BAC Information

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BAC

Clone NameB6Ng01-058P07
Chromosome3 (Build37)
Map Location 83,378,817 - 83,524,233
singlet/doubletdoublet
Overlap geneLOC100042091
Upstream geneLOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007
Downstream geneSfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058P07.bB6Ng01-058P07.g
ACCDH880392DH880393
length1,095959
definitionDH880392|Mus musculus domesticus DNA, BAC clone: B6Ng01-058P07, 5' end.DH880393|Mus musculus domesticus DNA, BAC clone: B6Ng01-058P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,378,817 - 83,380,251)(83,523,266 - 83,524,233)
sequence
gaattcattcacatttaaattaaattacagcttaaaagattagaagcatg
aatgttttaattataattggggaaaatctacttagaagaaaattacaaat
gatgaaacctcacaaatatcatgttgaagcttccttctcaaatcagacta
catttggccctccagatctgtggtctccatatgcaaggattcaagcgacc
acaaaaaaaaaaagcatccataaatgttatgtcagtaagaagtggtggat
acacagactttgtttttcttctgctgctattctctaagcaatatggcaca
acaactattctcacggtaattagattctaccgggaattatagggactcta
taatttaaggcatcagaaagatttccgtggggtgacgtgaaaccattatg
ccatttcatacaagaaacttgaatgtccacagttggtggtaccagcaggc
agtcttggaacaatccccttggattctgagaggaggctctattcttcttt
aactgaaaccagtctgaagacctggctgaggctgagtctctgaatttcta
gtacacatctgctgcttacgcaaccaggtacagtctttccgttcactcag
aactaattataacagattctgccgctcaccacaaatgtcactgggagaca
tgtggtcaagtgcctgacttctctgaggcgccatttctttgtgaagtggg
acctcccggcctacttttataggttctccggaggaatggtgctctggaga
gcatgaataggagatgccaactttagcagaaaatttcaactgtgcgttct
acctcccacctaggtgtgttcatggtcctgtctggctgcaaatggctttg
gcagaaaaacagggacagctcctctcttccttgctgggcactgaagagac
attttaattattgtctccagctttgtgggaagtataacaggagacatttg
aggcagccctcaaagtcatatgatccttccacctctgagtagctagacca
aaggagctttccagacagaagagaacattccatctgtgaatcaagagccg
tgggatcatcagaagaacatgtgagatgaagactgaagccttctg
gaattcttcatccgccttctgagccctgtttctgttgatagtgttgagag
agggtgagccatcctggagcctttcttcttctcgtctcctaccatccacc
tagggccaatcatttcctccatcactgtgtggctgagatctagcctccat
cttctgcctttgtcccagtgcggtgtgtgctattgacttctgcttcctca
gccccatcccactgcttcactgagtgctctggccctttctccaggccctt
ctttgttctaccagttcttttttctggtggaattttcctcatttccaaat
gcagagatgacagttatttggattctatccattccaggctcagatatagt
ctttttttttttagaaaattgcttctggaatcctctccaaattttatagc
ctcagatcctctgccgctggatccctcttggctagttcacggtcctccct
tacctgcacaagtcagtgctccattcgaatgttgaatgagaagtcccgtg
ggagctccctattgttccccacaccctttcctttctgcttggctttttct
tcatggacacttttctctgttctccatccccagtattcagccgtttccct
tcgtggttctgtctgtatgctacccagtgcatgatgatagcaagggatgg
agtgctctcgctggtgtcccagcagccattgccttcacaccagtcagctg
attctctgctgtgttcccaggcagggctgttcaccctcagctgcacaata
cagccaacctggagctcctaaaaacgtaagtacacaggcttcatcccaca
ccaattaagtcaaactcttgggggcttggaatcagttattagtattttta
aagctagagaagttcctctgtgaaactaaaacttgtgttacaatactggg
catttttgaagctttcttcctccttttcctttctttttccttcctccttc
cttccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83378817_83380251
seq2: B6Ng01-058P07.b_48_1142

seq1  GAATTCATTCACATTTAAATTAAATTACAGCTTAAAAGATTAGAAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACATTTAAATTAAATTACAGCTTAAAAGATTAGAAGCATG  50

seq1  AATGTTTTAATTATAATTGGGGAAAATCTACTTAGAAGAAAATTACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTAATTATAATTGGGGAAAATCTACTTAGAAGAAAATTACAAAT  100

seq1  GATGAAACCTCACAAATATCATGTTGAAGCTTCCTTCTCAAATCAGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACCTCACAAATATCATGTTGAAGCTTCCTTCTCAAATCAGACTA  150

seq1  CATTTGGCCCTCCAGATCTGTGGTCTCCATATGCAAGGATTCAAGCGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCCCTCCAGATCTGTGGTCTCCATATGCAAGGATTCAAGCGACC  200

seq1  ACAAAAAAAAAAAGCATCCATAAATGTTATGTCAGTAAGAAGTGGTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAAAAGCATCCATAAATGTTATGTCAGTAAGAAGTGGTGGAT  250

