BAC Information

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BAC

Clone NameB6Ng01-058B03
Chromosome3 (Build37)
Map Location 26,876,359 - 26,968,150
singlet/doubletdoublet
Overlap geneSpata16, LOC665258
Upstream geneNlgn1, LOC229152
Downstream geneEct2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058B03.bB6Ng01-058B03.g
ACCDH879749DH879750
length5481,041
definitionDH879749|Mus musculus domesticus DNA, BAC clone: B6Ng01-058B03, 5' end.DH879750|Mus musculus domesticus DNA, BAC clone: B6Ng01-058B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,876,359 - 26,876,896)(26,967,091 - 26,968,150)
sequence
gaattccaattgattaggatatgttggtaatatttattttcatatgagat
attaagataaagtgattgttatttttgttgttagagatggaattttgttt
gtatgagtttgttgaaagattgctttcttgctttttctagggtgtagttt
cactccttgtgttggtgttttccatctgttatcctttgtagggctggatt
tgtggaaagatattgtgtaaattcagtcttgtcatggaataccttggttt
ttccatttactgtaattgagagttttgctggaaatggtagcctgggctgg
catttgtgttctcttagtgtctgtatgatatttgcccaggatcttcttgc
tttcacagtctctggtgagaagtctggtgtaattctgataggcctgcctt
tatatgttacttgacctttttcccttactgcttttaatattctttctttg
tttagtgcatttggtgttttgattattatgtgatgagaggaatttctttt
ctggtcaagtctatttggagttctgtaggcttcttgtatattcatggg
caaaagcacagactgagaaatgtaagcacacaaaaatattttttttcaag
tctttcctgactgaatgaaaatgcaagtgaccaactaggatgaactactg
tgacagacatattttctaaatagatgtctacagggcttgtagagatagag
agacaaagaccaagacttcatagtcaaaggtatgtgggtgaagactacca
acaagcacaaagtacaaaataatgtcagcataagaaaaatgttcaaattc
acttacaagttttcatcagatgctgaagctaggaagcaggtactgatctg
tcagtgatgctgtgaggacagacatttcctcctaagtttctggtaggagt
tcataagagttccactgtgttactttctcttcttgttgctgtgagaagat
acctgactaaaatggaggatggacagacaggcagacagacagaaggaggg
aaggaaggaaggttttgttttgtcttatagtttaaagagacacagtccat
cattatggtacagaggcatagctgttggagcataaaataactggtcacgt
tatgtcaggaagcagagaaataaatattgaattgatattcagcttccctt
ttttttttgcttgttaatatcagtaccccagcttatgtgattgttttgtt
catattcagggtcatgctccatatttttgccaaatcttcctggatacact
ctgtagacacactcagaggtgtttccacgtgtctctaaatccagtcaagt
tgacagtggagatgattaaccactgggaagcaagttgtcagacgtaacac
aaggtatattcacctgcatgttaatttttggtatctactcagaagacttt
ctcaaagcacataatagttgagtgaagttatgtgtcccagcatctttgta
ttgtaaggcattagggagctactaactccgatgcatagactgtagtcgat
agcttcatgcatacaaggggtgcacgtcctgtgaagaagatttgagacca
caatgacgaggagatgagcatctctaggtggtactagtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26876359_26876896
seq2: B6Ng01-058B03.b_45_582

seq1  GAATTCCAATTGATTAGGATATGTTGGTAATATTTATTTTCATATGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTGATTAGGATATGTTGGTAATATTTATTTTCATATGAGAT  50

seq1  ATTAAGATAAAGTGATTGTTATTTTTGTTGTTAGAGATGGAATTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATAAAGTGATTGTTATTTTTGTTGTTAGAGATGGAATTTTGTTT  100

seq1  GTATGAGTTTGTTGAAAGATTGCTTTCTTGCTTTTTCTAGGGTGTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTTTGTTGAAAGATTGCTTTCTTGCTTTTTCTAGGGTGTAGTTT  150

seq1  CACTCCTTGTGTTGGTGTTTTCCATCTGTTATCCTTTGTAGGGCTGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTGTGTTGGTGTTTTCCATCTGTTATCCTTTGTAGGGCTGGATT  200

seq1  TGTGGAAAGATATTGTGTAAATTCAGTCTTGTCATGGAATACCTTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGATATTGTGTAAATTCAGTCTTGTCATGGAATACCTTGGTTT  250

seq1  TTCCATTTACTGTAATTGAGAGTTTTGCTGGAAATGGTAGCCTGGGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTACTGTAATTGAGAGTTTTGCTGGAAATGGTAGCCTGGGCTGG  300

seq1  CATTTGTGTTCTCTTAGTGTCTGTATGATATTTGCCCAGGATCTTCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTTCTCTTAGTGTCTGTATGATATTTGCCCAGGATCTTCTTGC  350

seq1  TTTCACAGTCTCTGGTGAGAAGTCTGGTGTAATTCTGATAGGCCTGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGTCTCTGGTGAGAAGTCTGGTGTAATTCTGATAGGCCTGCCTT  400

seq1  TATATGTTACTTGACCTTTTTCCCTTACTGCTTTTAATATTCTTTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTACTTGACCTTTTTCCCTTACTGCTTTTAATATTCTTTCTTTG  450

seq1  TTTAGTGCATTTGGTGTTTTGATTATTATGTGATGAGAGGAATTTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCATTTGGTGTTTTGATTATTATGTGATGAGAGGAATTTCTTTT  500

