BAC Information

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BAC

Clone NameB6Ng01-055I02
Chromosome3 (Build37)
Map Location 34,040,881 - 34,156,170
singlet/doubletdoublet
Overlap geneLOC435727, EG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19
Downstream geneEG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055I02.bB6Ng01-055I02.g
ACCDH877932DH877933
length1,0411,016
definitionDH877932|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I02, 5' end.DH877933|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,155,122 - 34,156,170)(34,040,881 - 34,041,804)
sequence
gaattcttttaaaggtggctaaaatactgcagatacctctgaggctcctt
cctcggagcagctctgagtatctgcctgcccagactgtccccacatccag
tgccatcaagccctgtcttctcccttcccctgttcctctctcagtcctgt
tccactgatttggaggagagacattagcaagttttggaatttgtttagtt
aactgcttaaggctcattctgatctcaggtttttaactagctttcttaat
attctgctttattaacattaatcctgagagtcacattgagcatcaggcta
acagacttaattctatatggagcatgaaattcttattagattaatcctgt
agctttgtttggtgacataaaagcactgctgtcttctatctacagatgag
actattgaaactgaagacactgctaggttgagtcatttggaatgattggg
aatgagttatattgccttgtagatgctggtacttaaaataaaacacaaca
taaatacgttattgtgcatggtggcacatgcctgtgatctaccttgaact
cttgagctgctaaggcaaaaggattcagagttcgaagtgagcgtagtgta
cactcccagatcctaagaaaatagaacaaaaaagtagcaacacatacaaa
ccaaagtgaaaacagggaacagcagaggaatttgggagcagtatctggaa
gtctcaaaggatcagaattggaaaatgatgaaaagaaaactagaatttga
aagagaacatcctagattctttatatatatatatgtatatactcatttat
tttgagttattattttattacatcattttttcttttttaaaaatattttt
tattatgtattttcctcaattacatttagaatgctatccaaagtccccca
taccctcccccccacttccctacccacccattcccattttttggccctgg
cattcccctgtactggggcatataagtttgcgtgttcaatggggctctct
ttcagtgatggcgactaggcatcttttgatacatatgcagc
gaattctgttcctgcagcaggctttacttagacagctgttggttacccct
cagataaaggtgccactcctgcaatttcgggggtatcctgcagagctggc
cattgttgtggtttataggcttcacagctgtatgggcctttagctgctct
tctcccctgacagactgcatagctccttcagaggagtcttccagttcaga
gccagctcaacccctccaagttctgtgtctgaaatatattcaccattctc
ctattcttctgtgagatcaactttttaagccttccacatgtaagtgagaa
catgtggtatttatttgtctttcaagatctggcttacttctcttaatata
atgccctcaggctagtccttactgacagctattatagaattctgttcttt
caaatatctgagtgctattctattgtaggcatatactgtattttaataat
gcatccatccattgatatatacccagattgactttaaatcctggatctca
tgactggcacaaaaatcaacaaagcagtattgatgggtcctgtgctgact
tcatttctttgcataatctgtctagcagtgggatagttgggccacatttg
gacaaaacttcattgtttctagagtttgaggaatctgaaaggatcaaaac
aaaaaacaaaaaggattcatttaaagacagtgctgttttctcaccaagaa
tggtcctcatagcctcatatatctgaatgtttggttcctagttagtgaaa
ctgtttgggaaggattaggaggtgtggccttgttggaggagatgtgtcac
tgggggtaggctttcagttttccatctctcaaaagttccagtcaggccca
gtctcacacgctctctgcctgcaatttacagatgagatgtgggttttcag
atatggcttcagaccatcttacctgtctaccactatgctcccttgccatg
atgatcatggactagtgcaaaagtgtaacaagctcccattaatactttct
tttataaggacgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34155122_34156170
seq2: B6Ng01-055I02.b_46_1086 (reverse)

seq1  GCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAG  50
      ||||||||||||||||||||| |||||||| ||||||||| |||||||||
seq2  GCTGCATATGTATCAAAAGAT-GCCTAGTC-GCCATCACT-GAAAGAGAG  47

seq1  GCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGG  100
       ||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCATTGAACACGCAAAC-TTATATGCCCCAGTACAGGGGAATGCCAGG  96

