BAC Information

Click to search

BAC

Clone NameB6Ng01-055J05
Chromosome3 (Build37)
Map Location 121,179,308 - 121,306,086
singlet/doubletdoublet
Overlap geneSlc44a3
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3
Downstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055J05.bB6Ng01-055J05.g
ACCDH877982DH877983
length1,1031,028
definitionDH877982|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J05, 5' end.DH877983|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,179,308 - 121,180,412)(121,305,341 - 121,306,086)
sequence
gaattccatttcctagagagggcccaaggatgcatgaagacaaacagatt
tttttttcaagggcaacctgtgctaactgatgcctgggaacacctgaaac
cttgcataaaagcccccaaaatagtgattcaccttcctagaaatccagca
aaactggaactcaagtcaggcatggtgcagtgttcctcacagcgctgagt
tttggtctttgattcactcctgtgaaaaccgctcgaagatgaggctcagg
tggtgggggcctcgtgggatcgcaggattcctgacagccagatcacggct
tttattccttagtcactacaactcaccttctctctcatctgttcttctta
gacgtgtgttctctagcccaggacaaaccacttccttctccatgtctagg
gcagaggtaactgaggaaggagagtcgaggcatgcacccacagtgggttc
ctcaaagacaggaaagggaggggtggaaaggactttggaggagtctcaag
gagacccaatgtggagatagtataaagaaatcatttgtggtaggagctac
ttagctgtttaattccatttctcaagtgaaacggatctgggagatgtcag
caataatctctaacctttacatttcttttcttttcttttcttttcttttc
ttttttttttttttcaagacagagtttctctatataaccctagctgtcct
ggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctgc
ctctgcctcccaagtgctgggattaaaggcgtgcaccaccattgccggct
ttacatttctttagtattggttggagtgaaggacattcctcttgcatttc
tgagcgcccttttttatccctccttatgagcacgaggatgttctgtcttc
ttgatgcagagattgagggtacctcccacagacacaaagctgcggcacgg
aaagcttattaggagatgggatatggctgctagatcctccgcttccagca
cggtcccagcatgtcctattcatgagggagttgggttttggctgacttcc
tagggaattcatagatcaatgcttaaacccaaggtttccttctgctattc
cca
gaattcctgctttattctaagctgtggttggggaaatggctgtcaacaag
gtagaagtccctgactttctgaggagggcattcgagcaaggaggcagaca
agaccatgactatgtaaggtagtgtcaggctgggaagaagatgaagcaag
caggagctggccttgagaagtaggctcagggagggcctccttgaagaaag
gcgcatgggtaaaaacaaggcccagtggagacagaagcttgcctctctgg
aagaactttacatcacagtgatggaaacgggcgtggcctagagaagccaa
atttagcaaagaggagtgggaggataggaagaaaggtggggagcctgagt
aggaagttcaactagtatctatggggaataatgattaatagcatccgtgc
catccaaaaccgggaagtacttgtcttggtctgctgttctgttgcaacaa
catagtctcggacagtgtggcttgttaacaacagaacttcatttttcacc
gttctgaaagtcgggaagtctaagagtaaagcactagtaggttcagatct
actaagaaccagttgcagggttccagatagcatcttgttgctgaatcttc
cagagtagaagctgcagcgtcttcacacagaggggaaaacagagaaggca
aacccttaccctcaaaccctttacaaaggcccaaatcccatccaagtggg
gttcttagcactgttgcatttgaagattaattctcaacataaattttaga
ggctggcccacattcaaaccacaacaatgctcatgtgagaataaattatc
cgttgttaatcggaaattctaatttgacctccaatagcccgttttagttg
ataaacagactcatgtttgatctccgggccacacagctcattctcttctt
ttgcatgtaagcactgattgtgagaactgacttgtcagcacagggctggg
ggtgtaagcctcacggtagaagagggcttgcctgagtaaaatgccaggta
gggttgtggaacggttgaagtctgctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121179308_121180412
seq2: B6Ng01-055J05.b_48_1150

seq1  GAATTCCATTTCCTAGAGAGGGCCCAAGGATGCATGAAGACAAACAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTCCTAGAGAGGGCCCAAGGATGCATGAAGACAAACAGATT  50

seq1  TTTTTTTCAAGGGCAACCTGTGCTAACTGATGCCTGGGAACACCTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAAGGGCAACCTGTGCTAACTGATGCCTGGGAACACCTGAAAC  100

