BAC Information

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BAC

Clone NameB6Ng01-056P03
Chromosome3 (Build37)
Map Location 125,493,436 - 125,592,522
singlet/doubletdoublet
Overlap geneUgt8a
Upstream geneLOC668820, Ndst4
Downstream geneArsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056P03.bB6Ng01-056P03.g
ACCDH878955DH878956
length761806
definitionDH878955|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P03, 5' end.DH878956|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,591,763 - 125,592,522)(125,493,436 - 125,494,241)
sequence
gaattccattgccacatatttgaagctagtttgaacagatcaaagtgaca
catttatgcacaaggaagattacaaatgccttgcttgtaatgagaaatta
gtatttaaataatttacatacatttttctagagtagcagtctatataaaa
tcgttttttcttcctcattttttccctcttagttaagccagatccagagt
gtataatgagatttttatttagattttgtggagcagtttaagggaaagac
attagtttttaaatcttgccattatggcacaaaagtgggatttacttaca
gtttagttcagtatttcatggatctttaaaaaatacttagatgtaacaaa
attttaaactcaagtagcagtatagaaagtaaaatactatctgtggatta
aagcaggatgaaaacataacaaaacagtcaactaaacaaaagaaccaaac
aaccaaaaaaaaaaaaaaaaaaaaaaaaacccaagaaaccaccaccacca
ccaaagaacaaccagtaagtagagggatggtggaggggataggagatttt
tagaagggaaactaggaaagaggataacatttgatatataaataaagaaa
atatctaatttttaaaaaagaagaagaagaagaagaagaaggcccagtcc
attgtgggtagtaataattcccctgcataggggatcctaggttttataag
aaagcaggctgagaaagccatggggagcaggtcattaaagcagcagcatg
gtctctgcatt
gaattcatcaggcaaaagggcttgataccaacactgaagacctgaatttc
cttcccactctgcacatggtggaaggagagcataatatctctcattaatg
ccattaatgaagcctgaaggttacactagagagagagaaaaattatggct
caagaatgttaatatttttgctgaaattaaatttgtgttaggtaggaata
ttatctcagtatgtccctgtgaaattccattctttttaaaactccctgga
gctgggaaaatggcttagtcagaaaagtacttcccttgctacatgagaac
ataaattcaacccctgcaagccatgttgcaaaaagaaaagaaaagaagga
aagaaaaagaaaaggaaaaggaaaggaaaaaaggcataatcctgaagtca
agacaatggaagtaggtaaaactctacagctcaagggctagcctggggta
accagtgaggccaagatctctgtgagatacactgtctcagtaaaggtaga
caattcttgaagaatcccagtagatttccttagactttttttcacatatg
caaccccccccccacacacacacacaaatatatatgcatacgcacacaga
ttccttgtactcttttaatcacagtacagatgaaggattcaccaaaaaaa
gggcaggagatatatgtagatattggttctcatgtctgctcttcgtattt
tctttatctgattgaagtagcacccttcatagccggctccacatctagat
gtgtgaaggtgaggctagaatcctccctgcattagtgtgtgtgtgggggg
gggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125591763_125592522
seq2: B6Ng01-056P03.b_47_807 (reverse)

seq1  AATGCAGAGACCATGCTGCTGC-TTAATGACCTGCTCCCCATGGCTTTCT  49
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATGCAGAGACCATGCTGCTGCTTTAATGACCTGCTCCCCATGGCTTTCT  50

seq1  CAGCCTGCTTTCTTATAAAACCTAGGATCCCCTATGCAGGGGAATTATTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCTTTCTTATAAAACCTAGGATCCCCTATGCAGGGGAATTATTA  100

seq1  CTACCCACAATGGACTGGGCCTTCTTCTTCTTCTTCTTCTTCTTTTTTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACAATGGACTGGGCCTTCTTCTTCTTCTTCTTCTTCTTTTTTAA  150

seq1  AAATTAGATATTTTCTTTATTTATATATCAAATGTTATCCTCTTTCCTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATATTTTCTTTATTTATATATCAAATGTTATCCTCTTTCCTAG  200

seq1  TTTCCCTTCTAAAAATCTCCTATCCCCTCCACCATCCCTCTACTTACTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCTAAAAATCTCCTATCCCCTCCACCATCCCTCTACTTACTGG  250

seq1  TTGTTCTTTGGTGGTGGTGGTGGTTTCTTGGGTTTTTTTTTTTTTTTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTGGTGGTGGTGGTGGTTTCTTGGGTTTTTTTTTTTTTTTTTT  300

seq1  TTTTTTTGGTTGTTTGGTTCTTTTGTTTAGTTGACTGTTTTGTTATGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTTGTTTGGTTCTTTTGTTTAGTTGACTGTTTTGTTATGTTT  350

seq1  TCATCCTGCTTTAATCCACAGATAGTATTTTACTTTCTATACTGCTACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGCTTTAATCCACAGATAGTATTTTACTTTCTATACTGCTACTT  400

seq1  GAGTTTAAAATTTTGTTACATCTAAGTATTTTTTAAAGATCCATGAAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAAAATTTTGTTACATCTAAGTATTTTTTAAAGATCCATGAAATA  450

