BAC Information

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BAC

Clone NameB6Ng01-057L05
Chromosome3 (Build37)
Map Location 146,335,964 - 146,473,372
singlet/doubletdoublet
Overlap geneGm1652, LOC670100, Prkacb
Upstream geneDdah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik
Downstream geneLOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057L05.bB6Ng01-057L05.g
ACCDH879492DH879493
length1,09599
definitionDH879492|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L05, 5' end.DH879493|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,335,964 - 146,337,081)(146,473,274 - 146,473,372)
sequence
gaattccacaactcttttattattttttaaccattacagctctctttcag
tttatgagagaaaaggagcctcggatcctggctcctgattacggcaatgt
atcagtcatgctgcgctttccctaagactctttctatacggtacttattt
ttacactcagaaatggactctaactttgtactgcttttatttttatgact
tatttttaaatcaaattatgccactctttgcccgtgttttaaaatagcct
ttggctaaaagtaatttaactccaattataataaattaatgttgatctct
ttgcttataaaaaaaaaaacctaagaactcagcaactaaacgggatttca
ctttctctccattccccgcccccttctcgcatcatagcagcgagcagaga
tctggataaaggctgacccaggaaaaggaaggaacggttcaaaggttctg
ggatatttttttttcacttaaaaatattcagataagtgggggtgggcaca
ttcagctgcaccgtacccaagggataagatttctgggaagcaaatagctc
atgaggctttctgtgtgttctcaggtccaaggctgagaactcagagcggt
gatttcaagacagctttggtttggattgaatcaaatggacaacaggctca
actctagcttgcccatgattttgcttgtgccacttaaatcctcctctatg
ttttacttctagacatgaagggtctactctcttgatttaagtagcagttt
aaatgcccccttctgaatatcgccagtaaatgtttcattacagttattaa
ttaataaaatgttaatgagtctatgatgagacagacacttgataaacact
ggaacccaacggcctcatggaaaggacgctagcaaggcagtattttggaa
ttggctgggtgtgtgtggtcatgccttttccaactgtgaatacatgaaat
acaatgcagatctaagaagaaatctgtgttcaccagagatatgcacatgg
aactacacactgttataaacatgcgaaatgtgacacttccaatatgtttg
ttgatgacatgtaagtaacatttttgtagttaatacaccaccact
tagagcttaattctaaaaatactcccaaggaatgaagttgggtataaagg
taaatgaacaggctttggggggttgtttttgttttgtttgggggaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146335964_146337081
seq2: B6Ng01-057L05.b_45_1139

seq1  GAATTCCACAACTCTTTTATTATTTTTTAACCATTACAGCTCTCTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAACTCTTTTATTATTTTTTAACCATTACAGCTCTCTTTCAG  50

seq1  TTTATGAGAGAAAAGGAGCCTCGGATCCTGGCTCCTGATTACGGCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGAGAAAAGGAGCCTCGGATCCTGGCTCCTGATTACGGCAATGT  100

seq1  ATCAGTCATGCTGCGCTTTCCCTAAGACTCTTTCTATACGGTACTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCATGCTGCGCTTTCCCTAAGACTCTTTCTATACGGTACTTATTT  150

seq1  TTACACTCAGAAATGGACTCTAACTTTGTACTGCTTTTATTTTTATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTCAGAAATGGACTCTAACTTTGTACTGCTTTTATTTTTATGACT  200

seq1  TATTTTTAAATCAAATTATGCCACTCTTTGCCCGTGTTTTAAAATAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAATCAAATTATGCCACTCTTTGCCCGTGTTTTAAAATAGCCT  250

seq1  TTGGCTAAAAGTAATTTAACTCCAATTATAATAAATTAATGTTGATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAAAAGTAATTTAACTCCAATTATAATAAATTAATGTTGATCTCT  300

seq1  TTGCTTATAAAAAAAAAAACCTAAGAACTCAGCAACTAAACGGGATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATAAAAAAAAAAACCTAAGAACTCAGCAACTAAACGGGATTTCA  350

seq1  CTTTCTCTCCATTCCCCGCCCCCTTCTCGCATCATAGCAGCGAGCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCATTCCCCGCCCCCTTCTCGCATCATAGCAGCGAGCAGAGA  400

