BAC Information

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BAC

Clone NameB6Ng01-058D22
Chromosome3 (Build37)
Map Location 96,528,383 - 96,634,644
singlet/doubletdoublet
Overlap genePolr3c, Zfp364, Cd160, Pdzk1
Upstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3
Downstream geneGpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058D22.bB6Ng01-058D22.g
ACCDH879876DH879877
length871833
definitionDH879876|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D22, 5' end.DH879877|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,528,383 - 96,529,116)(96,633,810 - 96,634,644)
sequence
gaattctttgctgtgatgttcctattatgtctgatttttttttttttttt
tttttttttggtttttcgagacagggtttctctgtgtagccctggctgtc
ctggaactcactctgtagaccaagctggcctcgaactcagaaatccgcct
gcttctacctcccaagtgctgggattaaaggcctgtgtgccaccacgccc
ggcttattttgtctgatctttatctttcttctagttttctgttttgaatg
tggttctcctggagcccagggaagccttacacttgttgtgtatctgaggg
tgaccttgaacttcccagcccctcctttcaagtcgtgggatcataaacat
aaacacacccagttctatacagtgttggagatcaaagcaggacattttag
ctgctatgcagtgtgaatggtctttgctactttgtgggttcttctttttc
ccacccttgatactcccttcccactcccatccccacccgggtttcaccct
ctaacacttcataagagagaaacaaggaggaattaggaaaatccctgaat
ttaatttctttcgtttcttctttgaccaacactactagtaaatcacaact
tccctaaatgaccaccaaccccccgactccacatattggggctggcattt
atacacactctgaaaagttcccagaatcccagacactgcacaattacagg
aactatctatagctggcagaaccatgcctctgctagaacatgaggcaaat
catagacagtctgaagcagcccatatctgcatacttgggattaaaatgaa
aaatattcctataatatttttgtatttttgttgtttgtttttttgagaca
gggtttctctgtgcagccctg
gaattcaaggtatttcaggttcacacaagatagagattgagagattctcc
caaagggagactagaagacttgaatttgcacccagtcaacccagcaatcc
gtggctttcctcgtggctaacactgtcttgggaaacagaagaggcaccgg
tagaagttagattcggctgtatgttttaagggctggctgcctttggaaga
gtcttcccttataccctaaatgcttggatagtaaagtctcagaagaaaat
tccccgtggcctgggacttctgtggtctctgtcccttggctgtgcatctc
catacagcacccccacctcttccaccccatcgtatatatacgacacccct
gggaagcgagcagcccaccaatgccttcatgaagtagagcctgcacatct
ccagtaaaaagaactgtgacacccctggaaggccatcctcacccccactt
aacctgtgctcctgccaccacagaggcctcaacccccccacagccacttg
ccagcaaaaagagaagggataagtggccccagcccaggcagcaggtcgca
gaccgctcttcttacctgtggcgaaggatccgctccgcactggaaattct
ccccgctgtgaacactactagtcttggaactcactggactttggacaaag
attgatttaaaagctgatgtatttaacagggacgtgtggtctgagttcaa
gtgacctctgtcctgctcccggccagctggcagggtcctaagcttgaaat
gctcaagaggcctcagtaaaatcaagccccgcccccaccccagcctacaa
tgggaagggtagtagagaaagtggggagggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96528383_96529116
seq2: B6Ng01-058D22.b_43_776

seq1  GAATTCTTTGCTGTGATGTTCCTATTATGTCTGATTTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTGTGATGTTCCTATTATGTCTGATTTTTTTTTTTTTTTT  50

seq1  TTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC  100

seq1  CTGGAACTCACTCTGTAGACCAAGCTGGCCTCGAACTCAGAAATCCGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTCTGTAGACCAAGCTGGCCTCGAACTCAGAAATCCGCCT  150

seq1  GCTTCTACCTCCCAAGTGCTGGGATTAAAGGCCTGTGTGCCACCACGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACCTCCCAAGTGCTGGGATTAAAGGCCTGTGTGCCACCACGCCC  200

seq1  GGCTTATTTTGTCTGATCTTTATCTTTCTTCTAGTTTTCTGTTTTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTTTGTCTGATCTTTATCTTTCTTCTAGTTTTCTGTTTTGAATG  250

seq1  TGGTTCTCCTGGAGCCCAGGGAAGCCTTACACTTGTTGTGTATCTGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCCTGGAGCCCAGGGAAGCCTTACACTTGTTGTGTATCTGAGGG  300

seq1  TGACCTTGAACTTCCCAGCCCCTCCTTTCAAGTCGTGGGATCATAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGAACTTCCCAGCCCCTCCTTTCAAGTCGTGGGATCATAAACAT  350

seq1  AAACACACCCAGTTCTATACAGTGTTGGAGATCAAAGCAGGACATTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACCCAGTTCTATACAGTGTTGGAGATCAAAGCAGGACATTTTAG  400

seq1  CTGCTATGCAGTGTGAATGGTCTTTGCTACTTTGTGGGTTCTTCTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATGCAGTGTGAATGGTCTTTGCTACTTTGTGGGTTCTTCTTTTTC  450

