BAC Information

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BAC

Clone NameB6Ng01-055H23
Chromosome6 (Build37)3 (Build37)
Map Location 130,786,909 - 130,787,853106,219,785 - 106,220,324
singlet/doubletsingletsinglet
Overlap geneEG636947
Upstream geneKlra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566
Downstream geneLOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055H23.bB6Ng01-055H23.g
ACCDH877926DH877927
length945995
definitionDH877926|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H23, 5' end.DH877927|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(130,786,909 - 130,787,853)(106,219,785 - 106,220,324)
sequence
gaattctcataaagcaaacctatattgataatattctaaaacattttagc
ccaaaattcaacttatattaaatacttatttcaaaaataaaatatgaaaa
attctttcaccttccattaattaactgacatcattaattaatattgtata
gaattcactttaaatcattaagcagtattctaaaatgaaagtattttaac
cagaatactagtaataactatgctaatacaaacatgttgcattatgttta
tattttaatatgggacattattagtatttatgagatatattctctttgaa
gattattgtgttcgtagactttgaatttttttaaatagtaatttttaatc
tcttatccctccttgttacaattatcaataaatacattagaattgtctat
tattattggtgagtttagtgttcattttatgctgggctgatttcattcat
atcttccagttcctgattgataatgccaacagaaacatgttgacaaattc
tacgaaaatagttttgaagagagtatgtgttgagcagagaaaaccatgag
gtttcctgagtatatatgtgtgtgtgttttatgcataaaatcatctgaat
tacaaggaacatagtttctgttccagggcaaaattctaagtggacccaat
gggtggggaagagattgaagctttaagattacatatcctcctctggtcaa
aatgttgatgttcatagtgcattcttcatattgtccacaacagaattctc
actcttaatttttttttttcaaatcacaggaggtcacaacatatgaaagg
gaaaaggccctcttttatttattacaattgccaatatatttagtacttga
atcttgtttggcactttggatttcaagcaaacagtacaaggatatttagg
gcatttgaattacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcacttcctttttttctagagcttttagatgtgttgtcaagctgct
agtatgtgctctctcccgtttcttcttggaggcactcagagctatgagtt
tccctcttagaaatgctttcattgtgtcccaaaggtttgggtacgttgtg
gctcattttcattaaactctaaaaagtctttaatttctttctttattcct
tccttgaccaaggtatcattgagaagagtgttgttcagtttcgacgtgag
tgttggctttctgttatttttttttttttgttattgaagatcagccttag
tgcatggtgatctgataggatacatgggacaatttcaatatttttgaatc
tgttgaggcctgttttgtgacctattatgtggtcaattttggagaaggta
ccatgaggtgctgagaagaaggtatatccttttgttttaggataaaatgt
tctgtagatatctgtcagatccatttgtttcatcacttctgttagtttca
gtgtgtccctgtttagtttctgtttccatgatctgtccattggtgaaagt
gttgtgttgaagtctcccactcttattgtgtgaggtgcaatgtgtgcttt
gagctttactaaagtttctttaatgaatgtggctgcccttgtatttggag
catagatattcagaattgagagttcctcttggaggatcttacctttgatg
ggaacgaagtgcccctccttgtcttttttgatgactttgggttggaagtc
aatcttatcagatattaggatgtctactccagcttgtttcttcataccat
ttgcttggaaaattgttttcgagccttttattctgaggtagtgtctatct
ttttctctgagatgtgtctcctgtaaacagcaaaatgttgggtcttgttt
tgtagccagtttgttagtctatgtctttttattgggggagtgagaccatt
gatgttagagatattaggaaaagtaattgttgcttcctgttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130786909_130787853
seq2: B6Ng01-055H23.b_46_990 (reverse)

seq1  CACACACACACACACACACACACACACACACTGTAATTCAAATGCCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACTGTAATTCAAATGCCCTAA  50

seq1  ATATCCTTGTACTGTTTGCTTGAAATCCAAAGTGCCAAACAAGATTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTGTACTGTTTGCTTGAAATCCAAAGTGCCAAACAAGATTCAAG  100

seq1  TACTAAATATATTGGCAATTGTAATAAATAAAAGAGGGCCTTTTCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATATATTGGCAATTGTAATAAATAAAAGAGGGCCTTTTCCCTTT  150