seq1  CTGGTCAAGTCTATTTGGAGTTCTGTAGGCTTCTTGTA  538
      ||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAAGTCTATTTGGAGTTCTGTAGGCTTCTTGTA  538

seq1: chr3_26967091_26968150
seq2: B6Ng01-058B03.g_81_1121 (reverse)

seq1  GACACTTAGTAACACCTAGAGATTGCTTCATCTCCCTCCGTTCATTGTGG  50
      ||||| ||||| |||||||||| ||| |||||| ||||   |||||||||
seq2  GACAC-TAGTACCACCTAGAGA-TGC-TCATCT-CCTC--GTCATTGTGG  44

seq1  TCTTCATAATTCTTCTTCACAGGAACGTGGCACCCCTTTGTATGCATTGG  100
      |||    || ||||||||||||| |||| ||||||| ||||||||||  |
seq2  TCT---CAAATCTTCTTCACAGG-ACGT-GCACCCC-TTGTATGCAT--G  86

seq1  AAGCTATTCGACTACAGTCCTATGCATCGGAGTTTAGTAGCT-CCTAATG  149
      |||||| ||||||||||| ||||||||||||| ||||||||| |||||||
seq2  AAGCTA-TCGACTACAGT-CTATGCATCGGAG-TTAGTAGCTCCCTAATG  133

seq1  CCTTACAATTACAAATGATGCTGGGACACATAACTTCACTCAACTATTAT  199
      |||||||| |||||| ||||||||||||||||||||||||||||||||| 
seq2  CCTTACAA-TACAAA-GATGCTGGGACACATAACTTCACTCAACTATTA-  180

seq1  TGTGCTTTGAGAAAGTCTTCTGAGTAGATACCAAAAATTAACATGCAGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGAGAAAGTCTTCTGAGTAGATACCAAAAATTAACATGCAGGT  230

seq1  GAATATACCTTGTGTTACGTCTGACCAACTTGCTTCCCAGTGGTTAATCA  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAATATACCTTGTGTTACGTCTGA-CAACTTGCTTCCCAGTGGTTAATCA  279

seq1  TCTCCACTGTCAACTTGACTGGATTTAGAGACACGTGGAAACACCTCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTGTCAACTTGACTGGATTTAGAGACACGTGGAAACACCTCTGA  329

seq1  GTGTGTCTACAGAGTGTATCCAGGAAGATTTGGC-AAAATATGGAGCATG  398
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGTGTCTACAGAGTGTATCCAGGAAGATTTGGCAAAAATATGGAGCATG  379

seq1  ACCCTGAATATGAACAAAACAATCACATAAGCTGGGGTACTGATATTAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAATATGAACAAAACAATCACATAAGCTGGGGTACTGATATTAAC  429

seq1  AAGCAAAAAAAAAAGGGAAGCTGAATATCAATTCAATATTTATTTCTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAAAAAAGGGAAGCTGAATATCAATTCAATATTTATTTCTCTG  479

seq1  CTTCCTGACATAACGTGACCAGTTATTTTATGCTCCAACAGCTATGCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGACATAACGTGACCAGTTATTTTATGCTCCAACAGCTATGCCTC  529

seq1  TGTACCATAATGATGGACTGTGTCTCTTTAAACTATAAGACAAAACAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCATAATGATGGACTGTGTCTCTTTAAACTATAAGACAAAACAAAA  579

seq1  CCTTCCTTCCTTCCCTCCTTCTGTCTGTCTGCCTGTCTGTCCATCCTCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCCTCCTTCTGTCTGTCTGCCTGTCTGTCCATCCTCCA  629

seq1  TTTTAGTCAGGTATCTTCTCACAGCAACAAGAAGAGAAAGTAACACAGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCAGGTATCTTCTCACAGCAACAAGAAGAGAAAGTAACACAGTG  679

seq1  GAACTCTTATGAACTCCTACCAGAAACTTAGGAGGAAATGTCTGTCCTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTATGAACTCCTACCAGAAACTTAGGAGGAAATGTCTGTCCTCA  729

seq1  CAGCATCACTGACAGATCAGTACCTGCTTCCTAGCTTCAGCATCTGATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCACTGACAGATCAGTACCTGCTTCCTAGCTTCAGCATCTGATGA  779

seq1  AAACTTGTAAGTGAATTTGAACATTTTTCTTATGCTGACATTATTTTGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTAAGTGAATTTGAACATTTTTCTTATGCTGACATTATTTTGTA  829

seq1  CTTTGTGCTTGTTGGTAGTCTTCACCCACATACCTTTGACTATGAAGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCTTGTTGGTAGTCTTCACCCACATACCTTTGACTATGAAGTCT  879

seq1  TGGTCTTTGTCTCTCTATCTCTACAAGCCCTGTAGACATCTATTTAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTGTCTCTCTATCTCTACAAGCCCTGTAGACATCTATTTAGAAA  929

seq1  ATATGTCTGTCACAGTAGTTCATCCTAGTTGGTCACTTGCATTTTCATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTGTCACAGTAGTTCATCCTAGTTGGTCACTTGCATTTTCATTC  979

seq1  AGTCAGGAAAGACTTGAAAAAAAATATTTTTGTGTGCTTACATTTCTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGAAAGACTTGAAAAAAAATATTTTTGTGTGCTTACATTTCTCAG  1029

seq1  TCTGTGCTTTTG  1060
      ||||||||||||
seq2  TCTGTGCTTTTG  1041