seq1  CCACCCTTGATACTCCCTTCCCACTCCCATCCCCACCCGGGTTTCACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTGATACTCCCTTCCCACTCCCATCCCCACCCGGGTTTCACCCT  500

seq1  CTAACACTTCATAAGAGAGAAACAAGGAGGAATTAGGAAAATCCCTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTTCATAAGAGAGAAACAAGGAGGAATTAGGAAAATCCCTGAAT  550

seq1  TTAATTTCTTTCGTTTCTTCTTTGACCAACACTACTAGTAAATCACAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTTCGTTTCTTCTTTGACCAACACTACTAGTAAATCACAACT  600

seq1  TCCCTAAATGACCACCAACCCCCCGACTCCACATATTGGGGCTGGCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAATGACCACCAACCCCCCGACTCCACATATTGGGGCTGGCATTT  650

seq1  ATACACACTCTGAAAAGTTCCCAGAATCCCAGACACTGCACAATCACAGG  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATACACACTCTGAAAAGTTCCCAGAATCCCAGACACTGCACAATTACAGG  700

seq1  AACTATCTATAGCTGGCAGAACCATGCCTCTGCT  734
      ||||||||||||||||||||||||||||||||||
seq2  AACTATCTATAGCTGGCAGAACCATGCCTCTGCT  734

seq1: chr3_96633810_96634644
seq2: B6Ng01-058D22.g_69_901 (reverse)

seq1  ACCCCCTCCCCACCTTTCTCTACTACCCTTCCCATTGTTAGGCTGGGGTG  50
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  ACCCCCTCCCCA-CTTTCTCTACTACCCTTCCCATTG-TAGGCTGGGGTG  48

seq1  GGGGCGGGGCTTGATTTTACTGAGGCCTCTTGAGCATTTCAAGCTTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGGCTTGATTTTACTGAGGCCTCTTGAGCATTTCAAGCTTAGGA  98

seq1  CCCTGCCAGCTGGCCGGGAGCAGGACAGAGGTCACTTGAACTCAGACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCAGCTGGCCGGGAGCAGGACAGAGGTCACTTGAACTCAGACCAC  148

seq1  ACGTCCCTGTTAAATACATCAGCTTTTAAATCAATCTTTGTCCAAAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCTGTTAAATACATCAGCTTTTAAATCAATCTTTGTCCAAAGTCC  198

seq1  AGTGAGTTCCAAGACTAGTAGTGTTCACAGCGGGGAGAATTTCCAGTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCAAGACTAGTAGTGTTCACAGCGGGGAGAATTTCCAGTGCG  248

seq1  GAGCGGATCCTTCGCCACAGGTAAGAAGAGCGGTCTGCGACCTGCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGATCCTTCGCCACAGGTAAGAAGAGCGGTCTGCGACCTGCTGCCT  298

seq1  GGGCTGGGGCCACTTATCCCTTCTCTTTTTGCTGGCAAGTGGCTGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGCCACTTATCCCTTCTCTTTTTGCTGGCAAGTGGCTGTGGGG  348

seq1  GGGTTGAGGCCTCTGTGGTGGCAGGAGCACAGGTTAAGTGGGGGTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGGCCTCTGTGGTGGCAGGAGCACAGGTTAAGTGGGGGTGAGGA  398

seq1  TGGCCTTCCAGGGGTGTCACAGTTCTTTTTACTGGAGATGTGCAGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCCAGGGGTGTCACAGTTCTTTTTACTGGAGATGTGCAGGCTCT  448

seq1  ACTTCATGAAGGCATTGGTGGGCTGCTCGCTTCCCAGGGGTGTCGTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGAAGGCATTGGTGGGCTGCTCGCTTCCCAGGGGTGTCGTATAT  498

seq1  ATACGATGGGGTGGAAGAGGTGGGGGTGCTGTATGGAGATGCACAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGATGGGGTGGAAGAGGTGGGGGTGCTGTATGGAGATGCACAGCCAA  548

seq1  GGGACAGAGACCACAGAAGTCCCAGGCCACGGGGAATTTTCTTCTGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAGACCACAGAAGTCCCAGGCCACGGGGAATTTTCTTCTGAGAC  598

seq1  TTTACTATCCAAGCATTTAGGGTATAAGGGAAGACTCTTCCAAAGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATCCAAGCATTTAGGGTATAAGGGAAGACTCTTCCAAAGGCAGC  648

seq1  CAGCCCTTAAAACATACAGCCGAATCTAACTTCTACCGGTGCCTCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTAAAACATACAGCCGAATCTAACTTCTACCGGTGCCTCTTCTG  698

seq1  TTTCCCAAGACAGTGTTAGCCACGAGGAAAGCCACGGATTGCTGGGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGACAGTGTTAGCCACGAGGAAAGCCACGGATTGCTGGGTTGA  748

seq1  CTGGGTGCAAATTCAAGTCTTCTAGTCTCCCTTTGGGAGAATCTCTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGCAAATTCAAGTCTTCTAGTCTCCCTTTGGGAGAATCTCTCAAT  798

seq1  CTCTATCTTGTGTGAACCTGAAATGCCTTGAATTC  835
      |||||||||||||||||||||||| ||||||||||
seq2  CTCTATCTTGTGTGAACCTGAAATACCTTGAATTC  833