seq1  CTTGCATAAAAGCCCCCAAAATAGTGATTCACCTTCCTAGAAATCCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATAAAAGCCCCCAAAATAGTGATTCACCTTCCTAGAAATCCAGCA  150

seq1  AAACTGGAACTCAAGTCAGGCATGGTGCAGTGTTCCTCACAGCGCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAACTCAAGTCAGGCATGGTGCAGTGTTCCTCACAGCGCTGAGT  200

seq1  TTTGGTCTTTGATTCACTCCTGTGAAAACCGCTCGAAGATGAGGCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTTGATTCACTCCTGTGAAAACCGCTCGAAGATGAGGCTCAGG  250

seq1  TGGTGGGGGCCTCGTGGGATCGCAGGATTCCTGACAGCCAGATCACGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGGCCTCGTGGGATCGCAGGATTCCTGACAGCCAGATCACGGCT  300

seq1  TTTATTCCTTAGTCACTACAACTCACCTTCTCTCTCATCTGTTCTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTTAGTCACTACAACTCACCTTCTCTCTCATCTGTTCTTCTTA  350

seq1  GACGTGTGTTCTCTAGCCCAGGACAAACCACTTCCTTCTCCATGTCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGTGTTCTCTAGCCCAGGACAAACCACTTCCTTCTCCATGTCTAGG  400

seq1  GCAGAGGTAACTGAGGAAGGAGAGTCGAGGCATGCACCCACAGTGGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTAACTGAGGAAGGAGAGTCGAGGCATGCACCCACAGTGGGTTC  450

seq1  CTCAAAGACAGGAAAGGGAGGGGTGGAAAGGACTTTGGAGGAGTCTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGACAGGAAAGGGAGGGGTGGAAAGGACTTTGGAGGAGTCTCAAG  500

seq1  GAGACCCAATGTGGAGATAGTATAAAGAAATCATTTGTGGTAGGAGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCAATGTGGAGATAGTATAAAGAAATCATTTGTGGTAGGAGCTAC  550

seq1  TTAGCTGTTTAATTCCATTTCTCAAGTGAAACGGATCTGGGAGATGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTTTAATTCCATTTCTCAAGTGAAACGGATCTGGGAGATGTCAG  600

seq1  CAATAATCTCTAACCTTTACATTTCTTTTCTTTTCTTTTCTTTTCTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCTCTAACCTTTACATTTCTTTTCTTTTCTTTTCTTTTCTTTTC  650

seq1  TTTTTTTTTTTTTTCAAGACAGAGTTTCTCTATATAACCCTAGCTGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTCAAGACAGAGTTTCTCTATATAACCCTAGCTGTCCT  700

seq1  GGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGC  750

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCATTGCCCGGC  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCATTG-CCGGC  799

seq1  TTTACATTTCTTTAGTATT-GTTGGAGTGTAGGACATTCCTCTTGCA-TT  848
      ||||||||||||||||||| ||||||||| ||||||||||||||||| ||
seq2  TTTACATTTCTTTAGTATTGGTTGGAGTGAAGGACATTCCTCTTGCATTT  849

seq1  CTGAGCGCCCTTTTTTATCCCTCCCTATGAGCACCGAGGATGTTCTGTCT  898
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  CTGAGCGCCCTTTTTTATCCCTCCTTATGAGCA-CGAGGATGTTCTGTCT  898

seq1  TC-TGATGCAGAGAATGAGGGTACCTCCCACAGACACAAAGCTGCGGCAC  947
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTGATGCAGAGATTGAGGGTACCTCCCACAGACACAAAGCTGCGGCAC  948

seq1  GG-AAGCATA-TAGGAGATTGGGATATGGCTGCTAGATCCTCCGCATCCA  995
      || |||| || ||||||| |||||||||||||||||||||||||| ||||
seq2  GGAAAGCTTATTAGGAGA-TGGGATATGGCTGCTAGATCCTCCGCTTCCA  997

seq1  GCACGGTCACAGCATGTCCTTATTCATGAGGGAGTTGGGTTTT-GCTGAC  1044
      |||||||| |||||||||| ||||||||||||||||||||||| ||||||
seq2  GCACGGTCCCAGCATGTCC-TATTCATGAGGGAGTTGGGTTTTGGCTGAC  1046

