BAC Information

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BAC

Clone NameB6Ng01-057J06
Chromosome3 (Build37)
Map Location 89,166,421 - 89,325,475
singlet/doubletdoublet
Overlap geneDcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
Upstream genePaqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057J06.bB6Ng01-057J06.g
ACCDH879407DH879408
length95328
definitionDH879407|Mus musculus domesticus DNA, BAC clone: B6Ng01-057J06, 5' end.DH879408|Mus musculus domesticus DNA, BAC clone: B6Ng01-057J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,166,421 - 89,166,515)(89,325,148 - 89,325,475)
sequence
gaattctaattaaacacagaatgaagccgtgcaaagcggaggaggactta
ttgggaagaaaggtttcacgggtgggggtggggcagggggagggg
tcacaggaccatggaagaaaaacatgggaagttaggaaatctctcaaaat
caatctctctctctctctctctctctctctctctctctctctctctctcg
tctactgtctccttttgttgaatgtttaaagagaaaccacagtcccttcc
ttttatgacaaaccccaagacagttcggtctctatcaccataacaacaat
tccaaacatcccaaaaatcagagcatggtcactcagtcgctttctctttt
caaacagggccctcctgtgtcccatcttatagccaatgttttggtttttc
cgtttgttggctttggggaagggggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89166421_89166515
seq2: B6Ng01-057J06.b_38_132

seq1  GAATTCTAATTAAACACAGAATGAAGCCGTGCAAAGCGGAGGAGGACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTAAACACAGAATGAAGCCGTGCAAAGCGGAGGAGGACTTA  50

seq1  TTGGGAAGAAAGGTTTCACGGGTGGGGGTGGGGCAGGGGGAGGGG  95
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAAAGGTTTCACGGGTGGGGGTGGGGCAGGGGGAGGGG  95

seq1: chr3_89325148_89325475
seq2: B6Ng01-057J06.g_76_403 (reverse)

seq1  GCACCACCTTCCCCAAAGCCAACAAGCGGAAAAACCAAAACATTGGCTAT  50
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCACCCCCTTCCCCAAAGCCAACAAACGGAAAAACCAAAACATTGGCTAT  50

seq1  AAGCTGGGACACAGGAGGGCCCTGTTTGAAAAGAGAAAGCGACTGAGTGA  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGACACAGGAGGGCCCTGTTTGAAAAGAGAAAGCGACTGAGTGA  100

seq1  CTATGCTCTGATTTTTGGGATGTTTGGAATTGTTGTTATGGTGATAGAGA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTCTGATTTTTGGGATGTTTGGAATTGTTGTTATGGTGATAGAGA  150

seq1  CCGAACTGTCTTGGGGTTTGTACTCAAAGGTAGGGACTGTGGTTTCTCTT  200
      |||||||||||||||||||||  | ||||| |||||||||||||||||||
seq2  CCGAACTGTCTTGGGGTTTGTCATAAAAGGAAGGGACTGTGGTTTCTCTT  200

seq1  TATACATTCAACAAAAGGAGTATGTAGACGAGAGAGAGAGAGAGAGAGAG  250
      || |||||||||||||||||   |||||||||||||||||||||||||||
seq2  TAAACATTCAACAAAAGGAGACAGTAGACGAGAGAGAGAGAGAGAGAGAG  250

seq1  AGAGAGAGAGAGAGAGAGAGAGAGATTGATTTTGAGAGATTTCCTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGATTGATTTTGAGAGATTTCCTAACTT  300

seq1  CCCATGTTTTTCTTCCATGGTCCTGTGA  328
      ||||||||||||||||||||||||||||
seq2  CCCATGTTTTTCTTCCATGGTCCTGTGA  328