seq1  GCCAAAAAATGGGAATGGGTGGGTAGGGAAGTGGGGGGGAGGGTATGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAATGGGAATGGGTGGGTAGGGAAGTGGGGGGGAGGGTATGGGG  146

seq1  GACTTTTGGGATAGCATTCTAAATGTAATTGAGGAAAATACATAATAAAA  200
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTT--GGATAGCATTCTAAATGTAATTGAGGAAAATACATAATAAAA  194

seq1  AATATTTTTAAAAAAGAAAAAATGATGTAATAAAATAATAAACTCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATATTTTTAAAAAAGAAAAAATGATGTAATAAAATAAT-AACTCAAAAT  243

seq1  AAATGAGTATATACATATATATATATAAAGAATCCTAGGATGTTCTCTTT  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATGAGTATATACATATATATATATAAAGAAT-CTAGGATGTTCTCTTT  292

seq1  CAAATTCTAGTTTTCTTTTCATCATTTTCCAATTCTGATCCTTTGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTAGTTTTCTTTTCATCATTTTCCAATTCTGATCCTTTGAGACT  342

seq1  TCCAGATACTGCTCCCAAATTCCTCTGCTGTTCCCTGTTTTCACTTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATACTGCTCCCAAATTCCTCTGCTGTTCCCTGTTTTCACTTTGGT  392

seq1  TTGTATGTGTTGCTACTTTTTTGTTCTATTTTCTTAGGATCTGGGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTGTTGCTACTTTTTTGTTCTATTTTCTTAGGATCTGGGAGTGT  442

seq1  ACACTACGCTCACTTCGAACTCTGAATCCTTTTGCCTTAGCAGCTCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACGCTCACTTCGAACTCTGAATCCTTTTGCCTTAGCAGCTCAAGA  492

seq1  GTTCAAGGTAGATCACAGGCATGTGCCACCATGCACAATAACGTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGTAGATCACAGGCATGTGCCACCATGCACAATAACGTATTTAT  542

seq1  GTTGTGTTTTATTTTAAGTACCAGCATCTACAAGGCAATATAACTCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTTTATTTTAAGTACCAGCATCTACAAGGCAATATAACTCATTC  592

seq1  CCAATCATTCCAAATGACTCAACCTAGCAGTGTCTTCAGTTTCAATAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATTCCAAATGACTCAACCTAGCAGTGTCTTCAGTTTCAATAGTC  642

seq1  TCATCTGTAGATAGAAGACAGCAGTGCTTTTATGTCACCAAACAAAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTAGATAGAAGACAGCAGTGCTTTTATGTCACCAAACAAAGCTA  692

seq1  CAGGATTAATCTAATAAGAATTTCATGCTCCATATAGAATTAAGTCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTAATCTAATAAGAATTTCATGCTCCATATAGAATTAAGTCTGTT  742

seq1  AGCCTGATGCTCAATGTGACTCTCAGGATTAATGTTAATAAAGCAGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATGCTCAATGTGACTCTCAGGATTAATGTTAATAAAGCAGAATA  792

seq1  TTAAGAAAGCTAGTTAAAAACCTGAGATCAGAATGAGCCTTAAGCAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAGCTAGTTAAAAACCTGAGATCAGAATGAGCCTTAAGCAGTTA  842

seq1  ACTAAACAAATTCCAAAACTTGCTAATGTCTCTCCTCCAAATCAGTGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAAATTCCAAAACTTGCTAATGTCTCTCCTCCAAATCAGTGGAA  892

seq1  CAGGACTGAGAGAGGAACAGGGGAAGGGAGAAGACAGGGCTTGATGGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGAGAGAGGAACAGGGGAAGGGAGAAGACAGGGCTTGATGGCAC  942

seq1  TGGATGTGGGGACAGTCTGGGCAGGCAGATACTCAGAGCTGCTCCGAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGGGGACAGTCTGGGCAGGCAGATACTCAGAGCTGCTCCGAGGA  992

seq1  AGGAGCCTCAGAGGTATCTGCAGTATTTTAGCCACCTTTAAAAGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTCAGAGGTATCTGCAGTATTTTAGCCACCTTTAAAAGAATTC  1041