seq1  TCTGGATAAAGGCTGACCCAGGAAAAGGAAGGAACGGTTCAAAGGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATAAAGGCTGACCCAGGAAAAGGAAGGAACGGTTCAAAGGTTCTG  450

seq1  GGATATTTTTTTTTCACTTAAAAATATTCAGATAAGTGGGGGTGGGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTTTTTTCACTTAAAAATATTCAGATAAGTGGGGGTGGGCACA  500

seq1  TTCAGCTGCACCGTACCCAAGGGATAAGATTTCTGGGAAGCAAATAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGCACCGTACCCAAGGGATAAGATTTCTGGGAAGCAAATAGCTC  550

seq1  ATGAGGCTTTCTGTGTGTTCTCAGGTCCAAGGCTGAGAACTCAGAGCGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTTTCTGTGTGTTCTCAGGTCCAAGGCTGAGAACTCAGAGCGGT  600

seq1  GATTTCAAGACAGCTTTGGTTTGGATTGAATCAAATGGACAACAGGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAGACAGCTTTGGTTTGGATTGAATCAAATGGACAACAGGCTCA  650

seq1  ACTCTAGCTTGCCCATGATTTTGCTTGTGCCACTTAAATCCTCCTCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCTTGCCCATGATTTTGCTTGTGCCACTTAAATCCTCCTCTATG  700

seq1  TTTTACTTCTAGACATGAAGGGTCTACTCTCTTGATTTAAGTAGCAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCTAGACATGAAGGGTCTACTCTCTTGATTTAAGTAGCAGTTT  750

seq1  AAATGCCCCCTTCTGAATATCGCCAGTAAATGTTTCATTACAGTTATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCCCTTCTGAATATCGCCAGTAAATGTTTCATTACAGTTATTAA  800

seq1  TTAATAAAATGTTAATGAGTCTATGATGAGACAGACACTTGATAAACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAATGTTAATGAGTCTATGATGAGACAGACACTTGATAAACACT  850

seq1  GGAACCCAACGGCCTCATGGAAAGGACGCTAGCAAGGCAGTATTTTTGGA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAACCCAACGGCCTCATGGAAAGGACGCTAGCAAGGCAGTA-TTTTGGA  899

seq1  ATTGGCTGGGTGTGTGTGGTCATGCCTTTTCCAACTGTGAATTACATGAA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTGGCTGGGTGTGTGTGGTCATGCCTTTTCCAACTGTGAA-TACATGAA  948

seq1  ATACAAATGCAGATCTAAGAAGAAAATCTGTGTTCAACCAGAGATATGCA  1000
      |||| ||||||||||||||||| |||||||||||| ||||||||||||||
seq2  ATAC-AATGCAGATCTAAGAAG-AAATCTGTGTTC-ACCAGAGATATGCA  995

seq1  GCAATGGAAACTACACAACATGTTAATAAAACATGGCAGAAATGTGACAC  1050
         |||| |||||||||   |||||   |||||||   ||||||||||||
seq2  --CATGG-AACTACACA--CTGTTA--TAAACATG--CGAAATGTGACAC  1036

seq1  ATCCCAATAATGTTATGTTGATGACATGTTAAAGTAACATTTTTGATAGT  1100
       | ||||| ||||| ||||||||||||||  |||||||||||||| ||||
seq2  -TTCCAAT-ATGTT-TGTTGATGACATGT--AAGTAACATTTTTG-TAGT  1080

seq1  TAAATACAGCACACCACT  1118
      | ||||||   |||||||
seq2  T-AATACA--CCACCACT  1095

seq1: chr3_146473274_146473372
seq2: B6Ng01-057L05.g_75_173 (reverse)

seq1  AACCTCCCCCAAACAAAACAAAAACAACCCCCCAAAGCCTGTTCATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCCCAAACAAAACAAAAACAACCCCCCAAAGCCTGTTCATTTAC  50

seq1  CTTTATACCCAACTTCATTCCTTGGGAGTATTTTTAGAATTAAGCTCTA  99
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACCCAACTTCATTCCTTGGGAGTATTTTTAGAATTAAGCTCTA  99