BAC Information

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BAC

Clone NameB6Ng01-057G13
Chromosome3 (Build37)
Map Location 44,976,348 - 45,131,633
singlet/doubletdoublet
Overlap geneLOC100039296
Upstream geneLOC676484
Downstream genePcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057G13.bB6Ng01-057G13.g
ACCDH879286DH879287
length1,023826
definitionDH879286|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G13, 5' end.DH879287|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,976,348 - 44,977,386)(45,130,810 - 45,131,633)
sequence
gaattccttcatgtcttcataagaaagtatcccaagtcgacgcattgcaa
acagacaatttacataggattcctctccactgtaaattcattcatggtat
tacaagcaattgcaaattgcaaatgttttgcacactgtttgaacaaatac
tgttttgtcctctctgaaccccttgatagtgttcatgggaaccacatact
tataagaaattaccacagtgtttgtaaacataaggtttctctccactgtg
aatctattcacagtattgaaggcaagagtttaccttgaaagttttaccac
attgctaacatggaaaaagcatttctcaggtgtaaaaatgaactggaaca
gacagtctttactgagtaaactacaagaaaagctggattctcactggatg
tttccatatctctctaaatgtctaaaagccttttccaagattcttataaa
gacattctgtctagaacattttttcatggactttaagataactatgtctt
attttattgaagtttttctgattgtatacagtctgaactaggatgagaac
atgtatttcacatggctttactctatgggtattttgcttggtaaggtatt
tgtattctagaaatcagatatatttttctccacattatattctctatgtt
gtcagactcttaatactgtccaacttcttacaattcttctggtgttttca
taatcatttgcattgttctagtcttcttgactttctcttaaagtagccag
attccagattttcttgcatcaaatctctgtatatcttcatttgggaagaa
tctagagaaaattgctcttacagggcaaactttctaaatggctccagtct
ccttggagtcaattagaacattagtgagaaatgagactatctacttgatg
agtcagcaaagagacctgtctatgttggtatacctaccctttggctgagg
caggggcattggcagaacatacagtttagatccagtattcggggccttgc
actgaagtatatcttccttcccc
gaattcatattattcatcattagtaaatatcatttgaaactgtgatataa
gttgtatgataaagaaatgttaagtttctctactgacttttgcttctttt
tgtctctatttcatgattgcttttgaccccttgtggctcaaagcaccctt
tgaggcttcctggagagcttcttttaaaatagattgtgtttcatatacct
tgaatagcatatcccagtaatatacagacatgtgtttttgttaaaaaaaa
aaaaaaaacatgggagaggggattatttcctgatattttaattaatctca
ggtttggtttggtttgttttctttaagtgacacagcgtacttagaggatg
ccgattggaaagtgcatttcttccatttataccacagctctgataagaaa
tgtaggcattgttataaagcattctcttgtattatgtctaaggacttgca
tctctacctagaatatcatcttctctttagtatcaactgtgagaatttgg
gaatgaaagtgttcttggaaatcatttcagcaaatatttatgtctcacag
gattgtccttctcacgctagtccacacacaatcctcatcattttgataag
atagcatgaaagtctctttatcgcttgtggatccagcactttgggttcag
gtgagtagctttttacctatggttctatacgtggagctagccacaattct
cagtgcgttttagcttccactcaattctctttctattgtgggtatattgt
agttgttatgaatactatattgataaattcatcgttgtttctctaataga
atttaacattgaaggtttgagtggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44976348_44977386
seq2: B6Ng01-057G13.b_45_1067

seq1  GAATTCCTTCATGTCTTCATAAGAAAGTATCCCAAGTCGACGCATTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATGTCTTCATAAGAAAGTATCCCAAGTCGACGCATTGCAA  50

seq1  ACAGACAATTTACATAGGATTCCTCTCCACTGTAAATTCATTCATGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAATTTACATAGGATTCCTCTCCACTGTAAATTCATTCATGGTAT  100

seq1  TACAAGCAATTGCAAATTGCAAATGTTTTGCACACTGTTTGAACAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCAATTGCAAATTGCAAATGTTTTGCACACTGTTTGAACAAATAC  150

