTGAGATATGTTTATCTAGAAAACCTGTACTAATCCAAATGTGGTTT  850

seq1  TTCTCTATTTCGCCACTGATGAAGATGTGCTGTCTATTAAGAGGGCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATTTCGCCACTGATGAAGATGTGCTGTCTATTAAGAGGGCACAA  900

seq1  CAGTGTTTCCCTTATGTTTCTGGCTTCTCTCCCAGGGTTGTTTGATGCCT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTTCCTTATGTTTCTGGCTTCTCTCCCAGGGTTGTTTGATGCCT  950

seq1  ATCATCTGGTGAAAGGGAGCCGTGATTTCCCTGAGCCCAGCACAAAGCCA  1000
      |||||||||||||||||||||||||||| |||||||||| ||| ||||||
seq2  ATCATCTGGTGAAAGGGAGCCGTGATTT-CCTGAGCCCA-CAC-AAGCCA  997

seq1  CAAATCAAAACTCTTGTTTCCTAAAATCCCTCTTTAATGTTAATTGCCTA  1050
      |||||||||||||||| ||||||||   ||||||||||| ||||||||||
seq2  CAAATCAAAACTCTTG-TTCCTAAA--TCCTCTTTAATG-TAATTGCCTA  1043

seq1  GGCATCCTTCAACTCAGTGGGTCAGATTGATACCTACACTGCACCTGAGT  1100
      ||||||| ||||||| || ||||||||||||| |||||||||| ||||||
seq2  GGCATCC-TCAACTC-GT-GGTCAGATTGATA-CTACACTGCA-CTGAGT  1088

seq1  AATGGGCTATGGAAGCCATTCACCTTGATTTCAGGAAGAAGAGGGCAAGT  1150
       |||| |||  | ||||||||||||||| |||| |||| ||| |||||||
seq2  -ATGGCCTA--GGAGCCATTCACCTTGA-TTCAAGAAG-AGAAGGCAAGT  1133

seq1  ACTGTGAGGAAAGCTCAGGCAAGGTCTGAAGTCAGG  1186
      |||| |||||||||||| |||  |||||||||||||
seq2  ACTG-GAGGAAAGCTCAAGCA--GTCTGAAGTCAGG  1166