BAC Information

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BAC

Clone NameB6Ng01-058L18
Chromosome3 (Build37)
Map Location 17,643,704 - 17,750,574
singlet/doubletdoublet
Overlap geneENSMUSG00000074674, LOC100040120
Upstream geneLOC100040059, EG383936, LOC622737
Downstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058L18.bB6Ng01-058L18.g
ACCDH880231DH880232
length1,1571,074
definitionDH880231|Mus musculus domesticus DNA, BAC clone: B6Ng01-058L18, 5' end.DH880232|Mus musculus domesticus DNA, BAC clone: B6Ng01-058L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,643,704 - 17,644,879)(17,749,469 - 17,750,574)
sequence
gaattcctatattgttcccatctgctaaaagaaaaaggcttccagatgat
ggtcgagtaaggcacttatctatgagtgtagcagaatatgtttaggagtc
attttattgctacttttttttaagacctatagtattttattttcctctag
gtctctgggttatcttgcctctggttcttgatcacccatgcagtgttgga
tatggtttacatggactggagtaaaacttatgtcagatcagactttacat
ggttattcccacaagttttgtgccaccattgcactagcataattttcagg
gaggacagcattgtagatgcaaattttgtggttggataacctttgctcca
tttcccaccaaacaaatctgtctactttgccagaggccttctaggacaca
aggtaaggttcctcccccaagcccttagcaacttccccaaaaggacaccc
aacagaggtaaactacacggtacaccctattgtccatttcctatcccaca
actctgcctgctttcctggaaccctgctggcacaaggaacaccaggtatg
acaaacactcacacacacactgttcgtgcctgtcaactcctcttaaagca
cactcagcaggaataaataatatccataccctgaactccatcttctgacc
cacaattgtgactgtttccctggaagccacagatcccaggtactccatgt
catgctggtactagggattcgaaaaccttagaattcacacaggccacaaa
aatcccagcagagacaccctactgtacctaaagagatactgctcaccaga
actccagaacattgaagtcagaagacaaagaagaaataagaaccaagagg
aaagtccaagaaaacacatccaacaataataaaataataaattagcacct
aacctattaaatcacaaaacccagatggctagaggcaaacctaaaaacaa
aattatcaagttagtgcatatgctaccacagagcccagctcttctagtat
agcaagtgcagagtatcctatcacatctgaagcaccaaaaagacctaaaa
ttcatctcatgaggccatagaggcctgtagaagggaatggagtagtccct
tagaaattagaaaatcaatcaacatgtgaagaaatgaataactgttggag
actgaaa
gaattcagagatggtcacaaggggaattaattgaaaagagtttaaattta
ttagggcataggaaaaatgtccgaagacatggtgataggcagacaagagg
atggatagctgcttgacatggtgataggcagacaagacgatggatagctg
cttgaggctctttggcacctgggtttttaataagtccagtagaatttggt
gtcattattgtggtgtggggatgaagttccctggaacttgagtttagatc
tttccttaattacctctacaagtttaacaataaggatcaaacaagtactg
ttatactggtaggtagaaatctgcttaatagtaatgctaataatatgcta
attagtatggtacttaacattcaaaatggcttccaagatttcctcttttc
agggagtaagaaacatgaccccacccaggagttgcatttgttgtactaat
gctaattgaatggagatatagttttctaacaggaacaagccattgtgcct
cctatagttgttccttaacttccttccttgtccctcaacaaggttaaagg
tcattaaactgaaattgcactggtcagatgggcttagctcaatgtcctgg
tatattacttttaagacaaatgaagtatagataaatacttaggcacttct
agcttccttttttttctattttttttaattttaacatactttaaagctac
aaatctcaaagatttgcaatatagaaagaaatgttagttatgaaggggaa
aacatgtcagactcctctgtattcaaacccaggtcgacttcatatgaatg
tgcacacttctgtttgttcaaagtcctggctcggtttggttttcaaagtt
ggaatacaattcattttcaagggttgttgttaggatttaaaaaaatcaag
agtatcctttagacacaggaagataaaaccagtgcatgacatattatata
tacactatatttgctagtagtgttgtgatttagaagagtctaatgcagaa
agaccttgtattaatatagatcgaataccttacaatcagcactcacgaat
gactacttctggcttggggtcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17643704_17644879
seq2: B6Ng01-058L18.b_47_1203

seq1  GAATTCCTATATTGTTCCCATCTGCTAAAAGAAAAAGGCTTCCAGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATATTGTTCCCATCTGCTAAAAGAAAAAGGCTTCCAGATGAT  50

seq1  GGTCGAGTAAGGCACTTATCTATGAGTGTAGCAGAATATGTTTAGGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGAGTAAGGCACTTATCTATGAGTGTAGCAGAATATGTTTAGGAGTC  100

seq1  ATTTTATTGCTACTTTTTTTTAAGACCTATAGTATTTTATTTTCCTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGCTACTTTTTTTTAAGACCTATAGTATTTTATTTTCCTCTAG  150

seq1  GTCTCTGGGTTATCTTGCCTCTGGTTCTTGATCACCCATGCAGTGTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGTTATCTTGCCTCTGGTTCTTGATCACCCATGCAGTGTTGGA  200

