BAC Information

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BAC

Clone NameB6Ng01-058M09
Chromosome3 (Build37)
Map Location 81,799,620 - 81,867,497
singlet/doubletdoublet
Overlap geneAccn5, Gucy1b3
Upstream geneEG626841, Pdgfc, LOC229443, LOC100041901, Ctso, Tdo2
Downstream geneGucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058M09.bB6Ng01-058M09.g
ACCDH880259DH880260
length1,0581,155
definitionDH880259|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M09, 5' end.DH880260|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,866,434 - 81,867,497)(81,799,620 - 81,800,797)
sequence
gaattcagcatgacatttccacaagaagatgattcctggtctgtactctg
cttactctgtttttagctcctccagggagcctgacagaggatcattttag
gaaggaatgcttaagagataaaggagcttgtttcaataaacagagaggat
gtgggtctggttggaagttagctgatctctctggaaaaggctgcttctct
gttttctacacatggagtgtggatccttctcactcatttaagggtgacta
tggattggtgggtgttttatagaaactaagcttattatgaaaaattatat
gattggatttaattcatttcgaagaacagaacatggtgactataatgaat
tagcatatattttgttgtagccttgattaacatttacatattttattagt
atattttagctcagatgtcactaaatttccatgtggacattagagttggt
tcacagtaagaagaaaattggaaaaataacaaaattgacctagtcgtggc
cttcaaaacagccaattcaattcctaggaatttattctgtttctctagaa
acatacaaatatagtccttgtaatgttaccctttatacttattgaagaaa
ataaaagcactgtacctcactaccaagacttcaatgtatttgaacaatgc
aaatttgtgcagtcgtggtatccaagagtaatttgttgaacggaaaagaa
agccatcaaagatgacattgaaactagctgccttaaaaagcattacatat
tcaagtgtgaacaacttgatatagcactgaaagtagtttttttttcacgc
taagggaagcttgttatttcatttttagttttttctttcctgtgccttat
gaattcttataataagtaataagagcacctaacttgaatcactgcattat
caaagagtatgcatctgtgcatcaactgtttagtgtttttcaaattgttc
cgatgtatgaaatagaagatataagctctttgagaaactgtgtttctttt
acttgatagttatgtatgcttgaattgtagaataaggccacctgaataca
ggtcaata
gaattctctcagttctcccgggattggctttattaggcgattctgtagct
ttctttacgtttactgggaaatggggtggggcagggaagaggggcttaca
agtctatcttctgtcacataggcttattccacatagcatcaccatcagag
aaagaaagtgtgagcatctatgtttaattttaattgagtatcttagaaag
tgaaaaggccaggtttacaaaagaacaagttatatctgtgagaagaatcc
ttggtcttgatttcaaataataaagtgaggaaaaatggagagggaattgt
aactacataaacaagttgaaattcaaatttaattcagtcactaggaggga
ggagcagaagcaagagtgacttcttgacaaaaccaaaccatgtaagccca
gcttcaagttatggtattggagtttcccaatagatgtccaatgttgaagg
gaaaaaatgcttgtgaaatattaccatgacaaaggcatcaggctctagcg
gagaaacatgtaattactgtgtgtggtcaacagatggcagcatttataca
tatggatgcatatcagggtttattaataatattaatggtaagttctcaaa
ggtgttactataaaaaaggtggcctttgtgatttggcaaatttatattat
tttattagtgcttcttttttagttagtatcttttttcttttgtaacatta
ttcttctatttccactggtcactttgttacagttgtatctcttttatgaa
agaaacttcaaaacaacgatacttcacgtccacaaacacacacacacaca
cacacacacacacacacacaaacacacacacacatacacacaatcacaat
caaatttgatttctatgaagctgaacaaacgtgaagagactgtcacctgg
gtatccactggtatgatcagaggccactgtgagtcacagctttcttcttt
ctttgttctttgtttctttcctcctttcttttcagaaagtgggtttcaat
gtgctatctggatataatccatcatgctccttgccagtctgaaatgccat
agctggtctgtccgtttttttgatacagaataaggcctcctagagcctaa
caaagcaaccaaaattaaattgcccttacagtgaacctttatggcttatt
ttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81866434_81867497
seq2: B6Ng01-058M09.b_47_1104 (reverse)

seq1  TATTGACCTGTATGTCAAGTGTGACCTTATTCTACATTTCAAGCATACAT  50
      ||||||||||||| |||   ||| |||||||||||| |||||||||||||
seq2  TATTGACCTGTAT-TCA--GGTGGCCTTATTCTACAATTCAAGCATACAT  47

seq1  AACTATCAAGTAAAAGAAACACAGTTCTCCAAAGAGCTTATATCTTCTTA  100
      ||||||||||||||||||||||||||   |||||||||||||||||||  
seq2  AACTATCAAGTAAAAGAAACACAGTTTCTCAAAGAGCTTATATCTTCT--  95

