BAC Information

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BAC

Clone NameB6Ng01-058J04
Chromosome3 (Build37)
Map Location 17,071,916 - 17,175,102
singlet/doubletdoublet
Overlap geneEG383936, LOC622737
Upstream geneYthdf3, LOC100040034, LOC100040059
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058J04.bB6Ng01-058J04.g
ACCDH880113DH880114
length1,1021,100
definitionDH880113|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J04, 5' end.DH880114|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,173,979 - 17,175,102)(17,071,916 - 17,073,034)
sequence
gaattcttggggtactggttagtttactcatcacacacttccctttaatc
cagggccactgctaccatgaaatcagacaaactaactgcagatcttcact
cctccttttcctttttagttctaaagttaccattctcatccccatctctg
tagtagaacacttgatagtttctctttccttccttcagtgagactgggtc
taaaagattataaagagagatggaaatttgctatcatcctactaggtttc
atggcagaaacggcctctgcaatagcaaggggtggctgttggagttggga
gctgtttctctagcctgcttttcttgtgtattctcaaggaatgaaaatat
atcttataatatgagtaaaacaatcaattactaaaaatctccaaaactga
tagaactgtcaaaaactgctagattctgtatgtggttcagattttttctt
ttgaaatgtcatttctacatacttaaaaagattattaagaaatacaattt
gagaaaaatatcgtttaaatgttatcaatattttcaaaacacacaaataa
attcaatgacaaactatcacacaataaatgaaacataaattaataactaa
attaacagaggagtgtactgggaataatgtatgcaacctggagtaagaaa
caaaataaagataaattttcccaattacatctattgatcaattttcagta
aacttttattttgagtaaaattttaaccacaatggaacaaaatgtagcaa
accaagttttaaattaatatataaacacaaacagcaaaatttattatctc
atttgataatagatgtctaaatgaagtaccttgctttacaacttaaaaag
agttatagcaagaacaaatatagaatgattacattgatacaaagaggatc
tctgacacttaaaacaaaaacaaaagcaaaaatcaaatgagacaaatgat
ttgaaactctgttaatcccaaggtcaaatttgtgttgcaattcagtggaa
atgggataattattctcagaaatgctgtattaacagtctaatctgactca
gtcatcactgtgcatttatgatctgtcagtctataacataaaggaaacat
tt
gaattcccaagtttttgctattccccaaagtaccataaatatacaaacat
gaaatataataaaacactatctcaattatcacattagtaattaatgtgag
gttcttaaatctttgtttagttataatttactgctaatcacataaaaata
gtgtttggtatgaaacctctcaccactaaacatatatcttcaacaattac
tatattcatagataatgaatttaaaattataattagaaaagaattagttg
caaaaataaattttactatagtactgagatgaaaaatagaggacaaaatt
ttaaagattagtaaaatgaaggaaattaatattttttagctagtaaccca
cctacatcttagctttctcattcagttttcttataatttatacacaggtt
cttgatatttatcattataaaacatttcattcttaattttgaaaataaca
aatcaacaatcacaaataatttaataacctatttctttacttcaaggcac
atgaatttaaacaatctatttctctgttgcgtagatagaaacgagaagca
agaactttcttaggcaaaagtcctagtcatgtctttgtcatgtggttgct
tatgtaattcttgtattctatagtagagttagaaaacatgagttttaacc
tttgagtcaaatccttccttgatccccaagtgaatgaattagaaaactat
ttcttaattgcgtttatatatttgctgtgtgtcttgtatcatatcacctg
tgtggtgatcaggagacaaactgtgggagtcagttctgcctttttaccat
gttgatcccaggcattgaactctagcttaaatcactcttccatttagttt
tgctttgttttgtttttgaataagtgctagtccacttatggatatcatat
tctgtttatctgtttctctgatgaagaatattgatccttctcatctttta
gttgctgtgtatgtgatatatggatttttggataaaatttttaactgtga
actgcttttatatttcttgaagatatgcaaacttgagaatattgggtcat
aagtaatctttgatcaattttttattactccttattctgctcaatggccc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17173979_17175102
seq2: B6Ng01-058J04.b_44_1145 (reverse)

seq1  AAATGTTTTCCCTTTTATG-TATAGACTGACAGATCATTTAAAATGCAAC  49
      ||||||||   | |||||| ||||||||||||||||||   |||||| ||
seq2  AAATGTTT---CCTTTATGTTATAGACTGACAGATCAT---AAATGC-AC  43

seq1  AGTGATGAACTGAGGTCAGGATTAAGACTTGGTTAATACAGGCATTTCCT  99
      ||||||| ||||| |||| |||| |||||  ||||||||| |||||||  
seq2  AGTGATG-ACTGA-GTCA-GATT-AGACT--GTTAATACA-GCATTTC--  84

seq1  TGAGAATAATTATCCCATTTCCACTGAATTGCAACACAAATTTGACCTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAATTATCCCATTTCCACTGAATTGCAACACAAATTTGACCTTG  134

