BAC Information

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BAC

Clone NameB6Ng01-058I06
Chromosome3 (Build37)Y (Build37)
Map Location 120,816,271 - 120,816,9661,870,376 - 1,870,432
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058I06.bB6Ng01-058I06.g
ACCDH880071DH880072
length976500
definitionDH880071|Mus musculus domesticus DNA, BAC clone: B6Ng01-058I06, 5' end.DH880072|Mus musculus domesticus DNA, BAC clone: B6Ng01-058I06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,816,271 - 120,816,966)(1,870,376 - 1,870,432)
sequence
gaattctctactgacagtcaaggtcaactcatcaatttttgcttcacaat
tttttttttgtgacaacacaaatctgaaaattgtcatatctctaggtaga
ttaatttttaaacatcattatcacatgctacttccttatatcttttacca
gagcatttttgtgtccttacattaaaaaatgtttttttcttacattaaaa
atttaaagcctgcttcataagaggagctgttagttggtaccatagctggc
tgggtcataggccctaggggagaatctattattattctgctgagtgggta
gagtaataaactgcaccctaagttcttgtttctatatgcatctctcaacc
ctcatcagagaagtttccttttggcagtaggttgtgattacagagaccct
caactggacagcatgtagagagtaatagaataaatgagacatctttatca
cacccaccatacaggtcagggatcatcatggaagaaaggccagaagcata
agagccagagggagtgggcatctgcagcaaaacagcatttgtccaacaca
agcagttgcacacgaatttataatgtcaaattgcaagcataagacctgaa
caagatcaaaccagccaaaatcccagtatggacaggagaggggcgcatta
agtgccatctctatctgaggagctatgggcagttgacacacgggagagga
aaagtcaattttctctccctcaggacgaggaccctgagaaatgactcaag
ctcccgtagatggtctcacacccgtgcaatggcaggccacgctaaatagt
cccattggctattaaattataaaaagggaaagagcgcgtgaagtttggag
ggaggttgtgggcagtgaataggagaggaagagggattggtcctaattca
atacatatttgaacatatgacattaagtaaatattaatgaaagagaccct
ccaatattctttttttaaaatcattt
gaattctttgtttagctctgtacctcatttttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatatattggatattagtccac
tatcagatttaggattggtaaaaattctttcccaatctgttggtggcctt
ttgtcttattgacagtatctttagccctatagaagctttgcaattttatg
aagttcctttgtcgactcttgatcttacagcacaggccattgctgttctg
tttaggaaccaaacacagacactattgcatacaccagcaagattttgctg
aagggaccctgatatagctgtctcttgtgaagctttgccagtacctggca
aatacagaagtggatgctcatagtcatctataggatggagcgcaaggtcc
ccagtggaggagctagagaaagtactcaaggagctgaaggggtctgcaac
cctataggtggaacaacaatatgaactaaccagtacccccagagctcgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120816271_120816966
seq2: B6Ng01-058I06.b_46_741 (reverse)

seq1  CTCCCGTGTGTCAACTGCCCATAGCTCCTCAGATAGAGATGGCACTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGTGTGTCAACTGCCCATAGCTCCTCAGATAGAGATGGCACTTAAT  50

seq1  GCGCCCCTCTCCTGTCCATACTGGGATTTTGGCTGGTTTGATCTTGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCCTCTCCTGTCCATACTGGGATTTTGGCTGGTTTGATCTTGTTCA  100

seq1  GGTCTTATGCTTGCAATTTGACATTATAAATTCGTGTGCAACTGCTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATGCTTGCAATTTGACATTATAAATTCGTGTGCAACTGCTTGTG  150

seq1  TTGGACAAATGCTGTTTTGCTGCAGATGCCCACTCCCTCTGGCTCTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAAATGCTGTTTTGCTGCAGATGCCCACTCCCTCTGGCTCTTATG  200

seq1  CTTCTGGCCTTTCTTCCATGATGATCCCTGACCTGTATGGTGGGTGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCCTTTCTTCCATGATGATCCCTGACCTGTATGGTGGGTGTGAT  250

seq1  AAAGATGTCTCATTTATTCTATTACTCTCTACATGCTGTCCAGTTGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCTCATTTATTCTATTACTCTCTACATGCTGTCCAGTTGAGGG  300

seq1  TCTCTGTAATCACAACCTACTGCCAAAAGGAAACTTCTCTGATGAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAATCACAACCTACTGCCAAAAGGAAACTTCTCTGATGAGGGTT  350

seq1  GAGAGATGCATATAGAAACAAGAACTTAGGGTGCAGTTTATTACTCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGCATATAGAAACAAGAACTTAGGGTGCAGTTTATTACTCTACC  400

seq1  CACTCAGCAGAATAATAATAGATTCTCCCCTAGGGCCTATGACCCAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCAGAATAATAATAGATTCTCCCCTAGGGCCTATGACCCAGCCA  450

seq1  GCTATGGTACCAACTAACAGCTCCTCTTATGAAGCAGGCTTTAAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGTACCAACTAACAGCTCCTCTTATGAAGCAGGCTTTAAATTTTT  500

seq1  AATGTAAGAAAAAAACATTTTTTAATGTAAGGACACAAAAATGCTCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGAAAAAAACATTTTTTAATGTAAGGACACAAAAATGCTCTGGT  550

seq1  AAAAGATATAAGGAAGTAGCATGTGATAATGATGTTTAAAAATTAATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATAAGGAAGTAGCATGTGATAATGATGTTTAAAAATTAATCTA  600

seq1  CCTAGAGATATGACAATTTTCAGATTTGTGTTGTCACAAAAAAAAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGATATGACAATTTTCAGATTTGTGTTGTCACAAAAAAAAAATTG  650

seq1  TGAAGCAAAAATTGATGAGTTGACCTTGACTGTCAGTAGAGAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAAAATTGATGAGTTGACCTTGACTGTCAGTAGAGAATTC  696

seq1: chrY_1870376_1870432
seq2: B6Ng01-058I06.g_510_567

seq1  TCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCATTA-CCCCTG  49
      |||||||||||||||||||||||||| ||||||||||||| || |||| |
seq2  TCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAG  50

seq1  AGCTCTTG  57
      ||||| ||
seq2  AGCTCGTG  58