BAC Information

Click to search

BAC

Clone NameB6Ng01-056K08
Chromosome3 (Build37)
Map Location 127,969,822 - 128,138,816
singlet/doubletdoublet
Overlap geneEG668828
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056K08.bB6Ng01-056K08.g
ACCDH878740DH878741
length1,154842
definitionDH878740|Mus musculus domesticus DNA, BAC clone: B6Ng01-056K08, 5' end.DH878741|Mus musculus domesticus DNA, BAC clone: B6Ng01-056K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,969,822 - 127,970,988)(128,137,975 - 128,138,816)
sequence
gaattctgaaactatacagagaacttattacacaaacatgagcgagataa
ctggagtcattttctagtgatttttaagaatttttccttggctattctta
tgattccgaaactggtttctgaataattaccaaaacaaatccaggtaact
aggaccctcaagactttcatcagagaaacctgttacgaacttacctatgc
tctgtttttcccctctactttaaaaaaattttttctctctttatggagat
atgggccaatatttgccactgtggtggagacaggaaggaaaggtgagatg
ggtaacacaaataggtacacagagtcaaaactactactggaaaaacaatc
tcttaagatgtttccagtatgagaagatatatacatacgggcagagcaaa
gctatcactgctacaatcctctgaattaagtgtactttatttttccaggg
atcacatacttatttccatgtgaaatgtaaaccccatgatttcaagactt
ctggctttcataggcacacacacacacacacacacacacacaaaataaat
aaaactgagccttttttatttatcaagataaattaataaataaagtaact
gccttcttccactggaatactttgcttatataaaggatattttaaaaacc
aagacatgaaaatttaaaaagaatacattttatttaatatttaattttct
tctatttttttctttttacttttttgtcttctcattttaccaaacacaag
aaaattcaagtttcacttggtaacccttggtaaattgctttcccatactg
tgaaaagggtgtgcctgccagtctgccagtctatctatctagatttctgt
tcaaaagagaaaacagaccttgggagcatgtggaaacactaagctaatgc
catacatgaagagttccccagggttctagggcaagggtggttagaaagca
gcttagcctttaaagtgagcgcagctgctcagtcaacgaagagtggactg
atggctgcctggctgtcgctctacccaccacgccaaactattttcccatt
ttgtttcaagctgctgcttgcaaaaaattttcttatatctttttgaacat
tgatcattgaagcctattcaagcacacgtaatcaggatggctaaaattta
tttc
gaattctcatatgaaaacagaaccattagatagcaaaacaaccaatcctc
tgttcaatttttattccacttgggccaaccgttttaaacactggtttctt
tttctgtagggagatatcatggccagttttaagagtctagagcaaaaagt
agaaacagatgagagatgtagatccaagggtaagaaaccaatgcagggaa
attctggagagatcacaagttcttgcaaatggaaaaaaatggaaaaaaat
ggaaaaatggaaaaaatgaagtagcaataagaacaaatcaaagaatactg
cagtcagattctataagaatatatcacataaaaggcaaatcatgaaaatt
atttccataatccaagactactttcgagttacatgtaggcagaggctgaa
aataccacatcctttgattacattatataaagatattgagagtgaataga
gctggaagcccacccacccatcactcatccaccatccacctaacctggtc
ctgacagccgaatttcttagtgactagggctgttatgtggctcctggaga
agaaaagatgtcaatggtcttgccaactttgaatcccttaaactgcaatg
caatacttccagacaagatacacccatttgtgcaacagtggcacagctgt
tgggggtaactacacctctccacttgaacttgagatctactccactgaaa
gaaatctgtacttggtactttaagcacacaccaattcataaacttgtctt
ctgaccaccacatatgcatcacaaacataagcccctatacctaccctcct
gtctctgtctctgtgtgtctctttctatgtgtgtgtgtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127969822_127970988
seq2: B6Ng01-056K08.b_46_1199

seq1  GAATTCTGAAACTATACAGAGAACTTATTACACAAACATGAGCGAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAACTATACAGAGAACTTATTACACAAACATGAGCGAGATAA  50

seq1  CTGGAGTCATTTTCTAGTGATTTTTAAGAATTTTTCCTTGGCTATTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCATTTTCTAGTGATTTTTAAGAATTTTTCCTTGGCTATTCTTA  100