seq1  TATGGTTTACATGGACTGGAGTAAAACTTATGTCAGATCAGACTTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTACATGGACTGGAGTAAAACTTATGTCAGATCAGACTTTACAT  250

seq1  GGTTATTCCCACAAGTTTTGTGCCACCATTGCACTAGCATAATTTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCCCACAAGTTTTGTGCCACCATTGCACTAGCATAATTTTCAGG  300

seq1  GAGGACAGCATTGTAGATGCAAATTTTGTGGTTGGATAACCTTTGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGCATTGTAGATGCAAATTTTGTGGTTGGATAACCTTTGCTCCA  350

seq1  TTTCCCACCAAACAAATCTGTCTACTTTGCCAGAGGCCTTCTAGGACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACCAAACAAATCTGTCTACTTTGCCAGAGGCCTTCTAGGACACA  400

seq1  AGGTAAGGTTCCTCCCCCAAGCCCTTAGCAACTTCCCCAAAAGGACACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGTTCCTCCCCCAAGCCCTTAGCAACTTCCCCAAAAGGACACCC  450

seq1  AACAGAGGTAAACTACACGGTACACCCTATTGTCCATTTCCTATCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGTAAACTACACGGTACACCCTATTGTCCATTTCCTATCCCACA  500

seq1  ACTCTGCCTGCTTTCCTGGAACCCTGCTGGCACAAGGAACACCAGGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCTGCTTTCCTGGAACCCTGCTGGCACAAGGAACACCAGGTATG  550

seq1  ACAAACACTCACACACACACTGTTCGTGCCTGTCAACTCCTCTTAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACTCACACACACACTGTTCGTGCCTGTCAACTCCTCTTAAAGCA  600

seq1  CACTCAGCAGGAATAAATAATATCCATACCCTGAACTCCATCTTCTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCAGGAATAAATAATATCCATACCCTGAACTCCATCTTCTGACC  650

seq1  CACAATTGTGACTGTTTCCCTGGAAGCCACAGATCCCAGGTACTCCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTGTGACTGTTTCCCTGGAAGCCACAGATCCCAGGTACTCCATGT  700

seq1  CATGCTGGTACTAGGGATTCGAAAACCTTAGAATTCACACAGGCCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGTACTAGGGATTCGAAAACCTTAGAATTCACACAGGCCACAAA  750

seq1  AATCCCAGCAGAGACACCCTACTGTACCTAAAGAGATACTGCTCACCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCAGAGACACCCTACTGTACCTAAAGAGATACTGCTCACCAGA  800

seq1  ACTCCAGAACATTGAAGTCAGAAGACAAAGAAGAAATAAGAACCAAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGAACATTGAAGTCAGAAGACAAAGAAGAAATAAGAACCAAGAGG  850

seq1  AAAGTCCAAGAAAAACACATCCAACAATAATAAAATAATAAATTAGCACC  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAAG-AAAACACATCCAACAATAATAAAATAATAAATTAGCACC  899

seq1  TAAACCTATTAAAATCACAAAACCCAGATGGCTAGAGGCAAACCTAAAAA  950
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  T-AACCTATT-AAATCACAAAACCCAGATGGCTAGAGGCAAACCTAAAAA  947

seq1  CAAAATTATCAAGTTAGTGCAATATGCTACCAACAGAGCCCAGCTCTCCT  1000
      |||||||||||||||||||| |||||||||| ||||||||||||||| ||
seq2  CAAAATTATCAAGTTAGTGC-ATATGCTACC-ACAGAGCCCAGCTCTTCT  995

seq1  AGTATAGCAAGTGCAGAGTATCCTATCACATCTGAAGCACCAAAAAAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTATAGCAAGTGCAGAGTATCCTATCACATCTGAAGCACC-AAAAAGAC  1044

seq1  CTAAAATTCAATCTCATGAAGCCAATAGAGGCCTGTAGAGAGGAAATGAG  1100
      ||||||||| ||||||||| ||| |||||||||||||||  ||||  |||
seq2  CTAAAATTC-ATCTCATGAGGCC-ATAGAGGCCTGTAGAAGGGAATGGAG  1092

seq1  TAAGTCCCTTAAAGAAATATAAGAAAATACAATCAAACATGTGAAGGAAA  1150
      | ||||||||  ||||  || ||||||| ||||| |||||||||| ||||
seq2  T-AGTCCCTT--AGAA--ATTAGAAAAT-CAATC-AACATGTGAA-GAAA  1134

seq1  TGAATAAAACTGTTGAAGACCTGAAA  1176
      |||||  |||||||| ||| ||||||
seq2  TGAAT--AACTGTTGGAGA-CTGAAA  1157

seq1: chr3_17749469_17750574
seq2: B6Ng01-058L18.g_66_1139 (reverse)

seq1  GAGGACCCCACAGCCATGAAAGTAGTTCATGTCTGTAGATGCTGAATTGT  50
      |||||||||| |||||   |||||| |||| || ||   ||||| |||||
seq2  GAGGACCCCA-AGCCA--GAAGTAG-TCAT-TC-GTGAGTGCTG-ATTGT  43

