BAC Information

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BAC

Clone NameB6Ng01-058A02
Chromosome3 (Build37)
Map Location 45,247,723 - 45,248,489
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A02.bB6Ng01-058A02.g
ACCDH879703DH879704
length1,219948
definitionDH879703|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A02, 5' end.DH879704|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaattttccccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaagttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctagttcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgaagtttttatcatac
agatctttcactttcttcgttagagtcacgccgagatatattatattatt
tgtggctattgaggaagggggttgttttcctaatttcttttctcagccgt
ttattctttgtggtgaagaaaggcattggacttgttgagttaatttttta
tccagctacttcacccaagctgtttatcaggttaagaagttcgttgggaa
tttaggtcacttacaactaacattactctgcaacagggaatgactcctct
tcacttgttccctcgatcccttttggtcaatgcctggctacctcaaactt
gtgaaaaggggtaaggtat
gaattcattactggataaaaaaaaaatgattcaatacagcaataaagaaa
tgaagaaaagagtttctggaattgaataaaaatgaatacactgcgtacaa
atttatgggacacacacaaaaaaaatggtgctaagaggaaagttcaaata
ctaagagactacacaaaaagaaaaatgaaaaacagaaaataaaataggaa
agaaagatctaacaaattaacagcacacctgaaagctctacaacaaaaga
tgtaatcatattcaagaggaagacaagacaagaaatcaattcagggctgc
aattgatagaatagaaacaaagagcaaaacaaagaatcaataaaatgaag
aattggtcctttgaagaaatcaactaaatagataaaccatttttcaacta
cctaaaggcagagagagaatatctaaagtaataaaatcagaaaggaaaag
gaggcatatcatagacatagagaaaatcatgagaatcactttattatatt
ttgttttgtcatgtttggtttttatctcttagaagcctgttgtgttcttt
tgatagaaagagagtagatgcaaaggagagcagaggtggggaggaattgg
aagaagtagaaggtggagaaactataatcagcctacagtgtaagagaaaa
gaacctatttttcattaaaaagaagagaagcataccgaaaataaaaggac
acaagtttaaatgactttttatcaccatattcaaacaaaaatatctttca
ttcatttgaaaagttttagtattttaaataaaataaaataaataaaccat
aagctttatctttatttcagtatacttttattctactgcttctcaaagaa
acaaagaggtttctaagacatacaaaattaattcaggaaatttatagcat
gctactatagcccatagaggttacttggatgtgtggtatgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45247723_45248489
seq2: B6Ng01-058A02.g_244_1012

seq1  AAACAGAAAATAAAATAGGAAAGAAAGATCTAACAAATTAACAGCACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAATAAAATAGGAAAGAAAGATCTAACAAATTAACAGCACACC  50

seq1  TGAAAGCTCTACAACAAAAGATGTAATCATATTCAAGAGGAAGACAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTCTACAACAAAAGATGTAATCATATTCAAGAGGAAGACAAGAC  100

seq1  AAGAAATCAATTCAGGGCTGCAATTGATAGAATAGAAACAAAGAGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAATTCAGGGCTGCAATTGATAGAATAGAAACAAAGAGCAAAA  150

seq1  CAAAGAATCAATAAAATGAAGAATTGGTCCTTTGAAGAAATCAACTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATCAATAAAATGAAGAATTGGTCCTTTGAAGAAATCAACTAAAT  200

seq1  AGATAAACCATTTTTCAACTACCTAAAGGCAGAGAGAGAATATCTAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACCATTTTTCAACTACCTAAAGGCAGAGAGAGAATATCTAAAGT  250

seq1  AATAAAATCAGAAAGGAAAAGGAGGCATATCATAGACATAGAGAAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCAGAAAGGAAAAGGAGGCATATCATAGACATAGAGAAAATCA  300

seq1  TGAGAATCACTTTATTATATTTTGTTTTGTCATGTTTGGTTTTTATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCACTTTATTATATTTTGTTTTGTCATGTTTGGTTTTTATCTCT  350

seq1  TAGAAGCCTGTTGTGTTCTTTTGATAGAAAGAGAGTAGATGCAAAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCTGTTGTGTTCTTTTGATAGAAAGAGAGTAGATGCAAAGGAGA  400

seq1  GCAGAGGTGGGGAGGAATTGGAAGAAGTAGAAGGTGGAGAAACTATAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTGGGGAGGAATTGGAAGAAGTAGAAGGTGGAGAAACTATAATC  450

seq1  AGCCTACAGTGTAAGAGAAAAGAACCTA-TTTTCATT-AAAAGAAGAGAA  498
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  AGCCTACAGTGTAAGAGAAAAGAACCTATTTTTCATTAAAAAGAAGAGAA  500

seq1  GCATACCG-AAATAAAAGGACACAAGTTTAAATGACTTTTTATCACCATA  547
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCGAAAATAAAAGGACACAAGTTTAAATGACTTTTTATCACCATA  550

seq1  TTCAAAC-AAAATATCTTTCATTCATTTGAAAAGTTTTAGTATTTTAAAT  596
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAAAAATATCTTTCATTCATTTGAAAAGTTTTAGTATTTTAAAT  600

seq1  AAAATAAAATAAATAAACCATAAGCTTTATCTTTATTTCAGTATACTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATAAATAAACCATAAGCTTTATCTTTATTTCAGTATACTTTT  650

seq1  AATTCTACTGCTTCTCAAAGAAACAAAGAGGTTTCTAAGACATACAAAAT  696
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATTCTACTGCTTCTCAAAGAAACAAAGAGGTTTCTAAGACATACAAAAT  699

seq1  TAATTTCAGGAAATTTATAGCATGCTACTATAGCCCATAGAGGTTACTTT  746
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAA-TTCAGGAAATTTATAGCATGCTACTATAGCCCATAGAGGTTAC-TT  747

seq1  GAATGTGT-GTATGTGTGTGTG  767
      | |||||| |||||||||||||
seq2  GGATGTGTGGTATGTGTGTGTG  769