seq1  ATATCATACATCGGAACAATTTGGAAAAACACTAAACAGTTGATGCACAG  150
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTCATACATCGGAACAATTT-GAAAAACACTAAACAGTTGATGCACAG  144

seq1  ATGCATACTCTTTGATAATGCAGTGATTCAAGTTAGGTGCTCTTATTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACTCTTTGATAATGCAGTGATTCAAGTTAGGTGCTCTTATTACT  194

seq1  TATTATAAGAATTCATAAGGCACAGGAAAGAAAAAACTAAAAATGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAGAATTCATAAGGCACAGGAAAGAAAAAACTAAAAATGAAATA  244

seq1  ACAAGCTTCCCTTAGCCTGAAAAAAAAACTACTTTCAGTGCTATATCAAG  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAAGCTTCCCTTAGCGTGAAAAAAAAACTACTTTCAGTGCTATATCAAG  294

seq1  TTGTTCACACTTGAATATGTAATGCTTTTTAAGGCAGCTAGTTTCAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCACACTTGAATATGTAATGCTTTTTAAGGCAGCTAGTTTCAATGT  344

seq1  CATCTTTGATGGCTTTCTTTTCCGTTCAACAAATTACTCTTGGATACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGATGGCTTTCTTTTCCGTTCAACAAATTACTCTTGGATACCAC  394

seq1  GACTGCACAAATTTGCATTGTTCAAATACATTGAAGTCTTGGTAGTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCACAAATTTGCATTGTTCAAATACATTGAAGTCTTGGTAGTGAGG  444

seq1  TACAGTGCTTTTATTTTCTTCAATAAGTATAAAGGGTAACATTACAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCTTTTATTTTCTTCAATAAGTATAAAGGGTAACATTACAAGGA  494

seq1  CTATATTTGTATGTTTCTAGAGAAACAGAATAAATTCCTAGGAATTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTGTATGTTTCTAGAGAAACAGAATAAATTCCTAGGAATTGAAT  544

seq1  TGGCTGTTTTGAAGGCCACGACTAGGTCAATTTTGTTATTTTTCCAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTTGAAGGCCACGACTAGGTCAATTTTGTTATTTTTCCAATTT  594

seq1  TCTTCTTACTGTGAACCAACTCTAATGTCCACATGGAAATTTAGTGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTACTGTGAACCAACTCTAATGTCCACATGGAAATTTAGTGACAT  644

seq1  CTGAGCTAAAATATACTAATAAAATATGTAAATGTTAATCAAGGCTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTAAAATATACTAATAAAATATGTAAATGTTAATCAAGGCTACAA  694

seq1  CAAAATATATGCTAATTCATTATAGTCACCATGTTCTGTTCTTCGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATGCTAATTCATTATAGTCACCATGTTCTGTTCTTCGAAATG  744

seq1  AATTAAATCCAATCATATAATTTTTCATAATAAGCTTAGTTTCTATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATCCAATCATATAATTTTTCATAATAAGCTTAGTTTCTATAAAA  794

seq1  CACCCACCAATCCATAGTCACCCTTAAATGAGTGAGAAGGATCCACACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCAATCCATAGTCACCCTTAAATGAGTGAGAAGGATCCACACTC  844

seq1  CATGTGTAGAAAACAGAGAAGCAGCCTTTTCCAGAGAGATCAGCTAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTAGAAAACAGAGAAGCAGCCTTTTCCAGAGAGATCAGCTAACTT  894

seq1  CCAACCAGACCCACATCCTCTCTGTTTATTGAAACAAGCTCCTTTATCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGACCCACATCCTCTCTGTTTATTGAAACAAGCTCCTTTATCTC  944

seq1  TTAAGCATTCCTTCCTAAAATGATCCTCTGTCAGGCTCCCTGGAGGAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATTCCTTCCTAAAATGATCCTCTGTCAGGCTCCCTGGAGGAGCT  994

seq1  AAAAACAGAGTAAGCAGAGTACAGACCAGGAATCATCTTCTTGTGGAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAGTAAGCAGAGTACAGACCAGGAATCATCTTCTTGTGGAAAT  1044

seq1  GTCATGCTGAATTC  1064
      ||||||||||||||
seq2  GTCATGCTGAATTC  1058

seq1: chr3_81799620_81800797
seq2: B6Ng01-058M09.g_68_1222

seq1  GAATTCTCTCAGTTCTCCCGGGATTGGCTTTATTAGGCGATTCTGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGTTCTCCCGGGATTGGCTTTATTAGGCGATTCTGTAGCT  50

seq1  TTCTTTACGTTTACTGGGAAATGGGGTGGGGCAGGGAAGAGGGGCTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACGTTTACTGGGAAATGGGGTGGGGCAGGGAAGAGGGGCTTACA  100

seq1  AGTCTATCTTCTGTCACATAGGCTTATTCCACATAGCATCACCATCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATCTTCTGTCACATAGGCTTATTCCACATAGCATCACCATCAGAG  150