seq1  TGTTTTGTCCTCTCTGAACCCCTTGATAGTGTTCATGGGAACCACATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTCCTCTCTGAACCCCTTGATAGTGTTCATGGGAACCACATACT  200

seq1  TATAAGAAATTACCACAGTGTTTGTAAACATAAGGTTTCTCTCCACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAATTACCACAGTGTTTGTAAACATAAGGTTTCTCTCCACTGTG  250

seq1  AATCTATTCACAGTATTGAAGGCAAGAGTTTACCTTGAAAGTTTTACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTCACAGTATTGAAGGCAAGAGTTTACCTTGAAAGTTTTACCAC  300

seq1  ATTGCTAACATGGAAAAAGCATTTCTCAGGTGTAAAAATGAACTGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAACATGGAAAAAGCATTTCTCAGGTGTAAAAATGAACTGGAACA  350

seq1  GACAGTCTTTACTGAGTAAACTACAAGAAAAGCTGGATTCTCACTGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTTTACTGAGTAAACTACAAGAAAAGCTGGATTCTCACTGGATG  400

seq1  TTTCCATATCTCTCTAAATGTCTAAAAGCCTTTTCCAAGATTCTTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATCTCTCTAAATGTCTAAAAGCCTTTTCCAAGATTCTTATAAA  450

seq1  GACATTCTGTCTAGAACATTTTTTCATGGACTTTAAGATAACTATGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTGTCTAGAACATTTTTTCATGGACTTTAAGATAACTATGTCTT  500

seq1  ATTTTATTGAAGTTTTTCTGATTGTATACAGTCTGAACTAGGATGAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGAAGTTTTTCTGATTGTATACAGTCTGAACTAGGATGAGAAC  550

seq1  ATGTATTTCACATGGCTTTACTCTATGGGTATTTTGCTTGGTAAGGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTCACATGGCTTTACTCTATGGGTATTTTGCTTGGTAAGGTATT  600

seq1  TGTATTCTAGAAATCAGATATATTTTTCTCCACATTATATTCTCTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTAGAAATCAGATATATTTTTCTCCACATTATATTCTCTATGTT  650

seq1  GTCAGACTCTTAATACTGTCCAACTTCTTACAATTCTTCTGGTGTTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACTCTTAATACTGTCCAACTTCTTACAATTCTTCTGGTGTTTTCA  700

seq1  TAATCATTTGCATTGTTCTAGTCTTCTTGACTTTCTCTTAAAGTAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTGCATTGTTCTAGTCTTCTTGACTTTCTCTTAAAGTAGCCAG  750

seq1  ATTCCAGATTTTCTTGCATCAAATCTCTGTATATCTTCATTTGGGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGATTTTCTTGCATCAAATCTCTGTATATCTTCATTTGGGAAGAA  800

seq1  TCTAGAGAAAATTGCTCTTACAGGGCAAACTTTCTAAATGGCTCCAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAAAATTGCTCTTACAGGGCAAACTTTCTAAATGGCTCCAGTCT  850

seq1  CCTTGGAGTCAATTAGAACATTAAGTGAGAAAATGAGACTATCTACTTGA  900
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  CCTTGGAGTCAATTAGAACATT-AGTGAG-AAATGAGACTATCTACTTGA  898

seq1  TGAGTCAGCAAAGGAGACATGTCCTATGTTGTTATTACCTACCTTATGTG  950
      |||||||||||| ||||| ||| |||||||| || |||||||| | || |
seq2  TGAGTCAGCAAA-GAGACCTGT-CTATGTTGGTA-TACCTACCCTTTG-G  944

seq1  CTGAGGCCAGGGGGCAATTGAGCAAGAGCATACAGTTTAAGATCCAAGTA  1000
      |||||| ||||||   |||| || ||| |||||||||| |||||| ||||
seq2  CTGAGG-CAGGGG--CATTG-GC-AGAACATACAGTTT-AGATCC-AGTA  987

seq1  CTCTGGGGCCTTGCAACTGATGTTATATCTTCCTTCCCC  1039
       || |||||||||| ||||| | ||||||||||||||||
seq2  TTC-GGGGCCTTGC-ACTGAAG-TATATCTTCCTTCCCC  1023