seq1  ACACAGACTTTGTTTTTCTTCTGCTGCTATTCTCTAAGCAATATGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACTTTGTTTTTCTTCTGCTGCTATTCTCTAAGCAATATGGCACA  300

seq1  ACAACTATTCTCACGGTAATTAGATTCTACCGGGAATTATAGGGACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTATTCTCACGGTAATTAGATTCTACCGGGAATTATAGGGACTCTA  350

seq1  TAATTTAAGGCATCAGAAAGATTTCCGTGGGGTGACGTGAAACCATTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAGGCATCAGAAAGATTTCCGTGGGGTGACGTGAAACCATTATG  400

seq1  CCATTTCATACAAGAAACTTGAATGTCCACAGTTGGTGGTACCAGCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCATACAAGAAACTTGAATGTCCACAGTTGGTGGTACCAGCAGGC  450

seq1  AGTCTTGGAACAATCCCCTTGGATTCTGAGAGGAGGCTCTATTCTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGAACAATCCCCTTGGATTCTGAGAGGAGGCTCTATTCTTCTTT  500

seq1  AACTGAAACCAGTCTGAAGACCTGGCTGAGGCTGAGTCTCTGAATTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAACCAGTCTGAAGACCTGGCTGAGGCTGAGTCTCTGAATTTCTA  550

seq1  GTACACATCTGCTGCTTACGCAACCAGGTACAGTCTTTCCGTTCACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATCTGCTGCTTACGCAACCAGGTACAGTCTTTCCGTTCACTCAG  600

seq1  AACTAATTATAACAGATTCTGCCGCTCACCACAAATGTCACTGGGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTATAACAGATTCTGCCGCTCACCACAAATGTCACTGGGAGACA  650

seq1  TGTGGTCAAGTGCCTGACTTCTCTGAGGCGCCATTTCTTTGTGAAGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCAAGTGCCTGACTTCTCTGAGGCGCCATTTCTTTGTGAAGTGGG  700

seq1  ACCTCCCGGCCTACTTTTATAGGTTCTCCGGAGGAATGGTGCTCTGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCGGCCTACTTTTATAGGTTCTCCGGAGGAATGGTGCTCTGGAGA  750

seq1  GCATGAATAGGAGATGCCAACTTTAGCAGGAAAATTTCAACTGTGCGTTC  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCATGAATAGGAGATGCCAACTTTAGCA-GAAAATTTCAACTGTGCGTTC  799

seq1  TACCTCCCACCTAGGTGTGTTCATGGTCCTGTCTGGCTGCAAATGGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCACCTAGGTGTGTTCATGGTCCTGTCTGGCTGCAAATGGCTTT  849

seq1  GGCAGAAAAACAGGGACAGCTCCTCTCTTCCTTGCTGGGCACTGAAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAAACAGGGACAGCTCCTCTCTTCCTTGCTGGGCACTGAAGAGA  899

seq1  CATTTTAATTATTGTCTCCAGCTTTGTGGGAAGTTATAACAGGAGACAAT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  CATTTTAATTATTGTCTCCAGCTTTGTGGGAAG-TATAACAGGAGAC-AT  947

seq1  TTGAGGCAGGCCCTCAAAGTCATATGAATTCCTTCCACCTCTGAGTTAGC  1000
      |||||||| ||||||||||||||||||  |||||||||||||||| ||||
seq2  TTGAGGCA-GCCCTCAAAGTCATATGA--TCCTTCCACCTCTGAG-TAGC  993

seq1  TAAGACCAAAGGAGCTTTTCCCAGACAGGAGAGAAACATTCCAATCTGTT  1050
      | ||||||||||||||||  |||||||| |||| |||||||| ||||| |
seq2  T-AGACCAAAGGAGCTTT--CCAGACAGAAGAG-AACATTCC-ATCTG-T  1037

seq1  GACATCAAGAGGCCCGTGGGATCATCCAGGGAAGATCATGGTAGAGGATG  1100
      || ||||||||  |||||||||||||    ||||| ||||  |   ||||
seq2  GA-ATCAAGAG--CCGTGGGATCATC---AGAAGAACATGTGA---GATG  1078

seq1  AAGACTGAGGCCTTCCTGGTAAAGGCTTTGGAAGAACATGAGGTCATGGG  1150
      |||||||| ||||||                                   
seq2  AAGACTGAAGCCTTCTG---------------------------------  1095

seq1  GTCGGTCAAGGATGTAAATTGAGAAAAGCAACAAGTACTCCTGCTGGCTC  1200
                                                        
seq2  --------------------------------------------------  1095

seq1  CTTTTGATGAAGACATGCCTTGGTCACCAAAAAGCAAACACACATGCATG  1250
                                                        
seq2  --------------------------------------------------  1095

seq1  CTCTTTTAAAATGCCAAAACAAATGCAAGATTTTCCCTTGGAAAACAGTA  1300
                                                        
seq2  --------------------------------------------------  1095

seq1  TCAACACTGGCAGACAATTTTGAAGGAAGATGTGGAGGACTGGGCCCGCC  1350
                                                        
seq2  --------------------------------------------------  1095

seq1  TGGTCCATTTATGCTCAGACACTGCCTCTTCACACACTAAAGCTACTGTT  1400
                                                        
seq2  --------------------------------------------------  1095

seq1  CATTGTTGGGCCAGAACTACAGGCCAAGCCTTCTG  1435
                                         
seq2  -----------------------------------  1095

seq1: chr3_83523266_83524233
seq2: B6Ng01-058P07.g_69_1027 (reverse)