seq1  TGATTCCGAAACTGGTTTCTGAATAATTACCAAAACAAATCCAGGTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCGAAACTGGTTTCTGAATAATTACCAAAACAAATCCAGGTAACT  150

seq1  AGGACCCTCAAGACTTTCATCAGAGAAACCTGTTACGAACTTACCTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTCAAGACTTTCATCAGAGAAACCTGTTACGAACTTACCTATGC  200

seq1  TCTGTTTTTCCCCTCTACTTTAAAAAAATTTTTTCTCTCTTTATGGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTCCCCTCTACTTTAAAAAAATTTTTTCTCTCTTTATGGAGAT  250

seq1  ATGGGCCAATATTTGCCACTGTGGTGGAGACAGGAAGGAAAGGTGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCAATATTTGCCACTGTGGTGGAGACAGGAAGGAAAGGTGAGATG  300

seq1  GGTAACACAAATAGGTACACAGAGTCAAAACTACTACTGGAAAAACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACAAATAGGTACACAGAGTCAAAACTACTACTGGAAAAACAATC  350

seq1  TCTTAAGATGTTTCCAGTATGAGAAGATATATACATACGGGCAGAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGATGTTTCCAGTATGAGAAGATATATACATACGGGCAGAGCAAA  400

seq1  GCTATCACTGCTACAATCCTCTGAATTAAGTGTACTTTATTTTTCCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCACTGCTACAATCCTCTGAATTAAGTGTACTTTATTTTTCCAGGG  450

seq1  ATCACATACTTATTTCCATGTGAAATGTAAACCCCATGATTTCAAGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATACTTATTTCCATGTGAAATGTAAACCCCATGATTTCAAGACTT  500

seq1  CTGGCTTTCATAGGCACACACACACACACACACACACACACAAAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTCATAGGCACACACACACACACACACACACACACAAAATAAAT  550

seq1  AAAACTGAGCCTTTTTTATTTATCAAGATAAATTAATAAATAAAGTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAGCCTTTTTTATTTATCAAGATAAATTAATAAATAAAGTAACT  600

seq1  GCCTTCTTCCACTGGAATACTTTGCTTATATAAAGGATATTTTAAAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTCCACTGGAATACTTTGCTTATATAAAGGATATTTTAAAAACC  650

seq1  AAGACATGAAAATTTAAAAAGAATACATTTTATTTAATATTTAATTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGAAAATTTAAAAAGAATACATTTTATTTAATATTTAATTTTCT  700

seq1  TCTATTTTTTTCTTTTTACTTTTTTGTCTTCTCATTTTACCAAACACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTTCTTTTTACTTTTTTGTCTTCTCATTTTACCAAACACAAG  750

seq1  AAAATTCAAGTTTCACTTGGTAACCCTTGGTAAATTGCTTTCCCATACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAAGTTTCACTTGGTAACCCTTGGTAAATTGCTTTCCCATACTG  800

seq1  TGAAAAGGGTGTGCCTGCCAGTCTGCCAGTCTATCTATCTAGATTTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGGTGTGCCTGCCAGTCTGCCAGTCTATCTATCTAGATTTCTGT  850

seq1  TCAAAAGAGAAAACAGACCTTGGGAGCATGTGGAAACACTAAGCTAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAGAAAACAGACCTTGGGAGCATGTGGAAACACTAAGCTAATGC  900

seq1  CATACATGAAGAGTTCCCCAGGGTTCTAGGGCAAGGGTGGTTAGAAAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGAAGAGTTCCCCAGGGTTCTAGGGCAAGGGTGGTTAGAAAGCA  950

seq1  GCTTAGCATTTAAAGTGAGCGCAGGCTGCTCAGTCAAACGAAGAGT-GAC  999
      ||||||| ||||||||||||||| ||||||||||| |||||||||| |||
seq2  GCTTAGCCTTTAAAGTGAGCGCA-GCTGCTCAGTC-AACGAAGAGTGGAC  998

seq1  TGATGGCTGCCTGGCTGTCGCTCTACCCACCACGCCAACCTATTTTTCCC  1049
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  TGATGGCTGCCTGGCTGTCGCTCTACCCACCACGCCAAACTA-TTTTCCC  1047

seq1  ATTTTGTTTCAAGCTGCTGCTGCAAAAAAATTTTCTAATATCTTTTTGAA  1099
      |||||||||||||||||||||   |||||||||||| |||||||||||||
seq2  ATTTTGTTTCAAGCTGCTGCTTGCAAAAAATTTTCTTATATCTTTTTGAA  1097