seq1: chr3_45130810_45131633
seq2: B6Ng01-057G13.g_69_894 (reverse)

seq1  GACC-CTCAAACCTTCATTGTTAAATTCTATATAGAGAAAACAACGATGA  49
      |||| |||||||||||| ||||||||||||| ||||| ||||||||||||
seq2  GACCACTCAAACCTTCAATGTTAAATTCTAT-TAGAG-AAACAACGATGA  48

seq1  TTTTATACAATATAGTATTCATATACAACTACAATATACCCACAATAGAA  99
       ||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTTAT-CAATATAGTATTCATA-ACAACTACAATATACCCACAATAGAA  96

seq1  AGAGAATTGAGTGGAAGCTAAAACGCACTGAGAATTGTGGCTAGCTCCAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTGAGTGGAAGCTAAAACGCACTGAGAATTGTGGCTAGCTCCAC  146

seq1  GTATAGAACCATAGGT-AAAAGCTACTCACCTGAA-CCAAAGTGCTGGAT  197
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  GTATAGAACCATAGGTAAAAAGCTACTCACCTGAACCCAAAGTGCTGGAT  196

seq1  CCACAAGCGAT-AAGAGAC-TTCATGCTATCTTATCAAAATGATGAGGAT  245
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  CCACAAGCGATAAAGAGACTTTCATGCTATCTTATCAAAATGATGAGGAT  246

seq1  TGTGTGTGGACTAGCGTGAGAAGGACAATCCTGTGAGACATAAATATTTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGACTAGCGTGAGAAGGACAATCCTGTGAGACATAAATATTTG  296

seq1  CTGAAATGATTTCCAAGAACACTTTCATTCCCAAATTCTCACAGTTGATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGATTTCCAAGAACACTTTCATTCCCAAATTCTCACAGTTGATA  346

seq1  CTAAAGAGAAGATGATATTCTAGGTAGAGATGCAAGTCCTTAGACATAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGAAGATGATATTCTAGGTAGAGATGCAAGTCCTTAGACATAAT  396

seq1  ACAAGAGAATGCTTTATAACAATGCCTACATTTCTTATCAGAGCTGTGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAATGCTTTATAACAATGCCTACATTTCTTATCAGAGCTGTGGT  446

seq1  ATAAATGGAAGAAATGCACTTTCCAATCGGCATCCTCTAAGTACGCTGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGAAGAAATGCACTTTCCAATCGGCATCCTCTAAGTACGCTGTG  496

seq1  TCACTTAAAGAAAACAAACCAAACCAAACCTGAGATTAATTAAAATATCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAAGAAAACAAACCAAACCAAACCTGAGATTAATTAAAATATCA  546

seq1  GGAAATAATCCCCTCTCCCATG-TTTTTTTTTTTTTTTAACAAAAACACA  594
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAAATAATCCCCTCTCCCATGTTTTTTTTTTTTTTTTAACAAAAACACA  596

seq1  TGTCTGTATATTACTGGGATATGCTATTCAAGGTATATGAAACACAATCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTATATTACTGGGATATGCTATTCAAGGTATATGAAACACAATCT  646

seq1  ATTTTAAAAGAAGCTCTCCAGGAAGCCTCAAAGGGTGCTTTGAGCCACAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGAAGCTCTCCAGGAAGCCTCAAAGGGTGCTTTGAGCCACAA  696

seq1  GGGGTCAAAAGCAATCATGAAATAGAGACAAAAAGAAGCAAAAGTCAGTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAAAAGCAATCATGAAATAGAGACAAAAAGAAGCAAAAGTCAGTA  746

seq1  GAGAAACTTAACATTTCTTTATCATACAACTTATATCACAGTTTCAAATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTTAACATTTCTTTATCATACAACTTATATCACAGTTTCAAATG  796

seq1  ATATTTACTAATGATGAATAATATGAATTC  824
      ||||||||||||||||||||||||||||||
seq2  ATATTTACTAATGATGAATAATATGAATTC  826