seq1  GGAAGGAAGGAAGGAAGGAAGGAAAAAAGAAAGGAAAAAGGAAGGAAAGA  50
      |||||||||||||| ||||||| ||||||||||| |||||||  | ||||
seq2  GGAAGGAAGGAAGG-AGGAAGG-AAAAAGAAAGG-AAAAGGA--GGAAGA  45

seq1  AAGCTTCAAAAATGCCCAGTATTGGTAAACACAAGTTTTTAGTTTCACAG  100
      ||||||||||||||||||||||||   |||||||| ||||||||||||||
seq2  AAGCTTCAAAAATGCCCAGTATTG--TAACACAAG-TTTTAGTTTCACAG  92

seq1  AGGAACTTCTCTAGCTTTTAAAAATACTAATAACTGATTCCAAGCCCCCA  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGAACTTCTCTAGC-TTTAAAAATACTAATAACTGATTCCAAGCCCCCA  141

seq1  AGAGTTTGACTTAATTGGTGTGGGATGAAGCCTGTGTACTTACGTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGACTTAATTGGTGTGGGATGAAGCCTGTGTACTTACGTTTTTA  191

seq1  GGAGCTCCAGGTTGGCTGTATTGTGCAGCTGAGGGTGAACAGCCCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCCAGGTTGGCTGTATTGTGCAGCTGAGGGTGAACAGCCCTGCCT  241

seq1  GGGAACACAGCAGAGAATCAGCTGACTGGTGTGAAGGCAATGGCTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACAGCAGAGAATCAGCTGACTGGTGTGAAGGCAATGGCTGCTGG  291

seq1  GACACCAGCGAGAGCACTCCATCCCTTGCTATCATCATGCACTGGGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGCGAGAGCACTCCATCCCTTGCTATCATCATGCACTGGGTAGC  341

seq1  ATACAGACAGAACCACGAAGGGAAACGGCTGAATACTGGGGATGGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACAGAACCACGAAGGGAAACGGCTGAATACTGGGGATGGAGAAC  391

seq1  AGAGAAAAGTGTCCATGAAGAAAAAGCCAAGCAGAAAGGAAAGGGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGTGTCCATGAAGAAAAAGCCAAGCAGAAAGGAAAGGGTGTGG  441

seq1  GGAACAATAGGGAGCTCCCACGGGACTTCTCATTCAACATTCGAATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATAGGGAGCTCCCACGGGACTTCTCATTCAACATTCGAATGGAG  491

seq1  CACTGACTTGTGCAGGTAAGGGAGGACCGTGAACTAGCCAAGAGGGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTTGTGCAGGTAAGGGAGGACCGTGAACTAGCCAAGAGGGATCC  541

seq1  AGCGGCAGAGGATCTGAGGCTATAAAATTTGGAGAGGATTCCAGAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCAGAGGATCTGAGGCTATAAAATTTGGAGAGGATTCCAGAAGCAA  591

seq1  TTTTCTAAAAAAAAAAAGACTATATCTGAGCCTGGAATGGATAGAATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAAAAAAAAAAGACTATATCTGAGCCTGGAATGGATAGAATCCA  641

seq1  AATAACTGTCATCTCTGCATTTGGAAATGAGGAAAATTCCACCAGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGTCATCTCTGCATTTGGAAATGAGGAAAATTCCACCAGAAAAA  691

seq1  AGAACTGGTAGAACAAAGAAGGGCCTGGAGAAAGGGCCAGAGCACTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGTAGAACAAAGAAGGGCCTGGAGAAAGGGCCAGAGCACTCAGT  741

seq1  GAAGCAGTGGGATGGGGCTGAGGAAGCAGAAGTCAATAGCACACACCGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTGGGATGGGGCTGAGGAAGCAGAAGTCAATAGCACACACCGCA  791

seq1  CTGGGACAAAGGCAGAAGATGGAGGCTAGATCTCAGCCACACAGTGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAAAGGCAGAAGATGGAGGCTAGATCTCAGCCACACAGTGATGG  841

seq1  AGGAAATGATTGGCCCTAGGTGGATGGTAGGAGACGAGAAGAAGAAAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGATTGGCCCTAGGTGGATGGTAGGAGACGAGAAGAAGAAAGGC  891

seq1  TCCAGGATGGCTCACCCTCTCTCAACACTATCAACAGAAACAGGGCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATGGCTCACCCTCTCTCAACACTATCAACAGAAACAGGGCTCAG  941

seq1  AAGGCGGATGAAGAATTC  968
      ||||||||||||||||||
seq2  AAGGCGGATGAAGAATTC  959