seq1  AAAAGTTATCTGATCTAATATTATTTACAGGGTACTTTCTGCATTTTAGA  100
        ||| |||  ||||| ||||||  |||| ||| |||||||||  |||||
seq2  --AAGGTATTCGATCT-ATATTA-ATACAAGGT-CTTTCTGCA--TTAGA  86

seq1  CTCTTTCTAAATTCACAACACTTACTTAAGCAAAATATAAGTGTTATTAT  150
      ||| ||||||| ||||||||| ||||  ||| |||||| ||||    |||
seq2  CTC-TTCTAAA-TCACAACAC-TACT--AGC-AAATAT-AGTG----TAT  125

seq1  ATTAATTATGTCATGCACTGGTTTTTATCTTCCTGTGTTCTAAAAGGATA  200
      ||  | ||||||||||||||| ||||||||||||||| ||| ||||||||
seq2  ATATAATATGTCATGCACTGG-TTTTATCTTCCTGTG-TCT-AAAGGATA  172

seq1  CTCTTGATTTTTTTTAAATTCCTAACAACAACCCTTTGAAAATGAATTGT  250
      ||||||||||||||  || ||||||||||||||| |||||||||||||| 
seq2  CTCTTGATTTTTTT--AAATCCTAACAACAACCC-TTGAAAATGAATTG-  218

seq1  TATTCCAACTTTGAAAACCAAACCGAGCCAGGACTTTGAACAAACAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAACTTTGAAAACCAAACCGAGCCAGGACTTTGAACAAACAGAAG  268

seq1  TGTGCACATTCATATGAAGTCGACCTGGGTTTGAATACAGGGGAGTCTGA  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTGCACATTCATATGAAGTCGACCTGGGTTTGAATACAGAGGAGTCTGA  318

seq1  CATGTTTTCCCCTTCATAACTAACATTTCTTTCTATATTGCAAATCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTCCCCTTCATAACTAACATTTCTTTCTATATTGCAAATCTTTG  368

seq1  AGATTTGTAGCTTTAAAGTATGTTAAAATTAAAAAAAATAGAAAAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTAGCTTTAAAGTATGTTAAAATTAAAAAAAATAGAAAAAAAAG  418

seq1  GAAGCTAGAAGTGCCTAAGTATTTATCTATACTTCATTTGTCTTAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGAAGTGCCTAAGTATTTATCTATACTTCATTTGTCTTAAAAGT  468

seq1  AATATACCAGGACATTGAGCTAAGCCCATCTGACCAGTGCAATTTCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCAGGACATTGAGCTAAGCCCATCTGACCAGTGCAATTTCAGTT  518

seq1  TAATGACCTTTAACCTTGTTGAGGGACAAGGAAGGAAGTTAAGGAACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACCTTTAACCTTGTTGAGGGACAAGGAAGGAAGTTAAGGAACAAC  568

seq1  TATAGGAGGCACAATGGCTTGTTCCTGTTAGAAAACTATATCTCCATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGGCACAATGGCTTGTTCCTGTTAGAAAACTATATCTCCATTCA  618

seq1  ATTAGCATTAGTACAACAAATGCAACTCCTGGGTGGGGTCATGTTTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTAGTACAACAAATGCAACTCCTGGGTGGGGTCATGTTTCTTA  668

seq1  CTCCCTGAAAAGAGGAAATCTTGGAAGCCATTTTGAATGTTAAGTACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGAAAAGAGGAAATCTTGGAAGCCATTTTGAATGTTAAGTACCAT  718

seq1  ACTAATTAGCATATTATTAGCATTACTATTAAGCAGATTTCTACCTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAGCATATTATTAGCATTACTATTAAGCAGATTTCTACCTACCA  768

seq1  GTATAACAGTACTTGTTTGATCCTTATTGTTAAACTTGTAGAGGTAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACAGTACTTGTTTGATCCTTATTGTTAAACTTGTAGAGGTAATTA  818

seq1  AGGAAAGATCTAAACTCAAGTTCCAGGGAACTTCATCCCCACACCACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATCTAAACTCAAGTTCCAGGGAACTTCATCCCCACACCACAAT  868

seq1  AATGACACCAAATTCTACTGGACTTATTAAAAACCCAGGTGCCAAAGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACCAAATTCTACTGGACTTATTAAAAACCCAGGTGCCAAAGAGC  918

seq1  CTCAAGCAGCTATCCATCGTCTTGTCTGCCTATCACCATGTCAAGCAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCAGCTATCCATCGTCTTGTCTGCCTATCACCATGTCAAGCAGCT  968

seq1  ATCCATCCTCTTGTCTGCCTATCACCATGTCTTCGGACATTTTTCCTATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCTCTTGTCTGCCTATCACCATGTCTTCGGACATTTTTCCTATG  1018

seq1  CCCTAATAAATTTAAACTCTTTTCAATTAATTCCCCTTGTGACCATCTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATAAATTTAAACTCTTTTCAATTAATTCCCCTTGTGACCATCTCT  1068

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1074