BAC Information

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BAC

Clone NameB6Ng01-058O20
Chromosome3 (Build37)
Map Location 19,057,647 - 19,209,599
singlet/doubletdoublet
Overlap geneArmc1, Mtfr1, Pde7a
Upstream geneCyp7b1, LOC622921, LOC100040153
Downstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058O20.bB6Ng01-058O20.g
ACCDH880370DH880371
length1,164780
definitionDH880370|Mus musculus domesticus DNA, BAC clone: B6Ng01-058O20, 5' end.DH880371|Mus musculus domesticus DNA, BAC clone: B6Ng01-058O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,208,411 - 19,209,599)(19,057,647 - 19,058,425)
sequence
gaattcagtgtaaaatactaagtggaatttcaaataatacttttgttact
ttgaagtgtagtttgtgaactgtattttttattattgcttaacacgtttt
aaagttccagaataatatcaaaatatattaaagcactcaggagaaggttt
tcaataatagtaattaaaggtctttaatggaagtaactttcatttctaaa
tactgttttcttcctgagatcagcagacatgacgaacacccactttcact
tacatataaatagtaaggcacactttatctaaagttatgaaatatgtgtt
acatgtccctgcttcctgagagggaagatcaagggattgaaaacaaaact
gaccccaagagctttacctagtatcttaattaccacacaaaaaacaattt
aagcttcagttttctttgcccacccctagactaagattaaatgggtagtg
gaattttaaaactgtgactgtggcaacaaaccacaaattctatagaatta
caccgattttactagcttttaaaacttataaacaacttccagatctccaa
gagagtatgtgggaactccttaggctgagacagaacttttcttagtgaat
acatacctttttcctggtgaacataacagggtacctcactcgagctgaca
tgggttaccatcacttagtatcacttagtagtaaatcgtgtagtgaaact
gaatgctttggggatagatggcaatatgtcatgggaaaaacgaggtagat
aatcttagaatcttattcagtgctctttaaaacaagcatttggttgactc
acaagctgccatacccttgaatcgttggttcctaagctaaacgttacaga
atttggaagaagtttagatgggtttgtgattttatttaagagtctttaaa
aaaaatgtatttagttttttctttagtttctagtagaatttattacaatt
ttctatttgaaaatatattcaaaactagttatcatttcagttcattttga
cttcagtattagagtgcagttcatagtaggaattataaatattttaggat
ggatagatgagagtacctcagacttagttgagtatcattgaacatgaaac
gtggtaccaaagtacaggtatgcctatattcgaattgttcacatgtatgg
ggactaaaatgacc
gaattcatcttctatgacatgcacatgaataaaagcttcttaaattctgc
aacaaaaaaaaagagtagaagtcaggttgacaaaatcagtcctcgtctgc
caaggtagacaaggattccatttgtctgtttacttacacagtgcagactg
gcctcagactcactgcgctgctgatgctgtccgtgtattatccccctgcc
tctgattctcaaaagcttggatgacaagcaagcaccctctgtgcctagct
ctggtacctttaagtaactacattataatatctttagaaagaagcagatg
aatctaaatcacacacacaaaaataaggactggcaattctaaagcttgtg
aaaaataaaatgaacataagctgaaggaagcaatcaagttatttatatat
gcaaaagcacatatgccatcctcaatactccagtaaatcccattttagca
atacatattttaacactaaggttccaataagcacggtctttacgtacaag
cttgtaacctttgctccccttttcaaactgtaacactgccaggacttttc
cctcctaggacctttctaggcctaaaaaaaaaaaaaaaaaatgcctcaag
gcaaagtggtgagctgacagcctgggtttttcttactcctctgtggggag
ggggtgaggagagatgcacagcaaactgtgaaatctcttaaagcaaagga
gaagagcaaaggagacctccctttgccaagccctgtggcctacctgcatg
caagcttgtctcagacactgatgtaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19208411_19209599
seq2: B6Ng01-058O20.b_45_1208 (reverse)

seq1  GGTCATTTTTAGTCTACAATTACATGTTTGAAACCAAATTTTGGATAAAT  50
      ||||| ||||||||  ||  ||||||  ||||  |||  || | |||   
seq2  GGTCA-TTTTAGTCCCCA--TACATG--TGAA--CAA--TTCGAATA---  38