seq1  CAATTGATTCATTGAAAGGCTAATTTCAAGACAACGTAAATCACAGAGAT  1149
      | ||||| |||||| ||| |||  ||||||   |||| |||||    |||
seq2  C-ATTGA-TCATTG-AAGCCTA--TTCAAGCACACGT-AATCA---GGAT  1138

seq1  GGCTAAAATTTTTATTTC  1167
      ||||||||  ||||||||
seq2  GGCTAAAA--TTTATTTC  1154

seq1: chr3_128137975_128138816
seq2: B6Ng01-056K08.g_69_909 (reverse)

seq1  CACACACACACACATAGAAAGAGACACACAGAGACAGAGACAGGAGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACATAGAAAGAGACACACAGAGACAGAGACAGGAGGGTA  50

seq1  GGTATAGGGGCTTATGTTTGTGATGCATATGTGGTGGTCAGAAGACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGGGGCTTATGTTTGTGATGCATATGTGGTGGTCAGAAGACAAGT  100

seq1  TTATGAAATTGGTGTGTGCTTAAAGTACCAAGTACAGATTTCTTTCAGTG  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATG-AATTGGTGTGTGCTTAAAGTACCAAGTACAGATTTCTTTCAGTG  149

seq1  GAGTAGATCTCAAGTTCAAGTGGAGAGGTGTAGTTACCCCCAACAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATCTCAAGTTCAAGTGGAGAGGTGTAGTTACCCCCAACAGCTGT  199

seq1  GCCACTGTTGCACAAATGGGTGTATCTTGTCTGGAAGTATTGCATTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTTGCACAAATGGGTGTATCTTGTCTGGAAGTATTGCATTGCAG  249

seq1  TTTAAGGGATTCAAAGTTGGCAAGACCATTGACATCTTTTCTTCTCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGATTCAAAGTTGGCAAGACCATTGACATCTTTTCTTCTCCAGG  299

seq1  AGCCACATAACAGCCCTAGTCACTAAGAAATTCGGCTGTCAGGACCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATAACAGCCCTAGTCACTAAGAAATTCGGCTGTCAGGACCAGGT  349

seq1  TAGGTGGATGGTGGATGAGTGATGGGTGGGTGGGCTTCCAGCTCTATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGATGGTGGATGAGTGATGGGTGGGTGGGCTTCCAGCTCTATTCA  399

seq1  CTCTCAATATCTTTATATAATGTAATCAAAGGATGTGGTATTTTCAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAATATCTTTATATAATGTAATCAAAGGATGTGGTATTTTCAGCCT  449

seq1  CTGCCTACATGTAACTCGAAAGTAGTCTTGGATTATGGAAATAATTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTACATGTAACTCGAAAGTAGTCTTGGATTATGGAAATAATTTTCA  499

seq1  TGATTTGCCTTTTATGTGATATATTCTTATAGAATCTGACTGCAGTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCCTTTTATGTGATATATTCTTATAGAATCTGACTGCAGTATTC  549

seq1  TTTGATTTGTTCTTATTGCTACTTCATTTTTTCCATTTTTCCATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGTTCTTATTGCTACTTCATTTTTTCCATTTTTCCATTTTTTT  599

seq1  CCATTTTTTTCCATTTGCAAGAACTTGTGATCTCTCCAGAATTTCCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTTCCATTTGCAAGAACTTGTGATCTCTCCAGAATTTCCCTGC  649

seq1  ATTGGTTTCTTACCCTTGGATCTACATCTCTCATCTGTTTCTACTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTCTTACCCTTGGATCTACATCTCTCATCTGTTTCTACTTTTTG  699

seq1  CTCTAGACTCTTAAAACTGGCCATGATATCTCCCTACAGAAAAAGAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGACTCTTAAAACTGGCCATGATATCTCCCTACAGAAAAAGAAACC  749

seq1  AGTGTTTAAAACGGTTGGCCCAAGTGGAATAAAAATTGAACAGAGGATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTAAAACGGTTGGCCCAAGTGGAATAAAAATTGAACAGAGGATTG  799

seq1  GTTGTTTTGCTATCTAATGGTTCTGTTTTCATATGAGAATTC  842
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGCTATCTAATGGTTCTGTTTTCATATGAGAATTC  841