seq1  CTGAACTAAACTGTAAGTAAATCCCACTTTTGTGCCATAATGGCAAGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTAAACTGTAAGTAAATCCCACTTTTGTGCCATAATGGCAAGATT  500

seq1  TAAAAACTAATGTCTTTCCCTTAAACTGCTCCACAAAATCTAAATAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTAATGTCTTTCCCTTAAACTGCTCCACAAAATCTAAATAAAAA  550

seq1  TCTCATTATACACTCTGGATCTGGCTTAACTAAGAGGGAAAAAATGAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTATACACTCTGGATCTGGCTTAACTAAGAGGGAAAAAATGAGGA  600

seq1  AGAAAAAACGATTTTATATAGACTGCTACTCTAGAAAAATGTATGTAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACGATTTTATATAGACTGCTACTCTAGAAAAATGTATGTAAAT  650

seq1  TATTTAAATACTAATTTCTCATTACAAGCAAGGCATTTGTAATCTTCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATACTAATTTCTCATTACAAGCAAGGCATTTGTAATCTTCCTT  700

seq1  GTGCATAAATGTGTCACTTTGATCTGTTCAAACTAGCTTCAAATATGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAAATGTGTCACTTTGATCTGTTCAAACTAGCTTCAAATATGTGG  750

seq1  CAATGGAATTC  760
      |||||||||||
seq2  CAATGGAATTC  761

seq1: chr3_125493436_125494241
seq2: B6Ng01-056P03.g_68_873

seq1  GAATTCATCAGGCAAAAGGGCTTGATACCAACACTGAAGACCTGAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGGCAAAAGGGCTTGATACCAACACTGAAGACCTGAATTTC  50

seq1  CTTCCCACTCTGCACATGGTGGAAGGAGAGCATAATATCTCTCATTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACTCTGCACATGGTGGAAGGAGAGCATAATATCTCTCATTAATG  100

seq1  CCATTAATGAAGCCTGAAGGTTACACTAGAGAGAGAGAAAAATTATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATGAAGCCTGAAGGTTACACTAGAGAGAGAGAAAAATTATGGCT  150

seq1  CAAGAATGTTAATATTTTTGCTGAAATTAAATTTGTGTTAGGTAGGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGTTAATATTTTTGCTGAAATTAAATTTGTGTTAGGTAGGAATA  200

seq1  TTATCTCAGTATGTCCCTGTGAAATTCCATTCTTTTTAAAACTCCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGTATGTCCCTGTGAAATTCCATTCTTTTTAAAACTCCCTGGA  250

seq1  GCTGGGAAAATGGCTTAGTCAGAAAAGTACTTCCCTTGCTACATGAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAAAATGGCTTAGTCAGAAAAGTACTTCCCTTGCTACATGAGAAC  300

seq1  ATAAATTCAACCCCTGCAAGCCATGTTGCAAAAAGAAAAGAAAAGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCAACCCCTGCAAGCCATGTTGCAAAAAGAAAAGAAAAGAAGGA  350

seq1  AAGAAAAAGAAAAGGAAAAGGAAAGGAAAAAAGGCATAATCCTGAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGAAAAGGAAAAGGAAAGGAAAAAAGGCATAATCCTGAAGTCA  400

seq1  AGACAATGGAAGTAGGTAAAACTCTACAGCTCAAGGGCTAGCCTGGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGGAAGTAGGTAAAACTCTACAGCTCAAGGGCTAGCCTGGGGTA  450

seq1  ACCAGTGAGGCCAAGATCTCTGTGAGATACACTGTCTCAGTAAAGGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGAGGCCAAGATCTCTGTGAGATACACTGTCTCAGTAAAGGTAGA  500

seq1  CAATTCTTGAAGAATCCCAGTAGATTTCCTTAGACTTTTTTTCACATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTGAAGAATCCCAGTAGATTTCCTTAGACTTTTTTTCACATATG  550

seq1  CAACCCCCCCCCCACACACACACACAAATATATATGCATACGCACACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCCCCCCACACACACACACAAATATATATGCATACGCACACAGA  600

seq1  TTCCTTGTACTCTTTTAATCACAGTACAGATGAAGGATTCACCAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTACTCTTTTAATCACAGTACAGATGAAGGATTCACCAAAAAAA  650

seq1  GGGCAGGAGATATATGTAGATATTGGTTCTCATGTCTGCTCTTCGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAGATATATGTAGATATTGGTTCTCATGTCTGCTCTTCGTATTT  700

seq1  TCTTTATCTGATTGAAGTAGCACCCTTCATAGCCGGCTCCACATCTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTGATTGAAGTAGCACCCTTCATAGCCGGCTCCACATCTAGAT  750

seq1  GTGTGAAGGTGAGGCTAGAATCCTCCCTGCATTAGTGTGTGTGTGGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGGTGAGGCTAGAATCCTCCCTGCATTAGTGTGTGTGTGGGGGG  800

seq1  GGGGGG  806
      ||||||
seq2  GGGGGG  806