seq1: chr3_34040881_34041804
seq2: B6Ng01-055I02.g_166_1081

seq1  CATTGTTGTGGTTTATAGGCTTCACAGCTGTATGGGCCTTTAGCTGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGTGGTTTATAGGCTTCACAGCTGTATGGGCCTTTAGCTGCTCT  50

seq1  TCTCCCCTGACAGACTGCATAGCTCCTTCAGAGGAGTCTTCCAGTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTGACAGACTGCATAGCTCCTTCAGAGGAGTCTTCCAGTTCAGA  100

seq1  GCCAGCTCAACCCCTCCAAGTTCTGTGTCTGAAATATATTCACCATTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCAACCCCTCCAAGTTCTGTGTCTGAAATATATTCACCATTCTC  150

seq1  CTATTCTTCTGTGAGATCAACTTTTTAAGCCTTCCACATGTAAGTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTCTGTGAGATCAACTTTTTAAGCCTTCCACATGTAAGTGAGAA  200

seq1  CATGTGGTATTTATTTGTCTTTCAAGATCTGGCTTACTTCTCTTAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTATTTATTTGTCTTTCAAGATCTGGCTTACTTCTCTTAATATA  250

seq1  ATGCCCTCAGGCTAGTCCTTACTGACAGCTATTATAGAATTCTGTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCAGGCTAGTCCTTACTGACAGCTATTATAGAATTCTGTTCTTT  300

seq1  CAAATATCTGAGTGCTATTCTATTGTAGGCATATACTGTATTTTAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTGAGTGCTATTCTATTGTAGGCATATACTGTATTTTAATAAT  350

seq1  GCATCCATCCATTGATATATACCCAGATTGACTTTAAATCCTGGATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATCCATTGATATATACCCAGATTGACTTTAAATCCTGGATCTCA  400

seq1  TGACTGGCACAAAAATCAACAAAGCAGTATTGATGGGTCCTGTGCTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCACAAAAATCAACAAAGCAGTATTGATGGGTCCTGTGCTGACT  450

seq1  TCATTTCTTTGCATAATCTGTCTAGCAGTGGGATAGTTGGGCCACATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTTGCATAATCTGTCTAGCAGTGGGATAGTTGGGCCACATTTG  500

seq1  GACAAAACTTCATTGTTTCTAGAGTTTGAGGAATCTGAAAGGATCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACTTCATTGTTTCTAGAGTTTGAGGAATCTGAAAGGATCAAAAC  550

seq1  AAAAAACAAAAAGGATTCATTTAAAGACAGTGCTGTTTTCTCACCAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAGGATTCATTTAAAGACAGTGCTGTTTTCTCACCAAGAA  600

seq1  TGGTCCTCATAGCCTCATATATCTGAATGTTTGGTTCCTAGTTAGTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCATAGCCTCATATATCTGAATGTTTGGTTCCTAGTTAGTGAAA  650

seq1  CTGTTTGGGAAGGATTAGGAGGTGTGGCCTTGTTGGAGGAGATGTGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGGAAGGATTAGGAGGTGTGGCCTTGTTGGAGGAGATGTGTCAC  700

seq1  TGGGGGTAGGCTTTCAGTTTTCCATCTCTCAAAAGTTCCAGTCAGGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTAGGCTTTCAGTTTTCCATCTCTCAAAAGTTCCAGTCAGGCCCA  750

seq1  GTCTCACACGCTCTCTGCCTGCAATTTACAGATGAGATGTGGGTTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCTCACACGCTCTCTGCCTGCAATTTACAGATGAGATGTGGGTTTTCAG  800

seq1  ATATTGCTTCAGGACCATACTTACCTGTCTACCACTATGCTCCCTTGCCA  850
      |||| |||||| |||||| |||||||||||||||||||||||||||||||
seq2  ATATGGCTTCA-GACCAT-CTTACCTGTCTACCACTATGCTCCCTTGCCA  848

seq1  TGATGATCATGGACTAGTGCAAGAAGCTGTAAGCAAGCTCCCATTTAAAT  900
      |||||||||||||||||||||| ||| ||||| ||||||||||||  |||
seq2  TGATGATCATGGACTAGTGCAA-AAG-TGTAA-CAAGCTCCCATT--AAT  893

seq1  ACTTTCTTTTATAAGGTACGTTGA  924
      |||||||||||||||| |||||||
seq2  ACTTTCTTTTATAAGG-ACGTTGA  916