seq1  CATATGTTGTGACCTCCTGTGATTTGAAAAAAAAAAATTAAGAGTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTGTGACCTCCTGTGATTTGAAAAAAAAAAATTAAGAGTGAGAA  200

seq1  TTCTGTTGTGGACAATATGAAGAATGCACTATGAACATCAACATTTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGTGGACAATATGAAGAATGCACTATGAACATCAACATTTTGAC  250

seq1  CAGAGGAGGATATGTAATCTTAAAGCTTCAATCTCTTCCCCACCCATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGGATATGTAATCTTAAAGCTTCAATCTCTTCCCCACCCATTGG  300

seq1  GTCCACTTAGAATTTTGCCCTGGAACAGAAACTATGTTCCTTGTAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTTAGAATTTTGCCCTGGAACAGAAACTATGTTCCTTGTAATTCA  350

seq1  GATGATTTTATGCATAAAACACACACACATATATACTCAGGAAACCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTATGCATAAAACACACACACATATATACTCAGGAAACCTCAT  400

seq1  GGTTTTCTCTGCTCAACACATACTCTCTTCAAAACTATTTTCGTAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCTGCTCAACACATACTCTCTTCAAAACTATTTTCGTAGAATT  450

seq1  TGTCAACATGTTTCTGTTGGCATTATCAATCAGGAACTGGAAGATATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACATGTTTCTGTTGGCATTATCAATCAGGAACTGGAAGATATGAA  500

seq1  TGAAATCAGCCCAGCATAAAATGAACACTAAACTCACCAATAATAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAGCCCAGCATAAAATGAACACTAAACTCACCAATAATAATAGA  550

seq1  CAATTCTAATGTATTTATTGATAATTGTAACAAGGAGGGATAAGAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAATGTATTTATTGATAATTGTAACAAGGAGGGATAAGAGATTA  600

seq1  AAAATTACTATTTAAAAAAATTCAAAGTCTACGAACACAATAATCTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACTATTTAAAAAAATTCAAAGTCTACGAACACAATAATCTTCAA  650

seq1  AGAGAATATATCTCATAAATACTAATAATGTCCCATATTAAAATATAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATATCTCATAAATACTAATAATGTCCCATATTAAAATATAAAC  700

seq1  ATAATGCAACATGTTTGTATTAGCATAGTTATTACTAGTATTCTGGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCAACATGTTTGTATTAGCATAGTTATTACTAGTATTCTGGTTAA  750

seq1  AATACTTTCATTTTAGAATACTGCTTAATGATTTAAAGTGAATTCTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTCATTTTAGAATACTGCTTAATGATTTAAAGTGAATTCTATAC  800

seq1  AATATTAATTAATGATGTCAGTTAATTAATGGAAGGTGAAAGAATTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAATTAATGATGTCAGTTAATTAATGGAAGGTGAAAGAATTTTTC  850

seq1  ATATTTTATTTTTGAAATAAGTATTTAATATAAGTTGAATTTTGGGCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTTTTGAAATAAGTATTTAATATAAGTTGAATTTTGGGCTAA  900

seq1  AATGTTTTAGAATATTATCAATATAGGTTTGCTTTATGAGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTAGAATATTATCAATATAGGTTTGCTTTATGAGAATTC  945

seq1: chr3_106219785_106220324
seq2: B6Ng01-055H23.g_74_617 (reverse)

seq1  CACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACA  50

seq1  CTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAG  100

seq1  AACATTTTATCCTAAAACAAAAGTATATACCTTCTTCTCAGCACCTCATG  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATG  150

seq1  GTACCTTCTCCAAAATTGACCACATAATAGGTCACAAAACAGGCCTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCTCCAAAATTGACCACATAATAGGTCACAAAACAGGCCTCAAC  200

seq1  AGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGC  250

seq1  ACTAAGGCTGATCTTCAATAAC-----AAAAAAAATAACAGAAAGCCAAC  295
      ||||||||||||||||||||||     |||||||||||||||||||||||
seq2  ACTAAGGCTGATCTTCAATAACAAAAAAAAAAAAATAACAGAAAGCCAAC  300

seq1  ACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGG  345
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGTCGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGG  350

seq1  AAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAA  395
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATG-A  399

seq1  GCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGG  449

seq1  GAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGAGAGCACATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGAGAGCACATA  499

seq1  CTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG  540
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG  544