seq1  GGATTAACAGAGTTTTCATATCATTTGTCTCATTTTGATTTTTTGCTTTT  199
      |||||||||||| ||||| ||||||||||||| ||||| |||||||||||
seq2  GGATTAACAGAG-TTTCAAATCATTTGTCTCA-TTTGA-TTTTTGCTTTT  181

seq1  TGTTTTTTGTTTTAAGTGTCAGAGATCCTCTTTTGTATCAATGTAATCAT  249
         ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  --GTTTTTGTTTTAAGTGTCAGAGATCCTC-TTTGTATCAATGTAATCAT  228

seq1  TCTATATTTGTTCTTTGCTATAACTCTTTTTAAGTTGTAAAGCAAGGTAC  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTGTTC-TTGCTATAACTCTTTTTAAGTTGTAAAGCAAGGTAC  277

seq1  TTCATTTAGACATCTATTATCAAATGAGATAATAAATTTTGCTGTTTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGACATCTATTATCAAATGAGATAATAAATTTTGCTGTTTGTG  327

seq1  TTTATATATTAATTTAAAACTTGGTTTGCTACATTTTGTTCCATTGTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATTAATTTAAAACTTGGTTTGCTACATTTTGTTCCATTGTGGT  377

seq1  TAAAATTTTACTCAAAATAAAAGTTTACTGAAAATTGATCAATAGATGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTACTCAAAATAAAAGTTTACTGAAAATTGATCAATAGATGTA  427

seq1  ATTGGGAAAATTTATCTTTATTTTGTTTCTTACTCCAGGTTGCATACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAAATTTATCTTTATTTTGTTTCTTACTCCAGGTTGCATACATT  477

seq1  ATTCCCAGTACACTCCTCTGTTAATTTAGTTATTAATTTATGTTTCATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGTACACTCCTCTGTTAATTTAGTTATTAATTTATGTTTCATTT  527

seq1  ATTGTGTGATAGTTTGTCATTGAATTTATTTGTGTGTTTTGAAAATATTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGATAGTTTGTCATTGAATTTATTTGTGTGTTTTGAAAATATTG  577

seq1  ATAACATTTAAACGATATTTTTCTCAAATTGTATTTCTTAATAATCTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTAAACGATATTTTTCTCAAATTGTATTTCTTAATAATCTTTT  627

seq1  TAAGTATGTAGAAATGACATTTCAAAAGAAAAAATCTGAACCACATACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATGTAGAAATGACATTTCAAAAGAAAAAATCTGAACCACATACAG  677

seq1  AATCTAGCAGTTTTTGACAGTTCTATCAGTTTTGGAGATTTTTAGTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCAGTTTTTGACAGTTCTATCAGTTTTGGAGATTTTTAGTAATT  727

seq1  GATTGTTTTACTCATATTATAAGATATATTTTCATTCCTTGAGAATACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTTACTCATATTATAAGATATATTTTCATTCCTTGAGAATACAC  777

seq1  AAGAAAAGCAGGCTAGAGAAACAGCTCCCAACTCCAACAGCCACCCCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCAGGCTAGAGAAACAGCTCCCAACTCCAACAGCCACCCCTTG  827

seq1  CTATTGCAGAGGCCGTTTCTGCCATGAAACCTAGTAGGATGATAGCAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAGAGGCCGTTTCTGCCATGAAACCTAGTAGGATGATAGCAAAT  877

seq1  TTCCATCTCTCTTTATAATCTTTTAGACCCAGTCTCACTGAAGGAAGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTCTCTTTATAATCTTTTAGACCCAGTCTCACTGAAGGAAGGAA  927

seq1  AGAGAAACTATCAAGTGTTCTACTACAGAGATGGGGATGAGAATGGTAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTATCAAGTGTTCTACTACAGAGATGGGGATGAGAATGGTAAC  977

seq1  TTTAGAACTAAAAAGGAAAAGGAGGAGTGAAGATCTGCAGTTAGTTTGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACTAAAAAGGAAAAGGAGGAGTGAAGATCTGCAGTTAGTTTGTC  1027

seq1  TGATTTCATGGTAGCAGTGGCCCTGGATTAAAGGGAAGTGTGTGATGAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATGGTAGCAGTGGCCCTGGATTAAAGGGAAGTGTGTGATGAGT  1077

seq1  AAACTAACCAGTACCCCAAGAATTC  1124
      |||||||||||||||||||||||||
seq2  AAACTAACCAGTACCCCAAGAATTC  1102

seq1: chr3_17071916_17073034
seq2: B6Ng01-058J04.g_67_1166

seq1  GAATTCCCAAGTTTTTGCTATTCCCCAAAGTACCATAAATATACAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGTTTTTGCTATTCCCCAAAGTACCATAAATATACAAACAT  50