seq1  GAGCCATTACTGTACATATTGTACCACTGTTTCATGTTTAAAATTGATAC  100
       || |||  |||||| | | ||||||| |||||||||| ||   ||||||
seq2  TAGGCATACCTGTAC-TTTGGTACCAC-GTTTCATGTTCAA---TGATAC  83

seq1  TCAACTTAGTCTGAGGTACTCTCATCTATTCATTCCCTTAAATATTTATT  150
      |||||| |||||||||||||||||||||| |||  ||| |||||||||| 
seq2  TCAACTAAGTCTGAGGTACTCTCATCTATCCAT--CCTAAAATATTTAT-  130

seq1  AATTTCCTACTATGAACTGCACTCTAATACTGAAGTCAAAATGAACTGAA  200
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AATTCCTACTATGAACTGCACTCTAATACTGAAGTCAAAATGAACTGAA  179

seq1  ATGATAACTAGTTTTGAATATATTTTCAAATAGAAAATTTGTAAATAAAT  250
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  ATGATAACTAGTTTTGAATATATTTTCAAATAGAAAA-TTGT-AATAAAT  227

seq1  TCTACTTAGAAACTAAAGAAAAAACTTAAATACATTTTTTTTTAAGACTC  300
      ||||| ||||||||||||||||||| |||||||||||||||| |||||||
seq2  TCTAC-TAGAAACTAAAGAAAAAAC-TAAATACATTTTTTTTAAAGACTC  275

seq1  TTAAATAAAATCACAAAACCATCTAAACTTCTTCCAAATTCTGTAACGTT  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAAATAAAATCACAAACCCATCTAAACTTCTTCCAAATTCTGTAACGTT  325

seq1  TAGCTTAGGAACCAACGATTCAAGGGTATGGCAGCTTGTGAGTCAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGGAACCAACGATTCAAGGGTATGGCAGCTTGTGAGTCAACCAA  375

seq1  ATGCTTGTTTTAAAGAGCACTGAATAAGATTCTAAGATTATCTACCTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTTTTAAAGAGCACTGAATAAGATTCTAAGATTATCTACCTCGT  425

seq1  TTTTCCCATGACATATTGCCATCTATCCCCAAAGCATTCAGTTTCACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATGACATATTGCCATCTATCCCCAAAGCATTCAGTTTCACTAC  475

seq1  ACGATTTACTACTAAGTGATACTAAGTGATGGTAACCCATGTCAGCTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTACTACTAAGTGATACTAAGTGATGGTAACCCATGTCAGCTCGA  525

seq1  GTGAGGTACCCTGTTATGTTCACCAGGAAAAAGGTATGTATTCACTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTACCCTGTTATGTTCACCAGGAAAAAGGTATGTATTCACTAAGA  575

seq1  AAAGTTCTGTCTCAGCCTAAGGAGTTCCCACATACTCTCTTGGAGATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTGTCTCAGCCTAAGGAGTTCCCACATACTCTCTTGGAGATCTG  625

seq1  GAAGTTGTTTATAAGTTTTAAAAGCTAGTAAAATCGGTGTAATTCTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTTTATAAGTTTTAAAAGCTAGTAAAATCGGTGTAATTCTATAG  675

seq1  AATTTGTGGTTTGTTGCCACAGTCACAGTTTTAAAATTCCACTACCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGGTTTGTTGCCACAGTCACAGTTTTAAAATTCCACTACCCATT  725

seq1  TAATCTTAGTCTAGGGGTGGGCAAAGAAAACTGAAGCTTAAATTGTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTAGTCTAGGGGTGGGCAAAGAAAACTGAAGCTTAAATTGTTTTT  775

seq1  TGTGTGGTAATTAAGATACTAGGTAAAGCTCTTGGGGTCAGTTTTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTAATTAAGATACTAGGTAAAGCTCTTGGGGTCAGTTTTGTTTT  825

seq1  CAATCCCTTGATCTTCCCTCTCAGGAAGCAGGGACATGTAACACATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTTGATCTTCCCTCTCAGGAAGCAGGGACATGTAACACATATTT  875

seq1  CATAACTTTAGATAAAGTGTGCCTTACTATTTATATGTAAGTGAAAGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTTAGATAAAGTGTGCCTTACTATTTATATGTAAGTGAAAGTGG  925

seq1  GTGTTCGTCATGTCTGCTGATCTCAGGAAGAAAACAGTATTTAGAAATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGTCATGTCTGCTGATCTCAGGAAGAAAACAGTATTTAGAAATGA  975