seq1  AAAGAAAGTGTGAGCATCTATGTTTAATTTTAATTGAGTATCTTAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTGTGAGCATCTATGTTTAATTTTAATTGAGTATCTTAGAAAG  200

seq1  TGAAAAGGCCAGGTTTACAAAAGAACAAGTTATATCTGTGAGAAGAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGCCAGGTTTACAAAAGAACAAGTTATATCTGTGAGAAGAATCC  250

seq1  TTGGTCTTGATTTCAAATAATAAAGTGAGGAAAAATGGAGAGGGAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTGATTTCAAATAATAAAGTGAGGAAAAATGGAGAGGGAATTGT  300

seq1  AACTACATAAACAAGTTGAAATTCAAATTTAATTCAGTCACTAGGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATAAACAAGTTGAAATTCAAATTTAATTCAGTCACTAGGAGGGA  350

seq1  GGAGCAGAAGCAAGAGTGACTTCTTGACAAAACCAAACCATGTAAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAAGCAAGAGTGACTTCTTGACAAAACCAAACCATGTAAGCCCA  400

seq1  GCTTCAAGTTATGGTATTGGAGTTTCCCAATAGATGTCCAATGTTGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAGTTATGGTATTGGAGTTTCCCAATAGATGTCCAATGTTGAAGG  450

seq1  GAAAAAATGCTTGTGAAATATTACCATGACAAAGGCATCAGGCTCTAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGCTTGTGAAATATTACCATGACAAAGGCATCAGGCTCTAGCG  500

seq1  GAGAAACATGTAATTACTGTGTGTGGTCAACAGATGGCAGCATTTATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACATGTAATTACTGTGTGTGGTCAACAGATGGCAGCATTTATACA  550

seq1  TATGGATGCATATCAGGGTTTATTAATAATATTAATGGTAAGTTCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGCATATCAGGGTTTATTAATAATATTAATGGTAAGTTCTCAAA  600

seq1  GGTGTTACTATAAAAAAGGTGGCCTTTGTGATTTGGCAAATTTATATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTACTATAAAAAAGGTGGCCTTTGTGATTTGGCAAATTTATATTAT  650

seq1  TTTATTAGTGCTTCTTTTTTAGTTAGTATCTTTTTTCTTTTGTAACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGTGCTTCTTTTTTAGTTAGTATCTTTTTTCTTTTGTAACATTA  700

seq1  TTCTTCTATTTCCACTGGTCACTTTGTTACAGTTGTATCTCTTTTATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTATTTCCACTGGTCACTTTGTTACAGTTGTATCTCTTTTATGAA  750

seq1  AGAAACTTCAAAACAACGATACTTCACGTCCACAAACACACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCAAAACAACGATACTTCACGTCCACAAACACACACACACACA  800

seq1  CACACACACACACACACACAAACACACACACACATACACACAATCACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAAACACACACACACATACACACAATCACAAT  850

seq1  CAAAATTTGATTTCTATGAAGCTGAACAAAACGTGAAGAGACTGTCACCT  900
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  C-AAATTTGATTTCTATGAAGCTGAAC-AAACGTGAAGAGACTGTCACCT  898

seq1  GGGTATCCACTGGTATGATCAGAGGCCACTGTGAGGTCACAGCTTTTCTT  950
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  GGGTATCCACTGGTATGATCAGAGGCCACTGTGA-GTCACAGC-TTTCTT  946

seq1  CTTTCTTTGTTTCTTTGTTTCTTTCCTCCTTTCTTTTTCAGAAAGTGGGT  1000
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTCTTTG-TTCTTTGTTTCTTTCCTCCTTTC-TTTTCAGAAAGTGGGT  994

seq1  TTCAATTGTGCTATCTGGGTTTTAATCTATCATGGCCTCTTGCCAGTCTG  1050
      ||||| |||||||||| || | ||||| ||||| ||  ||||||||||||
seq2  TTCAA-TGTGCTATCT-GGATATAATCCATCAT-GCTCCTTGCCAGTCTG  1041

seq1  TAAATGCCCATAGCTGGTTCTGTCCGTGTTTTTTGATTTACAGATTAAGT  1100
       ||||| |||||||||| ||||||||| ||||||||  |||||| |||| 
seq2  -AAATG-CCATAGCTGG-TCTGTCCGT-TTTTTTGA--TACAGAATAAG-  1084

seq1  GCTTCATGAGGCTTAACATAGCAACACAAATATTTAAATTGCCCCTACAG  1150
      || || |   || ||||| ||||||  |||   ||||||||||| |||||
seq2  GCCTCCTAGAGCCTAACAAAGCAACCAAAA---TTAAATTGCCCTTACAG  1131

seq1  TTTACAACCTTAAGTGCTGTATTTTATA  1178
      |    |||||| |  ||| |||||||||
seq2  T---GAACCTTTATGGCT-TATTTTATA  1155