seq1  GAAATATAATAAAACACTATCTCAATTATCACATTAGTAATTAATGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAATAAAACACTATCTCAATTATCACATTAGTAATTAATGTGAG  100

seq1  GTTCTTAAATCTTTGTTTAGTTATAATTTACTGCTAATCACATAAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAAATCTTTGTTTAGTTATAATTTACTGCTAATCACATAAAAATA  150

seq1  GTGTTTGGTATGAAACCTCTCACCACTAAACATATATCTTCAACAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGTATGAAACCTCTCACCACTAAACATATATCTTCAACAATTAC  200

seq1  TATATTCATAGATAATGAATTTAAAATTATAATTAGAAAAGAATTAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATAGATAATGAATTTAAAATTATAATTAGAAAAGAATTAGTTG  250

seq1  CAAAAATAAATTTTACTATAGTACTGAGATGAAAAATAGAGGACAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAATTTTACTATAGTACTGAGATGAAAAATAGAGGACAAAATT  300

seq1  TTAAAGATTAGTAAAATGAAGGAAATTAATATTTTTTAGCTAGTAACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTAGTAAAATGAAGGAAATTAATATTTTTTAGCTAGTAACCCA  350

seq1  CCTACATCTTAGCTTTCTCATTCAGTTTTCTTATAATTTATACACAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCTTAGCTTTCTCATTCAGTTTTCTTATAATTTATACACAGGTT  400

seq1  CTTGATATTTATCATTATAAAACATTTCATTCTTAATTTTGAAAATAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATTTATCATTATAAAACATTTCATTCTTAATTTTGAAAATAACA  450

seq1  AATCAACAATCACAAATAATTTAATAACCTATTTCTTTACTTCAAGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACAATCACAAATAATTTAATAACCTATTTCTTTACTTCAAGGCAC  500

seq1  ATGAATTTAAACAATCTATTTCTCTGTTGCGTAGATAGAAACGAGAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTAAACAATCTATTTCTCTGTTGCGTAGATAGAAACGAGAAGCA  550

seq1  AGAACTTTCTTAGGCAAAAGTCCTAGTCATGTCTTTGTCATGTGGTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTCTTAGGCAAAAGTCCTAGTCATGTCTTTGTCATGTGGTTGCT  600

seq1  TATGTAATTCTTGTATTCTATAGTAGAGTTAGAAAACATGAGTTTTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATTCTTGTATTCTATAGTAGAGTTAGAAAACATGAGTTTTAACC  650

seq1  TTTGAGTCAAATCCTTCCTTGATCCCCAAGTGAATGAATTAGAAAACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCAAATCCTTCCTTGATCCCCAAGTGAATGAATTAGAAAACTAT  700

seq1  TTCTTAATTGCGTTTATATATTTGCTGTGTGTCTTGTATCATATCACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATTGCGTTTATATATTTGCTGTGTGTCTTGTATCATATCACCTG  750

seq1  TGTGGTGATCAGGAGACAAACTGTGGGAGTCAGTTCTGCCTTTTTACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGATCAGGAGACAAACTGTGGGAGTCAGTTCTGCCTTTTTACCAT  800

seq1  GTTGATCCCAGGCATTGAACTCTAGCTTAAATCACTCTTCCATTTAGGTT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTGATCCCAGGCATTGAACTCTAGCTTAAATCACTCTTCCATTTA-GTT  849

seq1  TTGCTTTGTTTTGTTTTTGAATAAGTGCTAGTCCACTTATGGATATCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTTTTGTTTTTGAATAAGTGCTAGTCCACTTATGGATATCATA  899

seq1  TTCTGTTTATCTGTTTCTCTGATGAAGAATATTTGATCCTTCTCATCTTT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTGTTTATCTGTTTCTCTGATGAAGAATA-TTGATCCTTCTCATCTTT  948

seq1  TAGTTGCTGTGTATGTTGATATATGGATATTTGGATATAATTTTTAACTG  1000
      ||||||||||||||| |||||||||||| |||||||| ||||||||||||
seq2  TAGTTGCTGTGTATG-TGATATATGGATTTTTGGATAAAATTTTTAACTG  997

seq1  TGAAACTGCTTTTATATTTCTTG-AGATAATGCATACATGTAGAATTATT  1049
      || |||||||||||||||||||| |||| ||||| || || |||| ||||
seq2  TG-AACTGCTTTTATATTTCTTGAAGAT-ATGCAAACTTG-AGAA-TATT  1043

seq1  GGGTCATATAGTAATCCTTTTTTAATCATATTTTTTTAATTACTCACTTT  1099
      |||||||| |||||||    ||| |||| |||||||  ||||||| ||  
seq2  GGGTCATA-AGTAATC----TTTGATCA-ATTTTTT--ATTACTC-CT--  1082

seq1  ATATTCTGCTCAATGTGCCC  1119
       |||||||||||||| ||||
seq2  -TATTCTGCTCAATG-GCCC  1100