seq1  TTCCATGGTAATTTTCATAGATCAATGTTTAAAACCCAAGGGTTCCCATC  1094
      ||||  || ||  |||||||||||||| || |||||||| |||| || ||
seq2  TTCCTAGGGAA--TTCATAGATCAATGCTT-AAACCCAA-GGTTTCCTTC  1092

seq1  TGCTATTCCCA  1105
      |||||||||||
seq2  TGCTATTCCCA  1103

seq1: chr3_121305341_121306086
seq2: B6Ng01-055J05.g_344_1095 (reverse)

seq1  TGAGCAG-CTCCAACCGTTCCAC-ACCCTACCCTGGCATTTTACTCAGGC  48
      ||||||| || |||||||||||| |||||| |||||||||||||||||||
seq2  TGAGCAGACTTCAACCGTTCCACAACCCTA-CCTGGCATTTTACTCAGGC  49

seq1  AAGCCCTC-TCTACCCGTGAG--CTACA-CCCCAGCCCTGTGCTGACAGT  94
      |||||||| |||| |||||||   |||| |||||||||||||||||||  
seq2  AAGCCCTCTTCTA-CCGTGAGGCTTACACCCCCAGCCCTGTGCTGACAAG  98

seq1  TCAG-TCTCAC-ATCAGTGCTTACATGCAAAGGAAGAGGATGAGCTGTGT  142
      |||| |||||| ||||||||||||||||||| |||||| |||||||||| 
seq2  TCAGTTCTCACAATCAGTGCTTACATGCAAAAGAAGAGAATGAGCTGTG-  147

seq1  TGGCCCGGGGATCAAACATGAGTCTGTTTATCAACTAAAACGGGCTATTG  192
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGGAGATCAAACATGAGTCTGTTTATCAACTAAAACGGGCTATTG  197

seq1  GA-GTCAAATTAGAATTTCCGATTAACAACGGATAATTTATTCTCACATG  241
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAAATTAGAATTTCCGATTAACAACGGATAATTTATTCTCACATG  247

seq1  AGCATTGTTGTGGTTTGAATGTGGGCCAGCCTCTAAAATTTATGTTGAGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTTGTGGTTTGAATGTGGGCCAGCCTCTAAAATTTATGTTGAGA  297

seq1  ATTAATCTTCAAATGCAACAGTGCTAAGAACCCCACTTGGATGGGATTTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTTCAAATGCAACAGTGCTAAGAACCCCACTTGGATGGGATTTG  347

seq1  GGCCTTTGTAAAGGGTTTGAGGGTAAGGGTTTGCCTTCTCTGTTTTCCCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGTAAAGGGTTTGAGGGTAAGGGTTTGCCTTCTCTGTTTTCCCC  397

seq1  TCTGTGTGAAGACGCTGCAGCTTCTACTCTGGAAGATTCAGCAACAAGAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGAAGACGCTGCAGCTTCTACTCTGGAAGATTCAGCAACAAGAT  447

seq1  GCTATCTGGAACCCTGCAACTGGTTCTTAGTAGATCTGAACCTACTAGTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGGAACCCTGCAACTGGTTCTTAGTAGATCTGAACCTACTAGTG  497

seq1  CTTTACTCTTAGACTTCCCGACTTTCAGAACGGTGAAAAATGAAGTTCTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCTTAGACTTCCCGACTTTCAGAACGGTGAAAAATGAAGTTCTG  547

seq1  TTGTTAACAAGCCACACTGTCCGAGACTATGTTGTTGCAACAGAACAGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACAAGCCACACTGTCCGAGACTATGTTGTTGCAACAGAACAGCA  597

seq1  GACCAAGACAAGTACTTCCCGGTTTTGGATGGCACGGATGCTATTAATCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGACAAGTACTTCCCGGTTTTGGATGGCACGGATGCTATTAATCA  647

seq1  TTATTCCCCATAGATACTAGTTGAACTTCCTACTCAGGCTCCCCACCTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCCATAGATACTAGTTGAACTTCCTACTCAGGCTCCCCACCTTT  697

seq1  CTTCCTATCCTCCCACTCCTCTTTGCTAAATTTGGCTTCTCTAGGCCACG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATCCTCCCACTCCTCTTTGCTAAATTTGGCTTCTCTAGGCCACG  747

seq1  CCCGT  746
      |||||
seq2  CCCGT  752