seq1  AAGTTACTTCCATTAAAGACCTTTAATTACTATTATTGAAAACCTTCTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTTCCATTAAAGACCTTTAATTACTATTATTGAAAACCTTCTCC  1025

seq1  TGAGTGCTTTAATATATTTTGATATTATTCTGGAACTTTAAAACGTGTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTTTAATATATTTTGATATTATTCTGGAACTTTAAAACGTGTTA  1075

seq1  AGCAATAATAAAAAATACAGTTCACAAACTACACTTCAAAGTAACAAAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAATAAAAAATACAGTTCACAAACTACACTTCAAAGTAACAAAAG  1125

seq1  TATTATTTGAAATTCCACTTAGTATTTTACACTGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTGAAATTCCACTTAGTATTTTACACTGAATTC  1164

seq1: chr3_19057647_19058425
seq2: B6Ng01-058O20.g_68_847

seq1  GAATTCATCTTCTATGACATGCACATGAATAAAAGCTTCTTAAATTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCTATGACATGCACATGAATAAAAGCTTCTTAAATTCTGC  50

seq1  AACAAAAAAAAAGAGTAGAAGTCAGGTTGACAAAATCAGTCCTCGTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAAAAGAGTAGAAGTCAGGTTGACAAAATCAGTCCTCGTCTGC  100

seq1  CAAGGTAGACAAGGATTCCATTTGTCTGTTTACTTACACAGTGCAGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGACAAGGATTCCATTTGTCTGTTTACTTACACAGTGCAGACTG  150

seq1  GCCTCAGACTCACTGCGCTGCTGATGCTGTCCGTGTATTATCCCCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGACTCACTGCGCTGCTGATGCTGTCCGTGTATTATCCCCCTGCC  200

seq1  TCTGATTCTCAAAAGCTTGGATGACAAGCAAGCACCCTCTGTGCCTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCTCAAAAGCTTGGATGACAAGCAAGCACCCTCTGTGCCTAGCT  250

seq1  CTGGTACCTTTAAGTAACTACATTATAATATCTTTAGAAAGAAGCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACCTTTAAGTAACTACATTATAATATCTTTAGAAAGAAGCAGATG  300

seq1  AATCTAAATCACACACACAAAAATAAGGACTGGCAATTCTAAAGCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATCACACACACAAAAATAAGGACTGGCAATTCTAAAGCTTGTG  350

seq1  AAAAATAAAATGAACATAAGCTGAAGGAAGCAATCAAGTTATTTATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATGAACATAAGCTGAAGGAAGCAATCAAGTTATTTATATAT  400

seq1  GCAAAAGCACATATGCCATCCTCAATACTCCAGTAAATCCCATTTTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCACATATGCCATCCTCAATACTCCAGTAAATCCCATTTTAGCA  450

seq1  ATACATATTTTAACACTAAGGTTCCAATAAGCACGGTCTTTACGTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTTTAACACTAAGGTTCCAATAAGCACGGTCTTTACGTACAAG  500

seq1  CTTGTAACCTTTGCTCCCCTTTTCAAACTGTAACACTGCCAGGACTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAACCTTTGCTCCCCTTTTCAAACTGTAACACTGCCAGGACTTTTC  550

seq1  CCTCCTAGGACCTTTCTAGGCCTAAAAAAAAAAAAAAAAAATGCCTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGACCTTTCTAGGCCTAAAAAAAAAAAAAAAAAATGCCTCAAG  600

seq1  GCAAAGTGGTGAGCTGACAGCCTGGGTTTTTCTTACTCCTCTGTGGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGGTGAGCTGACAGCCTGGGTTTTTCTTACTCCTCTGTGGGGAG  650

seq1  GGGGTGAGGAGAGATGCACAGCAAACTGTGAAATCTCCTAAAGCAAAGGA  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGGTGAGGAGAGATGCACAGCAAACTGTGAAATCTCTTAAAGCAAAGGA  700

seq1  GAAGAGCAAAGGAGACCACCC-TTGCCAAGCCCTGTGGCCTACCTGCAAT  749
      ||||||||||||||||| ||| ||||||||||||||||||||||||| ||
seq2  GAAGAGCAAAGGAGACCTCCCTTTGCCAAGCCCTGTGGCCTACCTGC-AT  749

seq1  GCAAGC-TGCCTCAGACACTGAGGCAGGAAG  779
      |||||| || |||||||||||| | ||||||
seq2  GCAAGCTTGTCTCAGACACTGATGTAGGAAG  780